Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8rb8
Q-score: 0.455
Nat Chem Biol (2024) 20 pp. 1078-1085 [ Pubmed: 38890433 DOI: doi:10.1038/s41589-024-01641-1 ]
- Ion-translocating oxidoreductase complex subunit c (52 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit g (25 kDa, Protein from Azotobacter vinelandii DJ)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Riboflavin (376 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit a (19 kDa, Protein from Azotobacter vinelandii DJ)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit b (17 kDa, Protein from Azotobacter vinelandii DJ)
- Flavin mononucleotide (456 Da, Ligand from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit d (39 kDa, Protein from Azotobacter vinelandii DJ)
- Iron/sulfur cluster (351 Da, Ligand)
- Protein rnfh (9 kDa, Protein from Azotobacter vinelandii DJ)
- Heptameric complex nadh:ferredoxin oxidoreductase rnf1 (188 kDa, Complex from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit e (25 kDa, Protein from Azotobacter vinelandii DJ)
Cryo-EM structure of the NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii, NADH added
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8rb9
Q-score: 0.491
Nat Chem Biol (2024) 20 pp. 1078-1085 [ Pubmed: 38890433 DOI: doi:10.1038/s41589-024-01641-1 ]
- Ion-translocating oxidoreductase complex subunit c (52 kDa, Protein from Azotobacter vinelandii DJ)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Riboflavin (376 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit a (19 kDa, Protein from Azotobacter vinelandii DJ)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit b (17 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit g (24 kDa, Protein from Azotobacter vinelandii DJ)
- Flavin mononucleotide (456 Da, Ligand from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit d (39 kDa, Protein from Azotobacter vinelandii DJ)
- Iron/sulfur cluster (351 Da, Ligand)
- Protein rnfh (9 kDa, Protein from Azotobacter vinelandii DJ)
- Heptameric complex nadh:ferredoxin oxidoreductase rnf1 (188 kDa, Complex from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit e (25 kDa, Protein from Azotobacter vinelandii DJ)
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 8rbm
Q-score: 0.473
Nat Chem Biol (2024) 20 pp. 1078-1085 [ Pubmed: 38890433 DOI: doi:10.1038/s41589-024-01641-1 ]
- Ion-translocating oxidoreductase complex subunit c (52 kDa, Protein from Azotobacter vinelandii DJ)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Riboflavin (376 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit a (19 kDa, Protein from Azotobacter vinelandii DJ)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit b (17 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit g (24 kDa, Protein from Azotobacter vinelandii DJ)
- Flavin mononucleotide (456 Da, Ligand from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit d (39 kDa, Protein from Azotobacter vinelandii DJ)
- Iron/sulfur cluster (351 Da, Ligand)
- Heptameric complex nadh:ferredoxin oxidoreductase rnf1 (188 kDa, Complex from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit e (25 kDa, Protein from Azotobacter vinelandii DJ)
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8rbq
Q-score: 0.444
Nat Chem Biol (2024) 20 pp. 1078-1085 [ Pubmed: 38890433 DOI: doi:10.1038/s41589-024-01641-1 ]
- Ion-translocating oxidoreductase complex subunit c (52 kDa, Protein from Azotobacter vinelandii DJ)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Riboflavin (376 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit a (19 kDa, Protein from Azotobacter vinelandii DJ)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit b (17 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit g (24 kDa, Protein from Azotobacter vinelandii DJ)
- Flavin mononucleotide (456 Da, Ligand from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit d (39 kDa, Protein from Azotobacter vinelandii DJ)
- Iron/sulfur cluster (351 Da, Ligand)
- Protein rnfh (9 kDa, Protein from Azotobacter vinelandii DJ)
- Heptameric complex nadh:ferredoxin oxidoreductase rnf1 (188 kDa, Complex from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit e (25 kDa, Protein from Azotobacter vinelandii DJ)
Cryo-EM structure of the I-II-III2-IV2 respiratory supercomplex from Tetrahymena thermophila
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8bqs
Q-score: 0.356
Muhleip A, Flygaard RK, Baradaran R, Haapanen O, Gruhl T, Tobiasson V, Marechal A, Sharma V, Amunts A
Nature (2023) 615 pp. 934-938 [ DOI: doi:10.1038/s41586-023-05817-y Pubmed: 36949187 ]
