Non-translating S. pombe ribosome
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9axt
Q-score: 0.471
Gemin O, Gluc M, Rosa H, Purdy M, Niemann M, Peskova Y, Mattei S, Jomaa A
Nat Commun (2024) 15 pp. 8666-8666 [ DOI: doi:10.1038/s41467-024-52911-4 Pubmed: 39379376 ]
- Large ribosomal subunit protein el39 (6 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es25a (9 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el6 (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el33a (12 kDa, Protein from Schizosaccharomyces pombe)
- 5.8s ribosomal rna (52 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el30a (11 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us15 (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el31 (13 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el37b (10 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us9a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es24a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul13a (22 kDa, Protein from Schizosaccharomyces pombe)
- 18s ribosomal rna (593 kDa, RNA from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us17a (17 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es28a (7 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el32a (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us4b (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul14b (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul5a (19 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Schizosaccharomyces pombe)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein el27a (15 kDa, Protein from Schizosaccharomyces pombe)
- Non-translating s. pombe ribosome (3 MDa, Complex from Schizosaccharomyces pombe 972h-)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es12a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul30c (28 kDa, Protein from Schizosaccharomyces pombe)
- 5s ribosomal rna (78 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el14 (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es26b (13 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es19a (16 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es6b (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul23a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es17a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us13b (17 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul22a (20 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el8 (28 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul16a (25 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es7 (21 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us19b (17 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul3a (43 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us11b (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el13 (23 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el38a (8 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es4c (29 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el34b (12 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el15b (23 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul4a (39 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el36b (11 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es8b (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el28 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el18b (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es30b (6 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us7a (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul6b (21 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us2a (31 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es10b (16 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es1b (28 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el43a (10 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el20a (20 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el22 (13 kDa, Protein from Schizosaccharomyces pombe)
- 28s ribosomal rna (1 MDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul18b (33 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul2c (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el29 (7 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el24b (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el21b (18 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el19b (22 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us8a (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us12a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul15b (16 kDa, Protein from Schizosaccharomyces pombe)
Non-translating S. pombe ribosome large subunit
Resolution: 1.94 Å
EM Method: Single-particle
Fitted PDBs: 9axu
Q-score: 0.661
Gemin O, Gluc M, Rosa H, Purdy M, Niemann M, Peskova Y, Mattei S, Jomaa A
Nat Commun (2024) 15 pp. 8666-8666 [ DOI: doi:10.1038/s41467-024-52911-4 Pubmed: 39379376 ]
