Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8xt0
Q-score: 0.434
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms34 (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms38 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10m (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms40 (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms39 (78 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5m (48 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms22 (41 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14m (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs16m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms31 (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms33 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9m (45 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs21m (10 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15m (29 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us11m (20 kDa, Protein from Homo sapiens)
- 55s ribosome with tigecycline (Complex from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs6m (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17m (14 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Small ribosomal subunit protein ms25 (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms27 (47 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs18m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us7m (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms29 (45 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein ms26 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs1m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms23 (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms35 (36 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms37 (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3m (19 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8xt1
Q-score: 0.472
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- 55s ribosome with tigecycline (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8xt2
Q-score: 0.415
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms34 (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms38 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10m (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms40 (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms39 (78 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5m (48 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms22 (41 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14m (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs16m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms31 (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms33 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9m (45 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs21m (10 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15m (29 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us11m (20 kDa, Protein from Homo sapiens)
- 55s ribosome with tigecycline (Complex from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs6m (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17m (14 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Small ribosomal subunit protein ms25 (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms27 (47 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs18m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us7m (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms29 (45 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein ms26 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs1m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms23 (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms35 (36 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms37 (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3m (19 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8xt3
Q-score: 0.467
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- 55s ribosome with tigecycline (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8apo
Q-score: 0.231
Tobiasson V, Berzina I, Amunts A
Nat Commun (2022) 13 pp. 6132-6132 [ Pubmed: 36253367 DOI: doi:10.1038/s41467-022-33582-5 ]
- Ml64 (14 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Ul18m (12 kDa, Protein from Polytomella magna)
- Bs1m (27 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Ul14m (13 kDa, Protein from Polytomella magna)
- Ul5m (21 kDa, Protein from Polytomella magna)
- Ms106 (18 kDa, Protein from Polytomella magna)
- Us15m (18 kDa, Protein from Polytomella magna)
- Potassium ion (39 Da, Ligand)
- Us14m (13 kDa, Protein from Polytomella magna)
- Mtssu-2 (67 kDa, RNA from Polytomella magna)
- Ul30m (20 kDa, Protein from Polytomella magna)
- Ms109 (18 kDa, Protein from Polytomella magna)
- Ms37 (9 kDa, Protein from Polytomella magna)
- Mtssu-1 (32 kDa, RNA from Polytomella magna)
- Us4m-2 (20 kDa, Protein from Polytomella magna)
- Us12m (13 kDa, Protein from Polytomella magna)
- P-site trna anticodon loop (7 kDa, RNA from Polytomella magna)
- Water (18 Da, Ligand)
- Ml122 (7 kDa, Protein from Polytomella magna)
- Ms113 (7 kDa, Protein from Polytomella magna)
- Mtlsu-6 (35 kDa, RNA from Polytomella magna)
- Mtlsu-7 (171 kDa, RNA from Polytomella magna)
- Ul15m (22 kDa, Protein from Polytomella magna)
- Us3m (31 kDa, Protein from Polytomella magna)
- Zinc ion (65 Da, Ligand)
- Ul23m (18 kDa, Protein from Polytomella magna)
- Bs16m (14 kDa, Protein from Polytomella magna)
- Mtlsu-4 (23 kDa, RNA from Polytomella magna)
- Us5m (25 kDa, Protein from Polytomella magna)
- Ms29 (39 kDa, Protein from Polytomella magna)
- Ul16m (19 kDa, Protein from Polytomella magna)
- Bl31m (8 kDa, Protein from Polytomella magna)
- Mtlsu-3 (66 kDa, RNA from Polytomella magna)
- Bs18m (10 kDa, Protein from Polytomella magna)
- Bl19m (19 kDa, Protein from Polytomella magna)
- Us13m (12 kDa, Protein from Polytomella magna)
- Ml41 (10 kDa, Protein from Polytomella magna)
- Ml118 (40 kDa, Protein from Polytomella magna)
- Ml126 (44 kDa, Protein from Polytomella magna)
- Us17m (15 kDa, Protein from Polytomella magna)
- Ul13m (21 kDa, Protein from Polytomella magna)
- Ml120 (22 kDa, Protein from Polytomella magna)
- Ms111 (17 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Ms116 (10 kDa, Protein from Polytomella magna)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ml124 (52 kDa, Protein from Polytomella magna)
- Mtssu-3 (122 kDa, RNA from Polytomella magna)
- Us10m (45 kDa, Protein from Polytomella magna)
- Ms26 (19 kDa, Protein from Polytomella magna)
- Mtlsu-8 (112 kDa, RNA from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Bl20m (13 kDa, Protein from Polytomella magna)
- Bl25m (28 kDa, Protein from Polytomella magna)
- Ml125 (22 kDa, Protein from Polytomella magna)
- Ms35 (19 kDa, Protein from Polytomella magna)
- Ml128 (2 kDa, Protein from Polytomella magna)
- Ms108 (5 kDa, Protein from Polytomella magna)
- Ml105 (15 kDa, Protein from Polytomella magna)
- Ms23 (19 kDa, Protein from Polytomella magna)
- Ms110 (11 kDa, Protein from Polytomella magna)
- Us8m (43 kDa, Protein from Polytomella magna)
- Ul4m (33 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Ul3m (34 kDa, Protein from Polytomella magna)
- Ml129 (8 kDa, Protein from Polytomella magna)
- Bl27m (16 kDa, Protein from Polytomella magna)
- Us6m (13 kDa, Protein from Polytomella magna)
- Us11m (12 kDa, Protein from Polytomella magna)
- Mrna (2 kDa, RNA from Polytomella magna)
- Unknown (5 kDa, Protein from Polytomella magna)
- Ml40 (10 kDa, Protein from Polytomella magna)
- Bl32m (6 kDa, Protein from Polytomella magna)
- Magnesium ion (24 Da, Ligand)
- Ul29m (14 kDa, Protein from Polytomella magna)
- Bl24m (13 kDa, Protein from Polytomella magna)
- Ms114 (15 kDa, Protein from Polytomella magna)
- Ml123 (45 kDa, Protein from Polytomella magna)
