Barley photosystem I-LHCI-Lhca6 supercomplex
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7ewk
Q-score: 0.396
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ DOI: doi:10.1038/s41586-021-04277-6 Pubmed: 34879391 ]
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psi-lhci-lhca6 supercomplex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca3 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i iron-sulfur center (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit d (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit h (6 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (21 kDa, Protein from Hordeum vulgare)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit k (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit f (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit e (7 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit l (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca1 (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca6 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
RNA Polymerase II dimer (Class 3)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7ozp
Q-score: 0.328
Aibara S, Dienemann C, Cramer P
Nucleic Acids Res (2021) 49 pp. 10747-10755 [ Pubmed: 34530439 DOI: doi:10.1093/nar/gkab783 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa domesticus)
- Rna polymerase ii subunit d (16 kDa, Protein from Sus scrofa domesticus)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa domesticus)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa domesticus)
- Dna-directed rna polymerase subunit (217 kDa, Protein from Sus scrofa domesticus)
- Rna polymerase ii subunit k (7 kDa, Protein from Sus scrofa domesticus)
- Rna polymerase ii dimer (1 MDa, Complex from Sus scrofa domesticus)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa domesticus)
- Dna-directed rna polymerase ii subunit f (14 kDa, Protein from Sus scrofa domesticus)
- Rna_pol_l_2 domain-containing protein (13 kDa, Protein from Sus scrofa domesticus)
- Dna-directed rna polymerase subunit beta (134 kDa, Protein from Sus scrofa domesticus)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa domesticus)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa domesticus)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7bke
Q-score: 0.618
Watanabe T, Pfeil-Gardiner O, Kahnt J, Koch J, Shima S, Murphy BJ
Science (2021) 373 pp. 1151-1156 [ Pubmed: 34516836 DOI: doi:10.1126/science.abg5550 ]
- Non-cubane [4fe-4s]-cluster (351 Da, Ligand)
- Formate dehydrogenase (75 kDa, Protein from Methanospirillum hungatei JF-1)
- Dimeric formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex (948 kDa, Complex from Methanospirillum hungatei JF-1)
- Cob--com heterodisulfide reductase subunit b (32 kDa, Protein from Methanospirillum hungatei JF-1)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cob--com heterodisulfide reductase iron-sulfur subunit a (72 kDa, Protein from Methanospirillum hungatei JF-1)
- F420-non-reducing hydrogenase subunit d (15 kDa, Protein from Methanospirillum hungatei JF-1)
- Cob--com heterodisulfide reductase subunit c (21 kDa, Protein from Methanospirillum hungatei JF-1)
- Formate dehydrogenase, beta subunit (f420) (45 kDa, Protein from Methanospirillum hungatei JF-1)
- Iron/sulfur cluster (351 Da, Ligand)
- Flavin-adenine dinucleotide (785 Da, Ligand)
Cryo-EM structure of the Sulfolobus acidocaldarius RNA polymerase at 2.88 A
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7ok0
Q-score: 0.558
Pilotto S, Fouqueau T, Lukoyanova N, Sheppard C, Lucas-Staat S, Diaz-Santin LM, Matelska D, Prangishvili D, Cheung ACM, Werner F
Nat Commun (2021) 12 pp. 5523-5523 [ DOI: doi:10.1038/s41467-021-25666-5 Pubmed: 34535646 ]
- Fe3-s4 cluster (295 Da, Ligand)
- Dna-directed rna polymerase subunit e (20 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit d (29 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit h (9 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit n (7 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit b (126 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit k (10 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Apo-rna polymerase (404 kDa, Complex)
- Dna-directed rna polymerase subunit a' (99 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit l (10 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit p (5 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase, subunit g (15 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase, subunit f (13 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit a'' (44 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Conserved protein (12 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
Cryo-EM structure of the cellular negative regulator TFS4 bound to the archaeal RNA polymerase
Resolution: 2.61 Å
EM Method: Single-particle
Fitted PDBs: 7oqy
Q-score: 0.586
Pilotto S, Fouqueau T, Lukoyanova N, Sheppard C, Lucas-Staat S, Diaz-Santin LM, Matelska D, Prangishvili D, Cheung ACM, Werner F
Nat Commun (2021) 12 pp. 5523-5523 [ DOI: doi:10.1038/s41467-021-25666-5 Pubmed: 34535646 ]
- Fe3-s4 cluster (295 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit a'' (44 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit p (5 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase, subunit m (rpom-2) (10 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- Conserved protein (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit d (29 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit h (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit l (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit k (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit n (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit a' (99 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Magnesium ion (24 Da, Ligand)
- Tfs4 bound to the rna polymerase (414 kDa, Complex from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit b (126 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit e (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase, subunit f (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase, subunit g (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
Overall map of a transcribing RNA polymerase II-U1 snRNP complex with 145-nt RNA
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7b0y
Q-score: 0.344
Zhang S, Aibara S, Vos SM, Agafonov DE, Luhrmann R, Cramer P
Science (2021) 371 pp. 305-309 [ DOI: doi:10.1126/science.abf1870 Pubmed: 33446560 ]
- U1 snrnp (Complex from Homo sapiens)
- Small nuclear ribonucleoprotein e (10 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa domesticus)
- 145-nt rna (46 kDa, RNA from synthetic construct)
- Rna polymerase ii (Complex from Sus scrofa domesticus)
- Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein g (8 kDa, Protein from Homo sapiens)
- Rpb12 (7 kDa, Protein from Sus scrofa domesticus)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa domesticus)
- Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Homo sapiens)
- Nucleic acids (Complex from synthetic construct)
- Template dna (14 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa domesticus)
- U1 small nuclear ribonucleoprotein a (31 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit d (16 kDa, Protein from Sus scrofa domesticus)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa domesticus)
- Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit f (14 kDa, Protein from Sus scrofa domesticus)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (134 kDa, Protein from Sus scrofa domesticus)
- U1 small nuclear ribonucleoprotein 70 kda (51 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein f (9 kDa, Protein from Homo sapiens)
- The transcribing rna polymerase ii-u1 snrnp complex with 145-nt rna (Complex)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa domesticus)
- Dna-directed rna polymerase ii subunit rpb1 (217 kDa, Protein from Sus scrofa domesticus)
- U1 snrna (52 kDa, RNA from Homo sapiens)
- Small nuclear ribonucleoprotein-associated protein (23 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa domesticus)
- Non-template dna (14 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase ii subunit rpb11-a (13 kDa, Protein from Sus scrofa domesticus)
Cryo-EM structure of Toxoplasma gondii mitochondrial ATP synthase dimer, consensus map
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6tmk
Q-score: 0.428
Muhleip A, Kock Flygaard R, Ovciarikova J, Lacombe A, Fernandes P, Sheiner L, Amunts A
Nat Commun (2021) 12 pp. 120-120 [ Pubmed: 33402698 DOI: doi:10.1038/s41467-020-20381-z ]
- Subunit i/j (26 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Subunit f (13 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Subunit c (17 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg6 (27 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Inhibitor of f1 (16 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atp synthase subunit delta (19 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg4 (28 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (749 Da, Ligand)
- Atptg2 (35 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Subunit k (17 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg9 (18 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atp synthase subunit epsilon (8 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Oligomycin sensitivity conferring protein (oscp) (27 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg1 (46 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit gamma (34 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atp synthase subunit alpha,subunit alpha (61 kDa, Protein from Toxoplasma gondii GT1)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptg8 (23 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg3 (35 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Atptg13 (14 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Cardiolipin (1 kDa, Ligand)
- Atptg12 (15 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg17 (9 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Subunit d (61 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Subunit 8 (22 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atp synthase subunit beta (59 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg10 (15 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg16 (11 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg11 (15 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg5 (28 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg15 (13 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Subunit b (64 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Atptg7 (26 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Subunit a (24 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
- Mitochondrial atp synthase dimer, composite model (1 MDa, Complex from Toxoplasma gondii GT1)
- Atptg14 (14 kDa, Protein from Toxoplasma gondii (strain ATCC 50853 / GT1))
Human V-ATPase in state 3 with SidK and ADP
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6wm4
Q-score: 0.442
Wang L, Wu D, Robinson CV, Wu H, Fu TM
Mol Cell (2020) 80 pp. 501- [ DOI: doi:10.1016/j.molcel.2020.09.029 Pubmed: 33065002 ]
- Renin receptor (39 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit d (28 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit g 1 (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- V-type proton atpase subunit e 1 (9 kDa, Protein from Homo sapiens)
- Human v-atpase with sidk and adp (Complex from Homo sapiens)
- Sidk (65 kDa, Protein from Legionella pneumophila)
- V-type proton atpase subunit s1 (52 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Ribonuclease kappa (15 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit h (55 kDa, Protein from Homo sapiens)
- V-type proton atpase 21 kda proteolipid subunit (21 kDa, Protein from Homo sapiens)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Homo sapiens)
- V-type proton atpase catalytic subunit a (68 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Homo sapiens)
- V-type proton atpase 116 kda subunit a isoform 1 (96 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit d 1 (40 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit c 1 (43 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit f (13 kDa, Protein from Homo sapiens)
Structure of a human ABCE1-bound 43S pre-initiation complex - State II
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6zvj
Q-score: 0.365
Kratzat H, Mackens-Kiani T, Ameismeier M, Potocnjak M, Cheng J, Dacheux E, Namane A, Berninghausen O, Herzog F, Fromont-Racine M, Becker T, Beckmann R
EMBO J (2021) 40 pp. e105179-e105179 [ DOI: doi:10.15252/embj.2020105179 Pubmed: 33289941 ]
- Eukaryotic translation initiation factor 3 subunit f (29 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit b (65 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (23 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (36 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (14 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit i (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 1 (10 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (28 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (24 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (555 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s5 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (14 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (34 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (24 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 40s ribosomal protein s19 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (7 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (7 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (24 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (61 kDa, Protein from Homo sapiens)
- Abce1-bound 43s initiation complex (Complex from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit e (50 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 40s ribosomal protein s11 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (5 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (20 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Atp-binding cassette sub-family e member 1 (66 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (25 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (85 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit l (44 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (12 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Rna recognition motif (unknown) (5 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (86 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (6 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (41 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s3a (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (23 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit j (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (13 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- 40s ribosomal protein s21 (8 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (21 kDa, Protein from Homo sapiens)
Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - F1Fo tetramer
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ynz
Q-score: 0.317
Flygaard RK, Muhleip A, Tobiasson V, Amunts A
Nat Commun (2020) 11 pp. 5342-5342 [ Pubmed: 33093501 DOI: doi:10.1038/s41467-020-18993-6 ]
- Atptt11 (17 kDa, Protein from Tetrahymena thermophila)
- Atptt7 (26 kDa, Protein from Tetrahymena thermophila)
- Subunit i/j (24 kDa, Protein from Tetrahymena thermophila)
- Atp synthase subunit beta (53 kDa, Protein from Tetrahymena thermophila)
- Subunit d (26 kDa, Protein from Tetrahymena thermophila)
- Atptt10 (17 kDa, Protein from Tetrahymena thermophila)
- Inhibitor of f1 (if1) (12 kDa, Protein from Tetrahymena thermophila)
- Subunit delta (17 kDa, Protein from Tetrahymena thermophila)
- Atptt2 (54 kDa, Protein from Tetrahymena thermophila)
- Oligomycin sensitivity-conferring protein (oscp) (24 kDa, Protein from Tetrahymena thermophila)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (749 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase f0 subunit 9 (8 kDa, Protein from Tetrahymena thermophila)
- Atptt4 (32 kDa, Protein from Tetrahymena thermophila)
- Atptt6 (29 kDa, Protein from Tetrahymena thermophila)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptt1 (54 kDa, Protein from Tetrahymena thermophila)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptt8 (21 kDa, Protein from Tetrahymena thermophila)
- Ymf66 (52 kDa, Protein from Tetrahymena thermophila)
- Atptt9 (18 kDa, Protein from Tetrahymena thermophila)
- Cardiolipin (1 kDa, Ligand)
- Atptt3 (34 kDa, Protein from Tetrahymena thermophila)
- Subunit k (20 kDa, Protein from Tetrahymena thermophila)
- Atp synthase subunit gamma (32 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Subunit b (43 kDa, Protein from Tetrahymena thermophila)
- Mitochondrial atp synthase, f1fo tetramer (Complex from Tetrahymena thermophila)
- Atp synthase subunit alpha (59 kDa, Protein from Tetrahymena thermophila)
- Ubiquinone-8 (727 Da, Ligand)
- Atptt13 (16 kDa, Protein from Tetrahymena thermophila)
- Subunit f (24 kDa, Protein from Tetrahymena thermophila)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Atptt5 (31 kDa, Protein from Tetrahymena thermophila)
- Subunit epsilon (7 kDa, Protein from Tetrahymena thermophila)
- Ymf56 (12 kDa, Protein from Tetrahymena thermophila)
- Atptt12 (17 kDa, Protein from Tetrahymena thermophila)