- Large ribosomal subunit protein el42 (12 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul22a (20 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul5a (19 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el8 (28 kDa, Protein from Schizosaccharomyces pombe)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ul6b (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el6 (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el33a (12 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul16a (25 kDa, Protein from Schizosaccharomyces pombe)
- 5.8s ribosomal rna (52 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el27a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el30a (11 kDa, Protein from Schizosaccharomyces pombe)
- Non-translating s. pombe ribosome large subunit (3 MDa, Complex from Schizosaccharomyces pombe 972h-)
- Large ribosomal subunit protein ul3a (43 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el43a (10 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el20a (20 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el31 (13 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el13 (23 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el22 (13 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul30c (28 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el37b (10 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el38a (8 kDa, Protein from Schizosaccharomyces pombe)
- 28s ribosomal rna (1 MDa, RNA from Schizosaccharomyces pombe)
- 5s ribosomal rna (78 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul18b (33 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el14 (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el34b (12 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul13a (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul2c (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el29 (7 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el24b (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el32a (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el15b (23 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul4a (39 kDa, Protein from Schizosaccharomyces pombe)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein el21b (18 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul14b (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el19b (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el36b (11 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el28 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul23a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul15b (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el18b (21 kDa, Protein from Schizosaccharomyces pombe)
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9axv
Q-score: 0.473
Gemin O, Gluc M, Rosa H, Purdy M, Niemann M, Peskova Y, Mattei S, Jomaa A
Nat Commun (2024) 15 pp. 8666-8666 [ DOI: doi:10.1038/s41467-024-52911-4 Pubmed: 39379376 ]
- Large ribosomal subunit protein el39 (6 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es25a (9 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el6 (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el33a (12 kDa, Protein from Schizosaccharomyces pombe)
- 5.8s ribosomal rna (52 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el30a (11 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us15 (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el31 (13 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el37b (10 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us9a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es24a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul13a (22 kDa, Protein from Schizosaccharomyces pombe)
- 18s ribosomal rna (593 kDa, RNA from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us17a (17 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es28a (7 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el32a (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us4b (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul14b (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul5a (19 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Schizosaccharomyces pombe)
- Translating s. pombe ribosome (3 MDa, Complex from Schizosaccharomyces pombe 972h-)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein el27a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es12a (15 kDa, Protein from Schizosaccharomyces pombe)
- A/p trna (24 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul30c (28 kDa, Protein from Schizosaccharomyces pombe)
- 5s ribosomal rna (78 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el14 (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es26b (13 kDa, Protein from Schizosaccharomyces pombe)