- Ml46 (20 kDa, Protein from Polytomella magna)
- Us4m (25 kDa, Protein from Polytomella magna)
- Bl36m (5 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Us2m (26 kDa, Protein from Polytomella magna)
- Bl17m (20 kDa, Protein from Polytomella magna)
- Mtlsu-1 (35 kDa, RNA from Polytomella magna)
- Ul9m (6 kDa, Protein from Polytomella magna)
- Ms38 (4 kDa, Protein from Polytomella magna)
- Ms34 (14 kDa, Protein from Polytomella magna)
- Ul6m (27 kDa, Protein from Polytomella magna)
- Mtssu-4 (108 kDa, RNA from Polytomella magna)
- Ms45 (30 kDa, Protein from Polytomella magna)
- Unknown (954 Da, Protein from Polytomella magna)
- Ms31 (66 kDa, Protein from Polytomella magna)
- Ml127 (16 kDa, Protein from Polytomella magna)
- Ms107 (42 kDa, Protein from Polytomella magna)
- Bl33m (5 kDa, Protein from Polytomella magna)
- Mtlsu-2 (26 kDa, RNA from Polytomella magna)
- Mtlsu-5 (43 kDa, RNA from Polytomella magna)
- Us7m (12 kDa, Protein from Polytomella magna)
- Ul22m (21 kDa, Protein from Polytomella magna)
- Ml87 (16 kDa, Protein from Polytomella magna)
- Unknown (783 Da, Protein from Polytomella magna)
- A-site trna anticodon loop (6 kDa, RNA from Polytomella magna)
- Mitochondrial ribosome from polytomella magna in complex with a and p site trna as well as mrna (Complex from Polytomella magna)
- Ms115 (40 kDa, Protein from Polytomella magna)
- Bs19m (10 kDa, Protein from Polytomella magna)
- Us7m-2 (9 kDa, Protein from Polytomella magna)
- Mt-5s (22 kDa, RNA from Polytomella magna)
- Bl21m (22 kDa, Protein from Polytomella magna)
- Bl28m (15 kDa, Protein from Polytomella magna)
- Ml121 (27 kDa, Protein from Polytomella magna)
- Us3m-2 (12 kDa, Protein from Polytomella magna)
- Ml63 (7 kDa, Protein from Polytomella magna)
- Ml43 (14 kDa, Protein from Polytomella magna)
- Ul2m (33 kDa, Protein from Polytomella magna)
- Ms112 (7 kDa, Protein from Polytomella magna)
- Ms33 (9 kDa, Protein from Polytomella magna)
- Bl34m (6 kDa, Protein from Polytomella magna)
- Bl35m (16 kDa, Protein from Polytomella magna)
- Us9m (32 kDa, Protein from Polytomella magna)
- Bs21m (8 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Unknown (3 kDa, Protein from Polytomella magna)
Structure of the mitochondrial ribosome from Polytomella magna
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8a22
Q-score: 0.438
Tobiasson V, Berzina I, Amunts A
Nat Commun (2022) 13 pp. 6132-6132 [ Pubmed: 36253367 DOI: doi:10.1038/s41467-022-33582-5 ]
- Ml64 (14 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Ul18m (12 kDa, Protein from Polytomella magna)
- Bs1m (27 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Bl31m (6 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Ul14m (13 kDa, Protein from Polytomella magna)
- Ul5m (21 kDa, Protein from Polytomella magna)
- Ms106 (18 kDa, Protein from Polytomella magna)
- Us15m (18 kDa, Protein from Polytomella magna)
- Potassium ion (39 Da, Ligand)
- Us14m (13 kDa, Protein from Polytomella magna)
- Ul30m (20 kDa, Protein from Polytomella magna)
- Ms109 (18 kDa, Protein from Polytomella magna)
- Ms37 (9 kDa, Protein from Polytomella magna)
- Mtssu-1 (32 kDa, RNA from Polytomella magna)
- Us12m (13 kDa, Protein from Polytomella magna)
- Water (18 Da, Ligand)
- Ml122 (7 kDa, Protein from Polytomella magna)
- Us3m-2 (fragment) (12 kDa, Protein from Polytomella magna)
- Ms113 (7 kDa, Protein from Polytomella magna)
- Mtlsu-5 (45 kDa, RNA from Polytomella magna)
- Ul15m (22 kDa, Protein from Polytomella magna)
- Unknown (3 kDa, Protein from Polytomella magna)
- Ms29 (39 kDa, Protein from Polytomella magna)
- Zinc ion (65 Da, Ligand)
- Ul23m (18 kDa, Protein from Polytomella magna)
- Bs16m (14 kDa, Protein from Polytomella magna)
- Mtlsu-4 (23 kDa, RNA from Polytomella magna)
- Us5m (25 kDa, Protein from Polytomella magna)
- Ul16m (19 kDa, Protein from Polytomella magna)
- Mtlsu-3 (67 kDa, RNA from Polytomella magna)
