E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Resolution: 1.95 Å
EM Method: Single-particle
Fitted PDBs: 9d89
Q-score: 0.692
Panteleev PV, Pichkur EB, Kruglikov RN, Paleskava A, Shulenina OV, Bolosov IA, Bogdanov IV, Safronova VN, Balandin SV, Marina VI, Kombarova TI, Korobova OV, Shamova OV, Myasnikov AG, Borzilov AI, Osterman IA, Sergiev PV, Bogdanov AA, Dontsova OA, Konevega AL, Ovchinnikova TV
Nat Commun (2024) 15 pp. 8925-8925 [ Pubmed: 39414793 DOI: doi:10.1038/s41467-024-53309-y ]
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 23s rrna (885 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- E. coli 70s ribosome in complex with pramp rumicidin-2 (Complex from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- (2s)-2-amino-4-(methylsulfanyl)butane-1-thiol (151 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l9 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Rumicidin-2 (12-27) (2 kDa, Protein from Beatragus hunteri)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
Translating 80S rabbit ribosome stalled by emetine with eEF2
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8vft
Q-score: 0.493
To Be Published
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- El36 (12 kDa, Protein from Oryctolagus cuniculus)
- Us3 (26 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- El15 (24 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- El6 (33 kDa, Protein from Oryctolagus cuniculus)
- Emetine (480 Da, Ligand)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El37 (11 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- El27 (15 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- El34 (13 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- El40 (10 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Mrna (1 kDa, RNA from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- Rabbit ribosome stalled by emetine with eef2 (4 MDa, Complex from Oryctolagus cuniculus)
- Es10 (18 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- E-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- Eef2 (95 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Ul11 (17 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
YphC-treated 45SYphC particle. Class 5
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9bs0
Q-score: 0.39
Arpin D, Palacios A, Basu K, Ortega J
Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkae1197 Pubmed: 39658043 ]
- Large ribosomal subunit protein bl17 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Gtpase der (48 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 23s rrna (949 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl27 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl33a (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s assembly intermediate 45syphc class 1 (Complex from Bacillus subtilis)
- 5s rrna (38 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul1 (25 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
45SRbgA particle in complex with RbgA and YphC. Class A
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9bsl
Q-score: 0.414
Arpin D, Palacios A, Basu K, Ortega J
Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkae1197 Pubmed: 39658043 ]
- Large ribosomal subunit protein bl17 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 23s rrna (949 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Ribosome biogenesis gtpase a (32 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Gtpase der (48 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s assembly intermediate 45syphc class 1 (Complex from Bacillus subtilis)
- Large ribosomal subunit protein ul1 (25 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
45SRbgA particle in complex with RbgA and YphC. Class B
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9bss
Q-score: 0.456
Arpin D, Palacios A, Basu K, Ortega J
Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkae1197 Pubmed: 39658043 ]
- Large ribosomal subunit protein bl17 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 23s rrna (949 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Ribosome biogenesis gtpase a (32 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Gtpase der (48 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl27 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s assembly intermediate 45syphc class 1 (Complex from Bacillus subtilis)
- 5s rrna (38 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul1 (25 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 9c3h
Q-score: 0.684
Zhu X, Cruz VE, Zhang H, Erzberger JP, Mendell JT
Science (2024) 386 pp. eadq8587-eadq8587 [ Pubmed: 39571015 DOI: doi:10.1126/science.adq8587 ]
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein el29 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5 (31 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es12 (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el20 (20 kDa, Protein from Homo sapiens)
- Mrna (2 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein el24 (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el32 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es1 (30 kDa, Protein from Homo sapiens)
- Nascent chain (3 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24 (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el37 (11 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el18 (21 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el14 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el43 (10 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el31 (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el15 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el21 (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el6 (32 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el13 (24 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ul16 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Homo sapiens)
- 2-[3-(2-hydroxy-1,1-dihydroxymethyl-ethylamino)-propylamino]-2-hydroxymethyl-propane-1,3-diol (282 Da, Ligand)
- Large ribosomal subunit protein el38 (8 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el36 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el19 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- 80s ribosome in complex with cnot3 and p-site trna arg ccg-1 (4 MDa, Complex from Homo sapiens)
- Large ribosomal subunit protein ul14 (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el33 (12 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ul2 (28 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Ccr4-not transcription complex subunit 3 (64 kDa, Protein from Homo sapiens)
- Fau ubiquitin-like and ribosomal protein s30 (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el28 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el30 (12 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- Trna-arg,ccg-1 (24 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ul4 (47 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Large ribosomal subunit protein ul18 (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30 (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul23 (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el22 (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es17 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3 (46 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el40 (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el27 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el8 (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el34 (13 kDa, Protein from Homo sapiens)
- Isoform 3 of small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es32 (3 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
Resolution: 1.95 Å
EM Method: Single-particle
Fitted PDBs: 9e6q
Q-score: 0.726
Nissley AJ, Shulgina Y, Kivimae RW, Downing BE, Penev PI, Banfield JF, Nayak DD, Cate JHD
To Be Published
- Large ribosomal subunit protein ul3 (37 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el24 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el20 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el31 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Parep1 domain containing protein (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el34 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el43 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- El14 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el30 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 5s rrna (41 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul18 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el21 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Water (18 Da, Ligand)
- Putative signal-transduction protein with cbs domains (72 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul4 (31 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul23 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul13 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el32 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- El42 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 23s rrna (984 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul2 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el37 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el8 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el13 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul14 (15 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Spermine (202 Da, Ligand)
- Large ribosomal subunit protein el18 (13 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el40 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s ribosomal protein l15e (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul16 (19 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Lsu ribosomal protein l38e (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul29 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Dj-1/pfpi domain-containing protein (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s ribosomal subunit (Complex from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul30 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome (Composite Map)
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 9e71
Q-score: 0.614
Nissley AJ, Shulgina Y, Kivimae RW, Downing BE, Penev PI, Banfield JF, Nayak DD, Cate JHD
To Be Published