- Trna (24 kDa, RNA from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es19a (16 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es6b (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul23a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es17a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us13b (17 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul22a (20 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el8 (28 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein rack1 (34 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul16a (25 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es7 (21 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us19b (17 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul3a (43 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us11b (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el13 (23 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el38a (8 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es4c (29 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el34b (12 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el15b (23 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul4a (39 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el36b (11 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es8b (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el28 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el18b (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es30b (6 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us7a (22 kDa, Protein from Schizosaccharomyces pombe)
- Mrna (3 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul6b (21 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us2a (31 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es10b (16 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es1b (28 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el43a (10 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el20a (20 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el22 (13 kDa, Protein from Schizosaccharomyces pombe)
- 28s ribosomal rna (1 MDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul18b (33 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul2c (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el29 (7 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el24b (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el21b (18 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el19b (22 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us8a (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us12a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul15b (16 kDa, Protein from Schizosaccharomyces pombe)
Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7nfx
Q-score: 0.432
Lee JH, Jomaa A, Chung S, Hwang Fu YH, Qian R, Sun X, Hsieh HH, Chandrasekar S, Bi X, Mattei S, Boehringer D, Weiss S, Ban N, Shan SO
Sci Adv (2021) 7 [ Pubmed: 34020957 DOI: doi:10.1126/sciadv.abg0942 ]
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 19 kda protein (16 kDa, Protein from Homo sapiens)
- Signal sequence (1 kDa, Protein from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- Signal sequence (Complex from Homo sapiens)
- Signal recognition particle receptor subunit alpha (69 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle subunit srp68 (70 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 14 kda protein (14 kDa, Protein from Homo sapiens)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Signal recognition particle subunit srp72 (74 kDa, Protein from Homo sapiens)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- El36 (12 kDa, Protein from Oryctolagus cuniculus)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Srp (Complex from Homo sapiens)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle receptor subunit beta (29 kDa, Protein from Homo sapiens)
- Signal recognition particle 54 kda protein (55 kDa, Protein from Homo sapiens)
- Srp rna 7sl (96 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Signal recognition particle 9 kda protein (10 kDa, Protein from Homo sapiens)
- Ribosome nascent chain complex with srp and srp receptor (3 MDa, Complex)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal proteins (Complex from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
State A of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6yxx
Q-score: 0.389
Jaskolowski M, Ramrath DJF, Bieri P, Niemann M, Mattei S, Calderaro S, Leibundgut M, Horn EK, Boehringer D, Schneider A, Ban N
Mol Cell (2020) 79 pp. 629-644.e4 [ DOI: doi:10.1016/j.molcel.2020.06.030 Pubmed: 32679035 ]
- Ml41 (22 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Gtp-binding protein, putative (50 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf21 (56 kDa, Protein from Trypanosoma brucei brucei)
- Kripp3 (58 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf15a (34 kDa, Protein from Trypanosoma brucei brucei)
- Ml98 (12 kDa, Protein from Trypanosoma brucei brucei)
- Ml88 (22 kDa, Protein from Trypanosoma brucei brucei)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ribosomal_l18e/l15p domain-containing protein (43 kDa, Protein from Trypanosoma brucei brucei)
- Kripp9 (89 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf14 (82 kDa, Protein from Trypanosoma brucei brucei)