- Bl31m (8 kDa, Protein from Polytomella magna)
- Bs18m (10 kDa, Protein from Polytomella magna)
- Bl19m (19 kDa, Protein from Polytomella magna)
- Us13m (12 kDa, Protein from Polytomella magna)
- Ml41 (10 kDa, Protein from Polytomella magna)
- Ml118 (40 kDa, Protein from Polytomella magna)
- Ml126 (44 kDa, Protein from Polytomella magna)
- Us17m (15 kDa, Protein from Polytomella magna)
- Ul13m (21 kDa, Protein from Polytomella magna)
- Ml120 (22 kDa, Protein from Polytomella magna)
- Ms111 (17 kDa, Protein from Polytomella magna)
- Mtlsu-7 (185 kDa, RNA from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Ms116 (10 kDa, Protein from Polytomella magna)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ml124 (52 kDa, Protein from Polytomella magna)
- Mtssu-3 (122 kDa, RNA from Polytomella magna)
- Us10m (45 kDa, Protein from Polytomella magna)
- Ms26 (19 kDa, Protein from Polytomella magna)
- Mtlsu-8 (112 kDa, RNA from Polytomella magna)
- Bl20m (13 kDa, Protein from Polytomella magna)
- Ms33 (9 kDa, Protein from Polytomella magna)
- Bl25m (28 kDa, Protein from Polytomella magna)
- Ml125 (22 kDa, Protein from Polytomella magna)
- Ms35 (19 kDa, Protein from Polytomella magna)
- Ml128 (2 kDa, Protein from Polytomella magna)
- Ms108 (5 kDa, Protein from Polytomella magna)
- Ml105 (15 kDa, Protein from Polytomella magna)
- Ms23 (19 kDa, Protein from Polytomella magna)
- Ms110 (11 kDa, Protein from Polytomella magna)
- Us8m (43 kDa, Protein from Polytomella magna)
- Ul4m (33 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Ul3m (34 kDa, Protein from Polytomella magna)
- Ml129 (8 kDa, Protein from Polytomella magna)
- Bl27m (16 kDa, Protein from Polytomella magna)
- Us6m (13 kDa, Protein from Polytomella magna)
- Us11m (12 kDa, Protein from Polytomella magna)
- Us4m-2 (fragment) (20 kDa, Protein from Polytomella magna)
- Ml40 (10 kDa, Protein from Polytomella magna)
- Us7m-2 (fragment) (9 kDa, Protein from Polytomella magna)
- Us3m (32 kDa, Protein from Polytomella magna)
- Magnesium ion (24 Da, Ligand)
- Ul29m (14 kDa, Protein from Polytomella magna)
- Bl24m (13 kDa, Protein from Polytomella magna)
- Ms114 (15 kDa, Protein from Polytomella magna)
- Ml123 (45 kDa, Protein from Polytomella magna)
- Ml46 (20 kDa, Protein from Polytomella magna)
- Us4m (25 kDa, Protein from Polytomella magna)
- Bl36m (5 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Mtssu-2 (68 kDa, RNA from Polytomella magna)
- Us2m (26 kDa, Protein from Polytomella magna)
- Bl17m (20 kDa, Protein from Polytomella magna)
- Mtlsu-1 (35 kDa, RNA from Polytomella magna)
- Ul9m (6 kDa, Protein from Polytomella magna)
- Ms38 (4 kDa, Protein from Polytomella magna)
- Ms34 (14 kDa, Protein from Polytomella magna)
- Mtssu-4 (112 kDa, RNA from Polytomella magna)
- Ul6m (27 kDa, Protein from Polytomella magna)
- Ms45 (30 kDa, Protein from Polytomella magna)
- Unknown (954 Da, Protein from Polytomella magna)
- Ms31 (66 kDa, Protein from Polytomella magna)
- Ml127 (16 kDa, Protein from Polytomella magna)
- Ms107 (42 kDa, Protein from Polytomella magna)
- Bl33m (5 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Mtlsu-2 (26 kDa, RNA from Polytomella magna)
- Us7m (12 kDa, Protein from Polytomella magna)
- Ul22m (21 kDa, Protein from Polytomella magna)
- Ml87 (16 kDa, Protein from Polytomella magna)
- Unknown (783 Da, Protein from Polytomella magna)
- Ms115 (40 kDa, Protein from Polytomella magna)
- Bs19m (10 kDa, Protein from Polytomella magna)
- Mtlsu-6 (42 kDa, RNA from Polytomella magna)
- Mt-5s (22 kDa, RNA from Polytomella magna)
- Bl21m (22 kDa, Protein from Polytomella magna)
- Bl28m (15 kDa, Protein from Polytomella magna)
- Ml121 (27 kDa, Protein from Polytomella magna)
- Ml63 (7 kDa, Protein from Polytomella magna)
- Ml43 (14 kDa, Protein from Polytomella magna)
- Ul2m (33 kDa, Protein from Polytomella magna)
- Ms112 (7 kDa, Protein from Polytomella magna)
- Bl34m (6 kDa, Protein from Polytomella magna)
