State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6yxy
Q-score: 0.508
Jaskolowski M, Ramrath DJF, Bieri P, Niemann M, Mattei S, Calderaro S, Leibundgut M, Horn EK, Boehringer D, Schneider A, Ban N
Mol Cell (2020) 79 pp. 629-644.e4 [ DOI: doi:10.1016/j.molcel.2020.06.030 Pubmed: 32679035 ]
- Ml41 (22 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf20 (6 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf15a (34 kDa, Protein from Trypanosoma brucei brucei)
- Ml98 (12 kDa, Protein from Trypanosoma brucei brucei)
- Ml88 (22 kDa, Protein from Trypanosoma brucei brucei)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ml90 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml72 (49 kDa, Protein from Trypanosoma brucei brucei)
- Bl17m (35 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf14 (82 kDa, Protein from Trypanosoma brucei brucei)
- Mtg1 (50 kDa, Protein from Trypanosoma brucei brucei)
- Ml86 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ul3m (55 kDa, Protein from Trypanosoma brucei brucei)
- Ul15m (43 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf3 (46 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf2 (85 kDa, Protein from Trypanosoma brucei brucei)
- Unk (15 kDa, Protein from Trypanosoma brucei brucei)
- Ul29m (54 kDa, Protein from Trypanosoma brucei brucei)
- Ml84 (24 kDa, Protein from Trypanosoma brucei brucei)
- Ml89 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml70 (62 kDa, Protein from Trypanosoma brucei brucei)
- Ml81 (29 kDa, Protein from Trypanosoma brucei brucei)
- Spermidine (145 Da, Ligand)
- Bl32m (9 kDa, Protein from Trypanosoma brucei brucei)
- State b of the trypanosoma brucei mitoribosomal large subunit assembly intermediate (Complex from Trypanosoma brucei brucei)
- Ml93 (18 kDa, Protein from Trypanosoma brucei brucei)
- Bl28m (28 kDa, Protein from Trypanosoma brucei brucei)
- Mt-engb (71 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Ml85 (22 kDa, Protein from Trypanosoma brucei brucei)
- Unk (1 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf12 (77 kDa, Protein from Trypanosoma brucei brucei)
- Ml64 (28 kDa, Protein from Trypanosoma brucei brucei)
- Unk (698 Da, Protein from Trypanosoma brucei brucei)
- S-(2-{[n-(2-hydroxy-4-{[hydroxy(oxido)phosphino]oxy}-3,3-dimethylbutanoyl)-beta-alanyl]amino}ethyl) decanethioate (496 Da, Ligand)
- Unk (6 kDa, Protein from Trypanosoma brucei brucei)
- Ml100 (10 kDa, Protein from Trypanosoma brucei brucei)
- Ul4m (53 kDa, Protein from Trypanosoma brucei brucei)
- Ml87 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml75 (39 kDa, Protein from Trypanosoma brucei brucei)
- Malsu1 (39 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf19 (12 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ul11m (40 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf18 (58 kDa, Protein from Trypanosoma brucei brucei)
- Ul13m (24 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf6 (40 kDa, Protein from Trypanosoma brucei brucei)
- Ml94 (17 kDa, Protein from Trypanosoma brucei brucei)
- Bl20m (24 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mt-enga (65 kDa, Protein from Trypanosoma brucei brucei)
- Bl35m (21 kDa, Protein from Trypanosoma brucei brucei)
- Sodium ion (22 Da, Ligand)
- Ml71 (50 kDa, Protein from Trypanosoma brucei brucei)
- Ml77 (43 kDa, Protein from Trypanosoma brucei brucei)
- Ml83 (25 kDa, Protein from Trypanosoma brucei brucei)
- Ml92 (20 kDa, Protein from Trypanosoma brucei brucei)
- L0r8f8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Ul22m (32 kDa, Protein from Trypanosoma brucei brucei)
- Ml95 (17 kDa, Protein from Trypanosoma brucei brucei)
- Ml80 (34 kDa, Protein from Trypanosoma brucei brucei)
- Ul23m (28 kDa, Protein from Trypanosoma brucei brucei)
- Ml42 (21 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf4 (69 kDa, Protein from Trypanosoma brucei brucei)
- Ul24m (43 kDa, Protein from Trypanosoma brucei brucei)
- Bl9m (30 kDa, Protein from Trypanosoma brucei brucei)
- Ml101 (28 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf5 (67 kDa, Protein from Trypanosoma brucei brucei)
- Ul14m (25 kDa, Protein from Trypanosoma brucei brucei)
- 12s ribosomal rna (373 kDa, RNA from Trypanosoma brucei brucei)
- Bl19m (16 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf7 (18 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf8 (68 kDa, Protein from Trypanosoma brucei brucei)
- Ml99 (12 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Ml76 (39 kDa, Protein from Trypanosoma brucei brucei)
- Ml53 (35 kDa, Protein from Trypanosoma brucei brucei)
- Ml49 (24 kDa, Protein from Trypanosoma brucei brucei)
- Ml67 (93 kDa, Protein from Trypanosoma brucei brucei)
- Ml78 (35 kDa, Protein from Trypanosoma brucei brucei)
- Mt-acp (16 kDa, Protein from Trypanosoma brucei brucei)
- Ml52 (167 kDa, Protein from Trypanosoma brucei brucei)
- Ml74 (39 kDa, Protein from Trypanosoma brucei brucei)
- Ul30m (25 kDa, Protein from Trypanosoma brucei brucei)
- Ml63 (18 kDa, Protein from Trypanosoma brucei brucei)
- Ml43 (31 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Ml68 (62 kDa, Protein from Trypanosoma brucei brucei)
- Bl21m (20 kDa, Protein from Trypanosoma brucei brucei)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gaw
Q-score: 0.449
Kummer E, Leibundgut M, Rackham O, Lee RG, Boehringer D, Filipovska A, Ban N
Nature (2018) 560 pp. 263-267 [ DOI: doi:10.1038/s41586-018-0373-y Pubmed: 30089917 ]
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- 12s ribosomal rna, mitochondrial (308 kDa, RNA from Sus scrofa)
- 28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Sus scrofa)
- Ms27 (51 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l48 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein s6 (14 kDa, Protein from Sus scrofa)
- Ml53 (12 kDa, Protein from Sus scrofa)
- 16s ribosomal rna, mitochondrial (504 kDa, RNA from Sus scrofa)
- Uncharacterized protein (27 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Ml43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- Bl32m (21 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l40, mitochondrial isoform 1 (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Sus scrofa)
- Ml65 (49 kDa, Protein from Sus scrofa)
- Ms31 (44 kDa, Protein from Sus scrofa)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Sus scrofa)
- Mt-co3 mrna, mitochondrial (63 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Ml50 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Bs16m (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Sus scrofa)
- Ms33 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Sus scrofa)
- P-site fmet-trnamet, mitochondrial (22 kDa, RNA from Homo sapiens)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Translation initiation factor if-2, mitochondrial (72 kDa, Protein from Homo sapiens)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Death associated protein 3 (45 kDa, Protein from Sus scrofa)
- Trna-phe, mitochondrial (23 kDa, RNA from Sus scrofa)
- N-formylmethionine (177 Da, Ligand)
- Unassigned secondary structure elements (1 kDa, Protein from Sus scrofa)
- Mammalian mitochondrial translation initiation complex (2 MDa, Complex from sus sucorfa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Ml45 (35 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l17, mitochondrial (19 kDa, Protein from Sus scrofa)
- Ict1 (38 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Sus scrofa)
- Sodium ion (22 Da, Ligand)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Unassigned secondary structure elements (5 kDa, Protein from Sus scrofa)