- Ml86 (22 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf24 (49 kDa, Protein from Trypanosoma brucei brucei)
- Spou_methylase domain-containing protein (67 kDa, Protein from Trypanosoma brucei brucei)
- Ul29m (54 kDa, Protein from Trypanosoma brucei brucei)
- Ml84 (24 kDa, Protein from Trypanosoma brucei brucei)
- Ml89 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml70 (62 kDa, Protein from Trypanosoma brucei brucei)
- Ml81 (29 kDa, Protein from Trypanosoma brucei brucei)
- Unk (7 kDa, Protein from Trypanosoma brucei brucei)
- Bl32m (9 kDa, Protein from Trypanosoma brucei brucei)
- State b of the trypanosoma brucei mitoribosomal large subunit assembly intermediate (Complex from Trypanosoma brucei brucei)
- Acyl carrier protein (16 kDa, Protein from Trypanosoma brucei brucei)
- Lipase (class 3) (58 kDa, Protein from Trypanosoma brucei brucei)
- Ml93 (18 kDa, Protein from Trypanosoma brucei brucei)
- Bl28m (28 kDa, Protein from Trypanosoma brucei brucei)
- Duf4379 domain-containing protein (63 kDa, Protein from Trypanosoma brucei brucei)
- 12s ribosomal rna (365 kDa, RNA from Trypanosoma brucei brucei)
- Mt-laf27 (11 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Ml85 (22 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf12 (77 kDa, Protein from Trypanosoma brucei brucei)
- Ml64 (28 kDa, Protein from Trypanosoma brucei brucei)
- Pseudouridylate synthase, putative (46 kDa, Protein from Trypanosoma brucei brucei)
- Unk (698 Da, Protein from Trypanosoma brucei brucei)
- S-(2-{[n-(2-hydroxy-4-{[hydroxy(oxido)phosphino]oxy}-3,3-dimethylbutanoyl)-beta-alanyl]amino}ethyl) decanethioate (496 Da, Ligand)
- Mt-laf23 (63 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal_l9 domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Peptidyl-prolyl cis-trans isomerase (20 kDa, Protein from Trypanosoma brucei brucei)
- Ml87 (22 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf25 (32 kDa, Protein from Trypanosoma brucei brucei)
- Ml75 (39 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf19 (12 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ml94 (17 kDa, Protein from Trypanosoma brucei brucei)
- Spou_methylase domain-containing protein (40 kDa, Protein from Trypanosoma brucei brucei)
- Bl20m (24 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mt-enga (65 kDa, Protein from Trypanosoma brucei brucei)
- Bl35m (21 kDa, Protein from Trypanosoma brucei brucei)
- Tetratricopeptide repeat (49 kDa, Protein from Trypanosoma brucei brucei)
- Sodium ion (22 Da, Ligand)
- Unk (20 kDa, Protein from Trypanosoma brucei brucei)
- Dead-box helicase, putative (85 kDa, Protein from Trypanosoma brucei brucei)
- Ml71 (50 kDa, Protein from Trypanosoma brucei brucei)
- Unk (1 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l4/l1 family, putative (53 kDa, Protein from Trypanosoma brucei brucei)
- Ul22m (32 kDa, Protein from Trypanosoma brucei brucei)
- Ml95 (17 kDa, Protein from Trypanosoma brucei brucei)
- Unk (869 Da, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l3 mitochondrial, putative (55 kDa, Protein from Trypanosoma brucei brucei)
- Ml80 (34 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l11, putative (40 kDa, Protein from Trypanosoma brucei brucei)
- Ul23m (28 kDa, Protein from Trypanosoma brucei brucei)
- Ml42 (21 kDa, Protein from Trypanosoma brucei brucei)
- Chaperone protein dnaj, putative (43 kDa, Protein from Trypanosoma brucei brucei)
- Ul24m (43 kDa, Protein from Trypanosoma brucei brucei)
- 50s ribosomal protein l17, putative (35 kDa, Protein from Trypanosoma brucei brucei)
- Peptidyl-prolyl cis-trans isomerase (25 kDa, Protein from Trypanosoma brucei brucei)
- Unk (6 kDa, Protein from Trypanosoma brucei brucei)
- Bl19m (16 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf29 (38 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf7 (18 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf8 (68 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- L51_s25_ci-b8 domain-containing protein (31 kDa, Protein from Trypanosoma brucei brucei)
- 50s ribosomal protein l13, putative (24 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Ml76 (39 kDa, Protein from Trypanosoma brucei brucei)
- Ml53 (35 kDa, Protein from Trypanosoma brucei brucei)
- Ml49 (24 kDa, Protein from Trypanosoma brucei brucei)
- Ml67 (93 kDa, Protein from Trypanosoma brucei brucei)
- Ml78 (35 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf4 (69 kDa, Protein from Trypanosoma brucei brucei)
- Ml52 (167 kDa, Protein from Trypanosoma brucei brucei)
- Ml74 (39 kDa, Protein from Trypanosoma brucei brucei)
- Ul30m (25 kDa, Protein from Trypanosoma brucei brucei)
- Ml63 (18 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Ml68 (62 kDa, Protein from Trypanosoma brucei brucei)
- Bl21m (20 kDa, Protein from Trypanosoma brucei brucei)
State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6yxy
Q-score: 0.508
Jaskolowski M, Ramrath DJF, Bieri P, Niemann M, Mattei S, Calderaro S, Leibundgut M, Horn EK, Boehringer D, Schneider A, Ban N