- Bl35m (16 kDa, Protein from Polytomella magna)
- Us9m (32 kDa, Protein from Polytomella magna)
- Bs21m (8 kDa, Protein from Polytomella magna)
- Mitochondrial ribosome from polytomella magna (Complex from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
Large subunit of the Chlamydomonas reinhardtii mitoribosome
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7pkt
Q-score: 0.486
Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Forster F, Engel BD, Giege P, Drouard L, Hashem Y
Nat Commun (2021) 12 pp. 7176-7176 [ Pubmed: 34887394 DOI: doi:10.1038/s41467-021-27200-z ]
- Bl32m (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ml43 (16 kDa, Protein from Chlamydomonas reinhardtii)
- Unk1 (2 kDa, Protein from Chlamydomonas reinhardtii)
- Ul29m (14 kDa, Protein from Chlamydomonas reinhardtii)
- Ppr* (14 kDa, Protein from Chlamydomonas reinhardtii)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Mitochondrial ribosomal protein l33 (6 kDa, Protein from Chlamydomonas reinhardtii)
- Ml114 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l17 (27 kDa, Protein from Chlamydomonas reinhardtii)
- Kow domain-containing protein,ul24m (31 kDa, Protein from Chlamydomonas reinhardtii)
- Bl27m (18 kDa, Protein from Chlamydomonas reinhardtii)
- L4 rrna (38 kDa, RNA from Chlamydomonas reinhardtii)
- Ribosomal_tl5_c domain-containing protein (38 kDa, Protein from Chlamydomonas reinhardtii)
- Ml115 (72 kDa, Protein from Chlamydomonas reinhardtii)
- Ml119 (36 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l30 domain-containing protein (24 kDa, Protein from Chlamydomonas reinhardtii)
- Ml117 (75 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l17,bl17m (21 kDa, Protein from Chlamydomonas reinhardtii)
- Bl36m (3 kDa, Protein from Chlamydomonas reinhardtii)
- Ul4m (45 kDa, Protein from Chlamydomonas reinhardtii)
- Ul3m (44 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l18e/l15p domain-containing protein (35 kDa, Protein from Chlamydomonas reinhardtii)
- Ul5m (23 kDa, Protein from Chlamydomonas reinhardtii)
- Ul22m (39 kDa, Protein from Chlamydomonas reinhardtii)
- L6 rrna (43 kDa, RNA from Chlamydomonas reinhardtii)
- Bl21m (40 kDa, Protein from Chlamydomonas reinhardtii)
- 50s ribosomal protein l9, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l23 (25 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l2_c domain-containing protein (41 kDa, Protein from Chlamydomonas reinhardtii)
- Ml80 (27 kDa, Protein from Chlamydomonas reinhardtii)
- L3b rrna (59 kDa, RNA from Chlamydomonas reinhardtii)
- Unk2 (4 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l13 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Ml41 (12 kDa, Protein from Chlamydomonas reinhardtii)
- L5 rrna (47 kDa, RNA from Chlamydomonas reinhardtii)
- Bl28m (17 kDa, Protein from Chlamydomonas reinhardtii)
- Bl35m (17 kDa, Protein from Chlamydomonas reinhardtii)
- L2a rrna (27 kDa, RNA from Chlamydomonas reinhardtii)
- Plastid ribosomal protein l6 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Chlamydomonas reinhardtii)
- L1 rrna (51 kDa, RNA from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Ml113 (84 kDa, Protein from Chlamydomonas reinhardtii)
- Ml40 (17 kDa, Protein from Chlamydomonas reinhardtii)
- Zinc ion (65 Da, Ligand)
- Bl34m (29 kDa, Protein from Chlamydomonas reinhardtii)
- L7 rrna (186 kDa, RNA from Chlamydomonas reinhardtii)
- Ul14m (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ml59/64 (14 kDa, Protein from Chlamydomonas reinhardtii)
- 50s ribosomal protein l20 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ml116 (53 kDa, Protein from Chlamydomonas reinhardtii)
- Ml118 (64 kDa, Protein from Chlamydomonas reinhardtii)
- Large subunit of the mitochondrial ribosome of chlamydomonas reinhardtii (Complex from Chlamydomonas reinhardtii)
- L8 rrna (132 kDa, RNA from Chlamydomonas reinhardtii)
- Ml87 (23 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l16 domain-containing protein (27 kDa, Protein from Chlamydomonas reinhardtii)
- Ml63/57/60 (14 kDa, Protein from Chlamydomonas reinhardtii)
- L3a rrna (5s) (24 kDa, RNA from Chlamydomonas reinhardtii)
State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6yxy
Q-score: 0.508
Jaskolowski M, Ramrath DJF, Bieri P, Niemann M, Mattei S, Calderaro S, Leibundgut M, Horn EK, Boehringer D, Schneider A, Ban N
Mol Cell (2020) 79 pp. 629-644.e4 [ DOI: doi:10.1016/j.molcel.2020.06.030 Pubmed: 32679035 ]
- Ul22m (32 kDa, Protein from Trypanosoma brucei brucei)
- Ml84 (24 kDa, Protein from Trypanosoma brucei brucei)
- Ml43 (31 kDa, Protein from Trypanosoma brucei brucei)
- Ml92 (20 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf6 (40 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf12 (77 kDa, Protein from Trypanosoma brucei brucei)
- Ml80 (34 kDa, Protein from Trypanosoma brucei brucei)
- Mt-engb (71 kDa, Protein from Trypanosoma brucei brucei)
- Ml52 (167 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf4 (69 kDa, Protein from Trypanosoma brucei brucei)
- Ul14m (25 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Mt-laf2 (85 kDa, Protein from Trypanosoma brucei brucei)
- State b of the trypanosoma brucei mitoribosomal large subunit assembly intermediate (Complex from Trypanosoma brucei brucei)
- Ml42 (21 kDa, Protein from Trypanosoma brucei brucei)
- Ml95 (17 kDa, Protein from Trypanosoma brucei brucei)
- Ml53 (35 kDa, Protein from Trypanosoma brucei brucei)
- Bl35m (21 kDa, Protein from Trypanosoma brucei brucei)
- Mt-enga (65 kDa, Protein from Trypanosoma brucei brucei)
- Mtg1 (50 kDa, Protein from Trypanosoma brucei brucei)
- Unk (698 Da, Protein from Trypanosoma brucei brucei)
- Unk (15 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Mt-laf20 (6 kDa, Protein from Trypanosoma brucei brucei)
- Ml85 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml64 (28 kDa, Protein from Trypanosoma brucei brucei)
- Ml83 (25 kDa, Protein from Trypanosoma brucei brucei)
- Ml41 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ul24m (43 kDa, Protein from Trypanosoma brucei brucei)
- Ml100 (10 kDa, Protein from Trypanosoma brucei brucei)
- Unk (1 kDa, Protein from Trypanosoma brucei brucei)
- Bl9m (30 kDa, Protein from Trypanosoma brucei brucei)
- Ml81 (29 kDa, Protein from Trypanosoma brucei brucei)
- Bl17m (35 kDa, Protein from Trypanosoma brucei brucei)
- Ml68 (62 kDa, Protein from Trypanosoma brucei brucei)
- Ml99 (12 kDa, Protein from Trypanosoma brucei brucei)
- Ml93 (18 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Spermidine (145 Da, Ligand)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Mt-laf14 (82 kDa, Protein from Trypanosoma brucei brucei)
- S-(2-{[n-(2-hydroxy-4-{[hydroxy(oxido)phosphino]oxy}-3,3-dimethylbutanoyl)-beta-alanyl]amino}ethyl) decanethioate (496 Da, Ligand)
- Ml90 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml101 (28 kDa, Protein from Trypanosoma brucei brucei)
- Ml98 (12 kDa, Protein from Trypanosoma brucei brucei)
- Mt-acp (16 kDa, Protein from Trypanosoma brucei brucei)
- Ul11m (40 kDa, Protein from Trypanosoma brucei brucei)
- Ml70 (62 kDa, Protein from Trypanosoma brucei brucei)
- Ml72 (49 kDa, Protein from Trypanosoma brucei brucei)
- Ml74 (39 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Ul13m (24 kDa, Protein from Trypanosoma brucei brucei)
- Ml71 (50 kDa, Protein from Trypanosoma brucei brucei)
- Ul4m (53 kDa, Protein from Trypanosoma brucei brucei)
- Ml86 (22 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf15a (34 kDa, Protein from Trypanosoma brucei brucei)
- Ul23m (28 kDa, Protein from Trypanosoma brucei brucei)
- Ml78 (35 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Bl19m (16 kDa, Protein from Trypanosoma brucei brucei)
- Ml67 (93 kDa, Protein from Trypanosoma brucei brucei)
- Ml76 (39 kDa, Protein from Trypanosoma brucei brucei)
- Ml87 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ul3m (55 kDa, Protein from Trypanosoma brucei brucei)
- Malsu1 (39 kDa, Protein from Trypanosoma brucei brucei)
- Sodium ion (22 Da, Ligand)
- 12s ribosomal rna (373 kDa, RNA from Trypanosoma brucei brucei)
- Ml77 (43 kDa, Protein from Trypanosoma brucei brucei)
- Ml89 (22 kDa, Protein from Trypanosoma brucei brucei)
- Bl32m (9 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf3 (46 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf18 (58 kDa, Protein from Trypanosoma brucei brucei)
- Ml94 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf7 (18 kDa, Protein from Trypanosoma brucei brucei)
- Ml49 (24 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf5 (67 kDa, Protein from Trypanosoma brucei brucei)
- Bl20m (24 kDa, Protein from Trypanosoma brucei brucei)
- Ml75 (39 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ul29m (54 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf19 (12 kDa, Protein from Trypanosoma brucei brucei)
- Bl21m (20 kDa, Protein from Trypanosoma brucei brucei)
- Unk (6 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf8 (68 kDa, Protein from Trypanosoma brucei brucei)
- Ml63 (18 kDa, Protein from Trypanosoma brucei brucei)
- Bl28m (28 kDa, Protein from Trypanosoma brucei brucei)
- Ul30m (25 kDa, Protein from Trypanosoma brucei brucei)
- Ul15m (43 kDa, Protein from Trypanosoma brucei brucei)
- Ml88 (22 kDa, Protein from Trypanosoma brucei brucei)
- L0r8f8 (13 kDa, Protein from Trypanosoma brucei brucei)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gaw
Q-score: 0.449
Kummer E, Leibundgut M, Rackham O, Lee RG, Boehringer D, Filipovska A, Ban N
Nature (2018) 560 pp. 263-267 [ Pubmed: 30089917 DOI: doi:10.1038/s41586-018-0373-y ]
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Mt-co3 mrna, mitochondrial (63 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l48 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l40, mitochondrial isoform 1 (24 kDa, Protein from Sus scrofa)
- Ml65 (49 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Ms33 (12 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Trna-phe, mitochondrial (23 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Bl32m (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Bs16m (15 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Uncharacterized protein (27 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Ml45 (35 kDa, Protein from Sus scrofa)
- N-formylmethionine (177 Da, Ligand)
- Mitochondrial ribosomal protein s6 (14 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Unassigned secondary structure elements (5 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Translation initiation factor if-2, mitochondrial (72 kDa, Protein from Homo sapiens)
- Death associated protein 3 (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Ml53 (12 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Sus scrofa)
- P-site fmet-trnamet, mitochondrial (22 kDa, RNA from Homo sapiens)
- Ml50 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- 12s ribosomal rna, mitochondrial (308 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Sodium ion (22 Da, Ligand)
- Ict1 (38 kDa, Protein from Sus scrofa)
- Ml43 (17 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Ms27 (51 kDa, Protein from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Ms31 (44 kDa, Protein from Sus scrofa)
- 16s ribosomal rna, mitochondrial (504 kDa, RNA from Sus scrofa)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Sus scrofa)
- Unassigned secondary structure elements (1 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l17, mitochondrial (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Sus scrofa)
- Mammalian mitochondrial translation initiation complex (2 MDa, Complex from sus sucorfa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Sus scrofa)
Structure of the yeast mitochondrial ribosome - Class A