- Small ribosomal subunit protein es24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es1 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul3 (37 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s30e (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el24 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el20 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el31 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Parep1 domain containing protein (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us2 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us3 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us7 (25 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el34 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el43 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us5 (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el30 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us19 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Es28 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 5s rrna (41 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul18 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us17 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el21 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Water (18 Da, Ligand)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul4 (31 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s25e (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul23 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es17 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul13 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el32 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- El42 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es4 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el14 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 23s rrna (984 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- 70s ribosome (Complex from Pyrobaculum calidifontis JCM 11548)
- 16s rrna (487 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us12 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us13 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul2 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el37 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small zinc finger protein hvo-2753-like zinc-binding pocket domain-containing protein (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el8 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el13 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul14 (15 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es27 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Spermine (202 Da, Ligand)
- Small ribosomal subunit protein us4 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el18 (13 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el40 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Magnesium ion (24 Da, Ligand)
- Ssu ribosomal protein s26e (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s ribosomal protein l15e (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul16 (19 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Lsu ribosomal protein l38e (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul29 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es6 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- As35 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Dj-1/pfpi domain-containing protein (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us10 (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 30s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul30 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome in complex with Dri (Composite Map)
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 9e7f
Q-score: 0.603
Nissley AJ, Shulgina Y, Kivimae RW, Downing BE, Penev PI, Banfield JF, Nayak DD, Cate JHD
To Be Published
- Small ribosomal subunit protein es24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es1 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul3 (37 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es28 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s30e (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el24 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el20 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el31 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Parep1 domain containing protein (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us2 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us3 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us7 (25 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el34 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el43 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us5 (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el30 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us19 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 5s rrna (41 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul18 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us17 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el21 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Water (18 Da, Ligand)
- Putative signal-transduction protein with cbs domains (72 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul4 (31 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s25e (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul23 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es17 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul13 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el32 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- El42 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es4 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el14 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 23s rrna (984 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- 70s ribosome (Complex from Pyrobaculum calidifontis JCM 11548)
- 16s rrna (487 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us12 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us13 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul2 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el37 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small zinc finger protein hvo-2753-like zinc-binding pocket domain-containing protein (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el8 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el13 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul14 (15 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es27 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Spermine (202 Da, Ligand)
- Small ribosomal subunit protein us4 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el18 (13 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el40 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Magnesium ion (24 Da, Ligand)
- Ssu ribosomal protein s26e (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s ribosomal protein l15e (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul16 (19 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Lsu ribosomal protein l38e (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul29 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es6 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- As35 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Dj-1/pfpi domain-containing protein (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us10 (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 30s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul30 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Non-translating S. pombe ribosome
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9axt
Q-score: 0.471
Gemin O, Gluc M, Rosa H, Purdy M, Niemann M, Peskova Y, Mattei S, Jomaa A
Nat Commun (2024) 15 pp. 8666-8666 [ DOI: doi:10.1038/s41467-024-52911-4 Pubmed: 39379376 ]
- Small ribosomal subunit protein es12a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el27a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es24a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul23a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es25a (9 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el29 (7 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es1b (28 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es26b (13 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el34b (12 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el43a (10 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us7a (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el37b (10 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us11b (14 kDa, Protein from Schizosaccharomyces pombe)
- Non-translating s. pombe ribosome (3 MDa, Complex from Schizosaccharomyces pombe 972h-)
- Large ribosomal subunit protein el8 (28 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us4b (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul2c (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el22 (13 kDa, Protein from Schizosaccharomyces pombe)
- 28s ribosomal rna (1 MDa, RNA from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us9a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el33a (12 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es8b (22 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el31 (13 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el38a (8 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us15 (16 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us19b (17 kDa, Protein from Schizosaccharomyces pombe)
- 18s ribosomal rna (593 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el14 (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el19b (22 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es19a (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul14b (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul30c (28 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el36b (11 kDa, Protein from Schizosaccharomyces pombe)
- 5.8s ribosomal rna (52 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul13a (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul5a (19 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el15b (23 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul6b (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el21b (18 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us2a (31 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es17a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us17a (17 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el28 (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es6b (27 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us8a (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el24b (16 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es7 (21 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us13b (17 kDa, Protein from Schizosaccharomyces pombe)
- 5s ribosomal rna (78 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el20a (20 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es28a (7 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es4c (29 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us12a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el30a (11 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el13 (23 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul4a (39 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es30b (6 kDa, Protein from Schizosaccharomyces pombe)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein el6 (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul3a (43 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul18b (33 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul16a (25 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul22a (20 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul15b (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el18b (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el32a (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es10b (16 kDa, Protein from Schizosaccharomyces pombe)