The Cryo-EM structure of DSR2-Tail tube-NAD+ complex
Wang R, Xu Q, Wu Z, Li J, Guo H, Liao T, Shi Y, Yuan L, Gao H, Yang R, Shi Z, Li F
Nat Commun (2024) 15 pp. 6185-6185 [ DOI: doi:10.1038/s41467-024-50410-0 Pubmed: 39039073 ]
- Tail tube protein (29 kDa, Protein from Bacillus subtilis)
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Dsr2-tail tube protein-nad+ complex (Complex from Bacillus subtilis)
The tetramer complex of DSR2 and tube-forming domain of phage tail tube protein
Int J Biol Macromol (2024) 277 pp. 134145-134145 [ Pubmed: 39059542 DOI: doi:10.1016/j.ijbiomac.2024.134145 ]
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis subsp. natto (strain BEST195))
- Bacillus phage spr tube protein (29 kDa, Protein from Bacillus phage SPR)
- The tetramer complex of dsr2 and tube-forming domain of phage tail tube protein (Complex from Bacillus subtilis subsp. natto (strain BEST195))
The dimer complex of DSR2 and tube-forming domain of phage tail tube protein
Int J Biol Macromol (2024) 277 pp. 134145-134145 [ Pubmed: 39059542 DOI: doi:10.1016/j.ijbiomac.2024.134145 ]
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis subsp. natto BEST195)
- The dimer complex of dsr2 and tube-forming domain of phage tail tube protein (Complex from Bacillus subtilis subsp. natto (strain BEST195))
- Bacillus phage spr tube protein (29 kDa, Protein from Bacillus phage SPR)
Cryo-EM structure of the monocin tail-tube, MttP.
Resolution: 2.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 8qhs
Q-score: 0.711
Sigal N, Lichtenstein-Wolfheim R, Schlussel S, Azulay G, Borovok I, Holdengraber V, Elad N, Wolf SG, Zalk R, Zarivach R, Frank GA, Herskovits AA
Nat Microbiol (2024) 9 pp. 2727-2737 [ Pubmed: 39300324 DOI: doi:10.1038/s41564-024-01793-9 ]
- Antigen a (18 kDa, Protein from Listeria monocytogenes 10403S)
- Water (18 Da, Ligand)
- Listeria monocytogenes 10403s monocin tail tube comprised of lmrg_02367 tail tube protein (mttp) (1 MDa, Complex from Listera)
Resolution: 4.48 Å
EM Method: Single-particle
Fitted PDBs: 8wfn
Q-score: 0.233
To Be Published
- A protein (Complex from Bacillus subtilis)
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis)
- Tail tube protein(ttp) (29 kDa, Protein from Bacillus subtilis)
Resolution: 10.47 Å
EM Method: Single-particle
Fitted PDBs: 6tui
Q-score: 0.08
Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P
Nat Commun (2020) 11 pp. 3034- [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Adaptor protein rcc01688 (20 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Capsid (5 MDa, Complex from Rhodobacter capsulatus SB 1003)
- Portal protein rcc01684 (42 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Tail terminator protein rcc01690 (13 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Stopper protein rcc01689 (12 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Rhodobacter capsulatus de442 (8 MDa, Virus)
- Tail tube protein rcc01691 (14 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Connector (760 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Head spike (80 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Tail (730 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Phage major capsid protein, hk97 family (40 kDa, Protein from Rhodobacter capsulatus SB 1003)
Tail-baseplate interface of native GTA particle computed with C6 symmetry
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 6teb
Q-score: 0.352
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
Neck of empty GTA particle computed with C6 symmetry
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 6toa
Q-score: 0.513
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Tail tube protein rcc01691 (14 kDa, Protein from Rhodobacter capsulatus DE442)
- Tail terminator protein rcc01690 (13 kDa, Protein from Rhodobacter capsulatus DE442)
- Connector (Complex from Rhodobacter capsulatus DE442)
- Stopper protein rcc01689 (12 kDa, Protein from Rhodobacter capsulatus DE442)
- Tail (Complex from Rhodobacter capsulatus DE442)
- Portal protein rcc01684 (42 kDa, Protein from Rhodobacter capsulatus DE442)
- Adaptor protein rcc01688 (20 kDa, Protein from Rhodobacter capsulatus DE442)
- Rhodobacter capsulatus de442 gene transfer agent neck (240 kDa, Complex from Rhodobacter capsulatus DE442)
Tail of empty GTA particle computed with helical refinement, C6 symmetry
Resolution: 3.78 Å
EM Method: Helical reconstruction
Fitted PDBs: 6tsv
Q-score: 0.468
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]