- Cx9c domain-containing protein (28 kDa, Protein from Tetrahymena thermophila SB210)
- Uqcrtt2 (4 kDa, Protein from Tetrahymena thermophila SB210)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh-ubiquinone oxidoreductase chain 1 (32 kDa, Protein from Tetrahymena thermophila SB210)
- Yflt domain-containing protein (19 kDa, Protein from Tetrahymena thermophila SB210)
- Lysozyme (12 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (23 kDa, Protein from Tetrahymena thermophila SB210)
- Chch domain-containing protein (13 kDa, Protein from Tetrahymena thermophila SB210)
- Apocytochrome b (50 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh-ubiquinone oxidoreductase 75 kda subunit (80 kDa, Protein from Tetrahymena thermophila SB210)
- Potassium ion (39 Da, Ligand)
- Transmembrane protein, putative (18 kDa, Protein from Tetrahymena thermophila SB210)
- Ndub4 (14 kDa, Protein from Tetrahymena thermophila SB210)
- Carrier protein (37 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein (20 kDa, Protein from Tetrahymena thermophila SB210)
- Diphthamide synthesis protein (22 kDa, Protein from Tetrahymena thermophila SB210)
- Chromosome condensation regulator rcc1 repeat protein,chromosome condensation regulator rcc1 repeat protein,chromosome condensation regulator rcc1 repeat protein,chromosome condensation regulator rcc1 repeat protein,chain 150 (50 kDa, Protein from Tetrahymena thermophila SB210)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Acyl-coa synthetase (amp-forming)/amp-acid ligase ii (36 kDa, Protein from Tetrahymena thermophila SB210)
- Thioredoxin (19 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (24 kDa, Protein from Tetrahymena thermophila SB210)
- Rnase iii domain-containing protein (35 kDa, Protein from Tetrahymena thermophila SB210)
- Dnaj domain protein (36 kDa, Protein from Tetrahymena thermophila SB210)
- Coxtt22 (17 kDa, Protein from Tetrahymena thermophila SB210)
- Surf1-like protein (47 kDa, Protein from Tetrahymena thermophila SB210)
- Coxtt10 (28 kDa, Protein from Tetrahymena thermophila SB210)
- Zinc-finger protein (15 kDa, Protein from Tetrahymena thermophila SB210)
- Ribosomal protein l51/s25/ci-b8 domain protein (12 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (7 kDa, Protein from Tetrahymena thermophila SB210)
- Transcription factor apfi protein, putative (39 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (57 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh-ubiquinone oxidoreductase chain 3 (14 kDa, Protein from Tetrahymena thermophila SB210)
- 2 iron, 2 sulfur cluster-binding protein (19 kDa, Protein from Tetrahymena thermophila SB210)
- Tim10/ddp family zinc finger protein (8 kDa, Protein from Tetrahymena thermophila SB210)
- Cytochrome c oxidase subunit 1 (80 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (18 kDa, Protein from Tetrahymena thermophila SB210)
- Zf-tim10_ddp domain-containing protein (8 kDa, Protein from Tetrahymena thermophila SB210)
- Fe3-s4 cluster (295 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Nadh-ubiquinone oxidoreductase 1, chain, putative (28 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (15 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (8 kDa, Protein from Tetrahymena thermophila SB210)
- Ndub8 (24 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase subunit 1 (7 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8, mitochondrial (37 kDa, Protein from Tetrahymena thermophila SB210)
- Peptidase m16 inactive domain protein (58 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (52 kDa, Protein from Tetrahymena thermophila SB210)
- Coxtt9 (29 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (20 kDa, Protein from Tetrahymena thermophila SB210)
- Ctf/nf-i domain-containing protein (116 kDa, Protein from Tetrahymena thermophila SB210)
- Coxtt27 (23 kDa, Protein from Tetrahymena thermophila SB210)
- Iron-binding zinc finger cdgsh type protein (21 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf75 (23 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase subunit 9 (23 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (7 kDa, Protein from Tetrahymena thermophila SB210)
- 39s ribosomal protein l9, mitochondrial (27 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (35 kDa, Protein from Tetrahymena thermophila SB210)
- Ubiquinol-cytochrome c reductase hinge protein (9 kDa, Protein from Tetrahymena thermophila SB210)
- Heme c (618 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transmembrane protein, putative (41 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (28 kDa, Protein from Tetrahymena thermophila SB210)
- Dinuclear copper ion (127 Da, Ligand)
- Transmembrane protein, putative (14 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (29 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein (7 kDa, Protein from Tetrahymena thermophila SB210)
- 37s ribosomal protein s25, mitochondrial (33 kDa, Protein from Tetrahymena thermophila SB210)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Transmembrane protein, putative (15 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf68 (72 kDa, Protein from Tetrahymena thermophila SB210)
- Phage protein (14 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase subunit 7 (51 kDa, Protein from Tetrahymena thermophila SB210)
- M16 family peptidase, putative (53 kDa, Protein from Tetrahymena thermophila SB210)
- Ph domain-containing protein (15 kDa, Protein from Tetrahymena thermophila SB210)
- Annexin (8 kDa, Protein from Tetrahymena thermophila SB210)
- Protein phosphatase 2c, putative (53 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (24 kDa, Protein from Tetrahymena thermophila SB210)
- Etc complex i subunit motif protein (24 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf67 (54 kDa, Protein from Tetrahymena thermophila SB210)
- Surf1-like protein (35 kDa, Protein from Tetrahymena thermophila SB210)
- Nad-dependent epimerase/dehydratase family protein (41 kDa, Protein from Tetrahymena thermophila SB210)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Trab family protein (45 kDa, Protein from Tetrahymena thermophila SB210)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Ndutt10 (14 kDa, Protein from Tetrahymena thermophila SB210)
- Ndub6 (15 kDa, Protein from Tetrahymena thermophila SB210)
- Uqcrtt3 (5 kDa, Protein from Tetrahymena thermophila SB210)
- Ndutt11 (15 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (14 kDa, Protein from Tetrahymena thermophila SB210)
- 2-oxoglutarate/malate carrier protein (36 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (15 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (11 kDa, Protein from Tetrahymena thermophila SB210)
- Mobilization protein (23 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh-ubiquinone oxidoreductase chain 4 (58 kDa, Protein from Tetrahymena thermophila SB210)
- Gamma-carbonic anhydrase (25 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (12 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (26 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf58 (13 kDa, Protein from Tetrahymena thermophila SB210)
- Cytochrome c oxidase subunit vb protein (75 kDa, Protein from Tetrahymena thermophila SB210)
- Acyl carrier protein (15 kDa, Protein from Tetrahymena thermophila SB210)
- Copper (ii) ion (63 Da, Ligand)
- Cullin domain-containing protein (8 kDa, Protein from Tetrahymena thermophila SB210)
- Uridine-5'-diphosphate (404 Da, Ligand)
- Structural protein (27 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (9 kDa, Protein from Tetrahymena thermophila SB210)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Cytochrome c oxidase subunit 2 (72 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf65 (43 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase, putative (20 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (8 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein (24 kDa, Protein from Tetrahymena thermophila SB210)
- Rieske iron-sulfur protein, ubiquinol-cytochrome c reductase iron-sulfur subunit (30 kDa, Protein from Tetrahymena thermophila SB210)
- Heme-a (852 Da, Ligand)
- Complex i-mnll (12 kDa, Protein from Tetrahymena thermophila SB210)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit e, mitochondrial (11 kDa, Protein from Tetrahymena thermophila SB210)
- Abc transporter (10 kDa, Protein from Tetrahymena thermophila SB210)
- Uqcrtt1 (39 kDa, Protein from Tetrahymena thermophila SB210)
- Ubiquinone-8 (727 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Transposase (8 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (16 kDa, Protein from Tetrahymena thermophila SB210)
- Cox assembly mitochondrial protein (17 kDa, Protein from Tetrahymena thermophila SB210)
- Gram domain protein (10 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (16 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase subunit 10 (18 kDa, Protein from Tetrahymena thermophila SB210)
- Decapping nuclease (10 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (9 kDa, Protein from Tetrahymena thermophila SB210)
- Transposase (11 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase subunit 5 (88 kDa, Protein from Tetrahymena thermophila SB210)
- Sdhtt11 (5 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (15 kDa, Protein from Tetrahymena thermophila SB210)
- Oxoglutarate/malate translocator protein, putative (40 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase subunit 2 (20 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh-ubiquinone oxidoreductase 24 kda subunit (31 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (22 kDa, Protein from Tetrahymena thermophila SB210)
- Succinate dehydrogenase (36 kDa, Protein from Tetrahymena thermophila SB210)
- Zf-tim10_ddp domain-containing protein (10 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (22 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh-ubiquinone oxidoreductase complex i, 21 kda subunit (17 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 (15 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (13 kDa, Protein from Tetrahymena thermophila SB210)
- Duf4885 domain-containing protein (12 kDa, Protein from Tetrahymena thermophila SB210)
- Acyl carrier protein (16 kDa, Protein from Tetrahymena thermophila SB210)
- Lipid-a-disaccharide synthase (59 kDa, Protein from Tetrahymena thermophila SB210)
- 2-(hexadecanoyloxy)-1-[(phosphonooxy)methyl]ethyl hexadecanoate (648 Da, Ligand)
- Ndub10 (22 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf70 (10 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (15 kDa, Protein from Tetrahymena thermophila SB210)
- Gamma-carbonic anhydrase (28 kDa, Protein from Tetrahymena thermophila SB210)
- Ndutt12 (13 kDa, Protein from Tetrahymena thermophila SB210)
- Complex iii subunit vii (19 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (26 kDa, Protein from Tetrahymena thermophila SB210)
- Nduph2 (22 kDa, Protein from Tetrahymena thermophila SB210)
- Nmra domain-containing protein (36 kDa, Protein from Tetrahymena thermophila SB210)
- Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (70 kDa, Protein from Tetrahymena thermophila SB210)
- Nd5a (25 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (11 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf62 (30 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (21 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (11 kDa, Protein from Tetrahymena thermophila SB210)
- Succinate dehydrogenase complex iron-sulfur subunit d (5 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf57 (12 kDa, Protein from Tetrahymena thermophila SB210)
- Respiratory chain supercomplex from the ciliate tetrahymena thermophila (Complex from Tetrahymena thermophila SB210)
- Ndua13 (21 kDa, Protein from Tetrahymena thermophila SB210)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chain 77 (23 kDa, Protein from Tetrahymena thermophila SB210)
- Coxtt12,transmembrane protein,transmembrane protein,transmembrane protein (25 kDa, Protein from Tetrahymena thermophila SB210)
- Iron/sulfur cluster (351 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Coxtt28 (11 kDa, Protein from Tetrahymena thermophila SB210)
- Cytochrome protein c1 (37 kDa, Protein from Tetrahymena thermophila SB210)
Trypanosoma brucei mitochondrial F1Fo ATP synthase dimer
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8ap6
Q-score: 0.306
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Oligomycin sensitiviy conferring protein (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Cellular component from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
membrane region of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ap7
Q-score: 0.613
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Peripheral stalk of Trypanosoma brucei mitochondrial ATP synthase
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8ap8
Q-score: 0.475
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Cellular component from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
rotational state 1a of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8apa
Q-score: 0.436
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Cellular component from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 1b of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8apb
Q-score: 0.415
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Atptb14 (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit delta (20 kDa, Protein from Trypanosoma brucei brucei)
- Oligomycin-sensivity-conferring protein (28 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)