Mol Cell (2020) 79 pp. 629-644.e4 [ DOI: doi:10.1016/j.molcel.2020.06.030 Pubmed: 32679035 ]
- Ml41 (22 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf20 (6 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf15a (34 kDa, Protein from Trypanosoma brucei brucei)
- Ml98 (12 kDa, Protein from Trypanosoma brucei brucei)
- Ml88 (22 kDa, Protein from Trypanosoma brucei brucei)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ml90 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml72 (49 kDa, Protein from Trypanosoma brucei brucei)
- Bl17m (35 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf14 (82 kDa, Protein from Trypanosoma brucei brucei)
- Mtg1 (50 kDa, Protein from Trypanosoma brucei brucei)
- Ml86 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ul3m (55 kDa, Protein from Trypanosoma brucei brucei)
- Ul15m (43 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf3 (46 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf2 (85 kDa, Protein from Trypanosoma brucei brucei)
- Unk (15 kDa, Protein from Trypanosoma brucei brucei)
- Ul29m (54 kDa, Protein from Trypanosoma brucei brucei)
- Ml84 (24 kDa, Protein from Trypanosoma brucei brucei)
- Ml89 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml70 (62 kDa, Protein from Trypanosoma brucei brucei)
- Ml81 (29 kDa, Protein from Trypanosoma brucei brucei)
- Spermidine (145 Da, Ligand)
- Bl32m (9 kDa, Protein from Trypanosoma brucei brucei)
- State b of the trypanosoma brucei mitoribosomal large subunit assembly intermediate (Complex from Trypanosoma brucei brucei)
- Ml93 (18 kDa, Protein from Trypanosoma brucei brucei)
- Bl28m (28 kDa, Protein from Trypanosoma brucei brucei)
- Mt-engb (71 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Ml85 (22 kDa, Protein from Trypanosoma brucei brucei)
- Unk (1 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf12 (77 kDa, Protein from Trypanosoma brucei brucei)
- Ml64 (28 kDa, Protein from Trypanosoma brucei brucei)
- Unk (698 Da, Protein from Trypanosoma brucei brucei)
- S-(2-{[n-(2-hydroxy-4-{[hydroxy(oxido)phosphino]oxy}-3,3-dimethylbutanoyl)-beta-alanyl]amino}ethyl) decanethioate (496 Da, Ligand)
- Unk (6 kDa, Protein from Trypanosoma brucei brucei)
- Ml100 (10 kDa, Protein from Trypanosoma brucei brucei)
- Ul4m (53 kDa, Protein from Trypanosoma brucei brucei)
- Ml87 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml75 (39 kDa, Protein from Trypanosoma brucei brucei)
- Malsu1 (39 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf19 (12 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ul11m (40 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf18 (58 kDa, Protein from Trypanosoma brucei brucei)
- Ul13m (24 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf6 (40 kDa, Protein from Trypanosoma brucei brucei)
- Ml94 (17 kDa, Protein from Trypanosoma brucei brucei)
- Bl20m (24 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mt-enga (65 kDa, Protein from Trypanosoma brucei brucei)
- Bl35m (21 kDa, Protein from Trypanosoma brucei brucei)
- Sodium ion (22 Da, Ligand)
- Ml71 (50 kDa, Protein from Trypanosoma brucei brucei)
- Ml77 (43 kDa, Protein from Trypanosoma brucei brucei)
- Ml83 (25 kDa, Protein from Trypanosoma brucei brucei)
- Ml92 (20 kDa, Protein from Trypanosoma brucei brucei)
- L0r8f8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Ul22m (32 kDa, Protein from Trypanosoma brucei brucei)
- Ml95 (17 kDa, Protein from Trypanosoma brucei brucei)
- Ml80 (34 kDa, Protein from Trypanosoma brucei brucei)
- Ul23m (28 kDa, Protein from Trypanosoma brucei brucei)
- Ml42 (21 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf4 (69 kDa, Protein from Trypanosoma brucei brucei)
- Ul24m (43 kDa, Protein from Trypanosoma brucei brucei)
- Bl9m (30 kDa, Protein from Trypanosoma brucei brucei)
- Ml101 (28 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf5 (67 kDa, Protein from Trypanosoma brucei brucei)
- Ul14m (25 kDa, Protein from Trypanosoma brucei brucei)
- 12s ribosomal rna (373 kDa, RNA from Trypanosoma brucei brucei)
- Bl19m (16 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf7 (18 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf8 (68 kDa, Protein from Trypanosoma brucei brucei)
- Ml99 (12 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Ml76 (39 kDa, Protein from Trypanosoma brucei brucei)
- Ml53 (35 kDa, Protein from Trypanosoma brucei brucei)
- Ml49 (24 kDa, Protein from Trypanosoma brucei brucei)
- Ml67 (93 kDa, Protein from Trypanosoma brucei brucei)
- Ml78 (35 kDa, Protein from Trypanosoma brucei brucei)
- Mt-acp (16 kDa, Protein from Trypanosoma brucei brucei)
- Ml52 (167 kDa, Protein from Trypanosoma brucei brucei)
- Ml74 (39 kDa, Protein from Trypanosoma brucei brucei)
- Ul30m (25 kDa, Protein from Trypanosoma brucei brucei)
- Ml63 (18 kDa, Protein from Trypanosoma brucei brucei)
- Ml43 (31 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Ml68 (62 kDa, Protein from Trypanosoma brucei brucei)
- Bl21m (20 kDa, Protein from Trypanosoma brucei brucei)