State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8xu8
Q-score: 0.414
Cheng J, Wu CL, Li JX, