Human V-ATPase in state 2 with SidK and mEAK-7
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7u4t
Q-score: 0.331
Wang L, Wu D, Robinson CV, Fu TM
PNAS (2022) 119 pp. e2203742119-e2203742119 [ DOI: doi:10.1073/pnas.2203742119 Pubmed: 35994636 ]
- Renin receptor (39 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit d (28 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit g 1 (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- V-type proton atpase subunit e 1 (9 kDa, Protein from Homo sapiens)
- Sidk (65 kDa, Protein from Legionella pneumophila)
- Mtor-associated protein meak7 (51 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit s1 (52 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Ribonuclease kappa (15 kDa, Protein from Homo sapiens)
- V-atpase with sidk and meak-7 (Complex from Homo sapiens)
- V-type proton atpase subunit h (55 kDa, Protein from Homo sapiens)
- V-type proton atpase 21 kda proteolipid subunit (21 kDa, Protein from Homo sapiens)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Homo sapiens)
- V-type proton atpase catalytic subunit a (68 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Homo sapiens)
- V-type proton atpase 116 kda subunit a isoform 1 (96 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit d 1 (40 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit c 1 (43 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit f (13 kDa, Protein from Homo sapiens)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6vq9
Q-score: 0.434
Abbas YM, Wu D, Bueler SA, Robinson CV, Rubinstein JL
Science (2020) 367 pp. 1240-1246 [ Pubmed: 32165585 DOI: doi:10.1126/science.aaz2924 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type proton atpase subunit g (13 kDa, Protein from Rattus norvegicus)
- Atpase h+-transporting v1 subunit d (28 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Rattus norvegicus)
- Atpase h+-transporting v1 subunit a (68 kDa, Protein from Rattus norvegicus)
- Effector protein sidk (34 kDa, Protein from Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
- Magnesium ion (24 Da, Ligand)
- Soluble region of rat brain v-atpase composed of subunits a, b2, d, e1, g2, and the legionella pneumophila effector protein sidk (Complex from Rattus norvegicus)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Rattus norvegicus)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6vqa
Q-score: 0.407
Abbas YM, Wu D, Bueler SA, Robinson CV, Rubinstein JL
Science (2020) 367 pp. 1240-1246 [ Pubmed: 32165585 DOI: doi:10.1126/science.aaz2924 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type proton atpase subunit g (13 kDa, Protein from Rattus norvegicus)
- Atpase h+-transporting v1 subunit d (28 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Rattus norvegicus)
- Atpase h+-transporting v1 subunit a (68 kDa, Protein from Rattus norvegicus)
- Effector protein sidk (34 kDa, Protein from Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
- Magnesium ion (24 Da, Ligand)
- Soluble region of rat brain v-atpase composed of subunits a, b2, d, e1, g2, and the legionella pneumophila effector protein sidk (Complex from Rattus norvegicus)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Rattus norvegicus)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6vqb
Q-score: 0.418
Abbas YM, Wu D, Bueler SA, Robinson CV, Rubinstein JL
Science (2020) 367 pp. 1240-1246 [ Pubmed: 32165585 DOI: doi:10.1126/science.aaz2924 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type proton atpase subunit g (13 kDa, Protein from Rattus norvegicus)
- Atpase h+-transporting v1 subunit d (28 kDa, Protein from Rattus norvegicus)
- Uncharacterized protein (34 kDa, Protein from Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
- Soluble region of rat brain v-atpase composed of subunits a, b2, d, e1, g2, and the legionella pneumophila effector protein sidk. (Complex from Rattus norvegicus)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Rattus norvegicus)
- Atpase h+-transporting v1 subunit a (68 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Rattus norvegicus)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6vqc
Q-score: 0.369
Abbas YM, Wu D, Bueler SA, Robinson CV, Rubinstein JL
Science (2020) 367 pp. 1240-1246 [ Pubmed: 32165585 DOI: doi:10.1126/science.aaz2924 ]
- V-type proton atpase 116 kda subunit a isoform 1 (96 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit s1 (51 kDa, Protein from Rattus norvegicus)
- Atpase h+-transporting v1 subunit d (28 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit e 2 (9 kDa, Protein from Rattus norvegicus)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Rattus norvegicus)
- Renin receptor (39 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit (40 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit f (13 kDa, Protein from Rattus norvegicus)
- Ribonuclease k (11 kDa, Protein from Rattus norvegicus)
- Membrane embedded region of rat brain v-atpase composed of subunits a, c", c1-9, d, e, f, atp6ap1, atp6ap2, as well as subunits f and part of subunit d from the v1 region. (Complex from Rattus norvegicus)
- Atpase, h+ transporting, v0 subunit b (predicted), isoform cra_a (21 kDa, Protein from Rattus norvegicus)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6vqg
Q-score: 0.287
Abbas YM, Wu D, Bueler SA, Robinson CV, Rubinstein JL
Science (2020) 367 pp. 1240-1246 [ Pubmed: 32165585 DOI: doi:10.1126/science.aaz2924 ]
- V-type proton atpase 116 kda subunit a isoform 1 (96 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit s1 (51 kDa, Protein from Rattus norvegicus)
- Atpase h+-transporting v1 subunit d (28 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit e 2 (9 kDa, Protein from Rattus norvegicus)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Rattus norvegicus)
- Renin receptor (39 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit (40 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit f (13 kDa, Protein from Rattus norvegicus)
- Ribonuclease k (11 kDa, Protein from Rattus norvegicus)
- Membrane embedded region of rat brain v-atpase composed of subunits a, c", c1-9, d, e, f, atp6ap1, atp6ap2, as well as subunits f and part of subunit d from the v1 region. (Complex from Rattus norvegicus)
- Atpase, h+ transporting, v0 subunit b (predicted), isoform cra_a (21 kDa, Protein from Rattus norvegicus)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6vqh
Q-score: 0.242
Abbas YM, Wu D, Bueler SA, Robinson CV, Rubinstein JL
Science (2020) 367 pp. 1240-1246 [ Pubmed: 32165585 DOI: doi:10.1126/science.aaz2924 ]
- V-type proton atpase 116 kda subunit a isoform 1 (96 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit s1 (51 kDa, Protein from Rattus norvegicus)
- Atpase h+-transporting v1 subunit d (28 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit e 2 (9 kDa, Protein from Rattus norvegicus)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Rattus norvegicus)
- Renin receptor (39 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit (40 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit f (13 kDa, Protein from Rattus norvegicus)
- Ribonuclease k (11 kDa, Protein from Rattus norvegicus)
- Membrane embedded region of rat brain v-atpase composed of subunits a, c", c1-9, d, e, f, atp6ap1, atp6ap2, as well as subunits f and part of subunit d from the v1 region. (Complex from Rattus norvegicus)
- Atpase, h+ transporting, v0 subunit b (predicted), isoform cra_a (21 kDa, Protein from Rattus norvegicus)
Saccharomyces cerevisiae V-ATPase Vph1-VO
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6o7t
Q-score: 0.508
Vasanthakumar T, Bueler SA, Wu D, Beilsten-Edmands V, Robinson CV, Rubinstein JL
PNAS (2019) 116 pp. 7272-7277 [ Pubmed: 30910982 DOI: doi:10.1073/pnas.1814818116 ]
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit a, vacuolar isoform (98 kDa, Protein from Saccharomyces cerevisiae)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae)
- Saccharomyces cerevisiae v-atpase vph1-vo (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae)
- Putative protein ypr170w-b (9 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae)
Saccharomyces cerevisiae V-ATPase Stv1-VO
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6o7u
Q-score: 0.564
Vasanthakumar T, Bueler SA, Wu D, Beilsten-Edmands V, Robinson CV, Rubinstein JL
PNAS (2019) 116 pp. 7272-7277 [ Pubmed: 30910982 DOI: doi:10.1073/pnas.1814818116 ]
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae)
- Saccharomyces cerevisiae v-atpase stv1-vo (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit a, golgi isoform (104 kDa, Protein from Saccharomyces cerevisiae)
- Putative protein ypr170w-b (9 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae)
Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 1
Resolution: 6.6 Å
EM Method: Single-particle
Fitted PDBs: 6o7v
Q-score: 0.175
Vasanthakumar T, Bueler SA, Wu D, Beilsten-Edmands V, Robinson CV, Rubinstein JL
PNAS (2019) 116 pp. 7272-7277 [ Pubmed: 30910982 DOI: doi:10.1073/pnas.1814818116 ]
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- Vacuolar atp synthase catalytic subunit a (70 kDa, Protein from Saccharomyces cerevisiae (strain RM11-1a))
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit g (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit h (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Putative protein ypr170w-b (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit a, golgi isoform (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Saccharomyces cerevisiae v-atpase stv1-v1vo state 1 (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae)