Cryo-EM structure of Cas8-HNH system at full R-loop state
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8z0k
Q-score: 0.551
Li X, Liu Y, Han J, Zhang L, Liu Z, Wang L, Zhang S, Zhang Q, Fu P, Yin H, Zhu H, Zhang H
EMBO J (2024) 43 pp. 4656-4667 [ DOI: doi:10.1038/s44318-024-00229-8 Pubmed: 39251884 ]
- Cryo-em structure of cas8-hnh system at full r-loop state (Complex from Selenomonas sp.)
- Type i-f crispr-associated protein csy3 (37 kDa, Protein from Selenomonas sp.)
- Rna (69-mer) (22 kDa, RNA from Selenomonas sp.)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (20 kDa, Protein from Selenomonas sp.)
- Hnh endonuclease (39 kDa, Protein from Selenomonas sp.)
- Dna (5'-d(p*gp*tp*gp*cp*gp*gp*a)-3') (2 kDa, DNA from Selenomonas sp.)
- Hypothetical protein j6n51_11000 (28 kDa, Protein from Selenomonas sp.)
- Dna (37-mer) (11 kDa, DNA from Selenomonas sp.)
Cryo-EM structure of Cas8-HNH system at partial R-loop state
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 8z0l
Q-score: 0.549
Li X, Liu Y, Han J, Zhang L, Liu Z, Wang L, Zhang S, Zhang Q, Fu P, Yin H, Zhu H, Zhang H
EMBO J (2024) 43 pp. 4656-4667 [ DOI: doi:10.1038/s44318-024-00229-8 Pubmed: 39251884 ]
- Type i-f crispr-associated protein csy3 (37 kDa, Protein from Selenomonas sp.)
- Rna (69-mer) (22 kDa, RNA from Selenomonas sp.)
- Dna (32-mer) (9 kDa, DNA from Selenomonas sp.)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (20 kDa, Protein from Selenomonas sp.)
- Hnh endonuclease (39 kDa, Protein from Selenomonas sp.)
- Cryo-em structure of cas8-hnh system at partial r-loop state (Complex from Selenomonas sp.)
- Hypothetical protein j6n51_11000 (28 kDa, Protein from Selenomonas sp.)
- Dna (5'-d(p*gp*tp*gp*cp*gp*gp*a)-3') (2 kDa, DNA from Selenomonas sp.)
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 7elm
Q-score: 0.472
Yang L, Zhang L, Yin P, Ding H, Xiao Y, Zeng J, Wang W, Zhou H, Wang Q, Zhang Y, Chen Z, Yang M, Feng Y
Nat Commun (2022) 13 pp. 1931-1931 [ DOI: doi:10.1038/s41467-022-29581-1 Pubmed: 35411005 ]
- Rna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
- Csy-acrif24 (Complex from Pseudomonas aeruginosa)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
- Acrif24 (24 kDa, Protein from Pseudomonas aeruginosa)
Structure of Csy-AcrIF24-dsDNA
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7eln
Q-score: 0.46
Yang L, Zhang L, Yin P, Ding H, Xiao Y, Zeng J, Wang W, Zhou H, Wang Q, Zhang Y, Chen Z, Yang M, Feng Y
Nat Commun (2022) 13 pp. 1931-1931 [ DOI: doi:10.1038/s41467-022-29581-1 Pubmed: 35411005 ]
- Csy-acrif24-dsdna (Complex from Pseudomonas aeruginosa)
- 54-mer dna (16 kDa, DNA from Pseudomonas aeruginosa)
- Acrif24 (24 kDa, Protein from Pseudomonas aeruginosa)
- Csy-acrif24 (Complex)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
- 54-mer dna (16 kDa, DNA from Pseudomonas aeruginosa)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa)
- Dsdna (Complex)
- Rna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
Structure of Csy-AcrIF24-dsDNA
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7we6
Q-score: 0.436
Yang L, Zhang L, Yin P, Ding H, Xiao Y, Zeng J, Wang W, Zhou H, Wang Q, Zhang Y, Chen Z, Yang M, Feng Y
Nat Commun (2022) 13 pp. 1931-1931 [ DOI: doi:10.1038/s41467-022-29581-1 Pubmed: 35411005 ]
- Dna (5'-d(p*gp*gp*ap*tp*gp*gp*cp*tp*tp*cp*c)-3') (16 kDa, DNA from Pseudomonas aeruginosa)
- Acrif24 (24 kDa, Protein from Pseudomonas aeruginosa)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
- Dna-r (16 kDa, DNA from Pseudomonas aeruginosa)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
- Rna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
- Type i-f crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa)
- Csy-acrif24 (Complex from Pseudomonas aeruginosa)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7eqg
Q-score: 0.532
Xie Y, Zhang L, Gao Z, Yin P, Wang H, Li H, Chen Z, Zhang Y, Yang M, Feng Y
Nat Chem Biol (2022) 18 pp. 670-677 [ Pubmed: 35301482 DOI: doi:10.1038/s41589-022-00995-8 ]
- Csy-acrif5 (Complex)
- Csy-acrif5 (Complex from Pseudomonas aeruginosa)
- Dna (Complex)
- Dna (54-mer) (16 kDa, DNA from Pseudomonas aeruginosa)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
- Dna (54-mer) (16 kDa, DNA from Pseudomonas aeruginosa)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa)
- Acrif5 (8 kDa, Protein from Pseudomonas aeruginosa)
- Rna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 7ecv
Q-score: 0.471
Liu X, Zhang L, Xiu Y, Gao T, Huang L, Xie Y, Yang L, Wang W, Wang P, Zhang Y, Yang M, Feng Y
Nucleic Acids Res (2021) 49 pp. 10178-10191 [ DOI: doi:10.1093/nar/gkab738 Pubmed: 34432044 ]
- Acrif14 (Complex from Moraxella phage Mcat5)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
- Acrif14 (14 kDa, Protein from Moraxella phage Mcat5)
- The csy-acrif14 complex (Complex)
- Rna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
- Csy (Complex from Pseudomonas aeruginosa)
- Type i-f crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa)
CryoEM structure of a CRISPR-Cas complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7jzy
Q-score: 0.469
To Be Published
- Acrf9 (7 kDa, Protein from Pseudomonas aeruginosa)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
- Crispr-cas complex (Complex from Pseudomonas aeruginosa)
- Crispr type i-f/ypest-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
Cryo-EM structure of CRISPR-Cas surveillance complex with AcrIF14
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7jzz
Q-score: 0.513
Gabel C, Li Z, Zhang H, Chang L
Nucleic Acids Res (2021) 49 pp. 584-594 [ DOI: doi:10.1093/nar/gkaa1199 Pubmed: 33332569 ]
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
- Crispr-cas complex (Complex from Pseudomonas aeruginosa)
- Acrf14 (14 kDa, Protein from unidentified)
- Crispr type i-f/ypest-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
Cryo-EM structure of Cascade-TniQ binary complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6v9q
Q-score: 0.515
Jia N, Xie W, de la Cruz MJ, Eng ET, Patel DJ
Cell Res (2020) 30 pp. 182-184 [ Pubmed: 31925391 DOI: doi:10.1038/s41422-019-0272-2 ]
- Cascade-tniq binary complex (400 kDa, Complex from Vibrio cholerae)
- Type i-f crispr-associated protein csy3 (39 kDa, Protein from Vibrio cholerae)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (23 kDa, Protein from Vibrio cholerae)
- Cas8 (72 kDa, Protein from Vibrio cholerae)
- Zinc ion (65 Da, Ligand)
- Tniq family protein (45 kDa, Protein from Vibrio cholerae)
- Rna (61-mer) (19 kDa, RNA from Vibrio cholerae)