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 5mrc
Q-score: 0.443
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (2017) 355 pp. 528-531 [ Pubmed: 28154081 DOI: doi:10.1126/science.aal2415 ]
- Bl32m (13 kDa, Protein from Baker's yeast)
- Bl28m (25 kDa, Protein from Baker's yeast)
- Ul2m (43 kDa, Protein from Baker's yeast)
- Ms33 (11 kDa, Protein from Baker's yeast)
- Ml38 (40 kDa, Protein from Baker's yeast)
- Bl33m (7 kDa, Protein from Baker's yeast)
- Ms44 (39 kDa, Protein from Baker's yeast)
- Us10m (21 kDa, Protein from Baker's yeast)
- Us14m (13 kDa, Protein from Baker's yeast)
- Bl21m (13 kDa, Protein from Baker's yeast)
- Ms45 (36 kDa, Protein from Baker's yeast)
- Ul5m (31 kDa, Protein from Baker's yeast)
- Us11m (16 kDa, Protein from Baker's yeast)
- Ul23m (24 kDa, Protein from Baker's yeast)
- Ml44 (36 kDa, Protein from Baker's yeast)
- Us2m (29 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- Us3m (47 kDa, Protein from Baker's yeast)
- Bs1m (39 kDa, Protein from Baker's yeast)
- Bl19m (17 kDa, Protein from Baker's yeast)
- Us13m (13 kDa, Protein from Baker's yeast)
- Ms43 (36 kDa, Protein from Baker's yeast)
- Ms42 (29 kDa, Protein from Baker's yeast)
- Ul16m (22 kDa, Protein from Baker's yeast)
- Bs18m (11 kDa, Protein from Baker's yeast)
- Unknown protein sequence 2 (12 kDa, Protein from Baker's yeast)
- Ul22m (25 kDa, Protein from Baker's yeast)
- Bl35m (7 kDa, Protein from Baker's yeast)
- Yeast mitochondrial ribosome - class a (Complex from Saccharomyces cerevisiae)
- Ul29m (26 kDa, Protein from Baker's yeast)
- Unknown protein sequence 1 (8 kDa, Protein from Baker's yeast)
- Ms26 (26 kDa, Protein from Baker's yeast)
- Ml40 (13 kDa, Protein from Baker's yeast)
- Bl34m (5 kDa, Protein from Baker's yeast)
- Ms38 (4 kDa, Protein from Baker's yeast)
- Ml59 (18 kDa, Protein from Baker's yeast)
- Ms35 (32 kDa, Protein from Baker's yeast)
- Bs21m (10 kDa, Protein from Baker's yeast)
- Us19m (9 kDa, Protein from Baker's yeast)
- Trna (24 kDa, RNA from Baker's yeast)
- Us8m (17 kDa, Protein from Baker's yeast)
- Ms47 (51 kDa, Protein from Baker's yeast)
- Ml46 (32 kDa, Protein from Baker's yeast)
- Us9m (27 kDa, Protein from Baker's yeast)
- Ul4m (28 kDa, Protein from Baker's yeast)
- Ms41 (11 kDa, Protein from Baker's yeast)
- 15s ribosomal rna (528 kDa, RNA from Baker's yeast)
- Bs16m (13 kDa, Protein from Baker's yeast)
- Ml49 (12 kDa, Protein from Baker's yeast)
- Us17m (27 kDa, Protein from Baker's yeast)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Us12m (13 kDa, Protein from Baker's yeast)
- Bl9m (8 kDa, Protein from Baker's yeast)
- Ms23 (27 kDa, Protein from Baker's yeast)
- Ml67 (25 kDa, Protein from Baker's yeast)
- Bl31m (20 kDa, Protein from Baker's yeast)
- Ms29 (45 kDa, Protein from Baker's yeast)
- Bl17m (26 kDa, Protein from Baker's yeast)
- Ul30m (9 kDa, Protein from Baker's yeast)
- Us7m (18 kDa, Protein from Baker's yeast)
- Ml60 (14 kDa, Protein from Baker's yeast)
- Bl36m (4 kDa, Protein from Baker's yeast)
- Ms46 (18 kDa, Protein from Baker's yeast)
- Magnesium ion (24 Da, Ligand)
- Bl27m (39 kDa, Protein from Baker's yeast)
- Sodium ion (22 Da, Ligand)
- Ul6m (21 kDa, Protein from Baker's yeast)
- Ul14m (14 kDa, Protein from Baker's yeast)
- Ms37 (10 kDa, Protein from Baker's yeast)
- Ul24m (33 kDa, Protein from Baker's yeast)
- Ul15m (24 kDa, Protein from Baker's yeast)
- Ml58 (20 kDa, Protein from Baker's yeast)
- Ul13m (18 kDa, Protein from Baker's yeast)
- Us4m (56 kDa, Protein from Baker's yeast)
- Ml50 (30 kDa, Protein from Baker's yeast)
- Ml57 (23 kDa, Protein from Baker's yeast)
- Bs6m (14 kDa, Protein from Baker's yeast)
- 21s ribosomal rna (1 MDa, RNA from Baker's yeast)
- Ul3m (27 kDa, Protein from Baker's yeast)
- Us5m (33 kDa, Protein from Baker's yeast)
- Us15m (29 kDa, Protein from Baker's yeast)
- Ml41 (14 kDa, Protein from Baker's yeast)
- Ml43 (15 kDa, Protein from Baker's yeast)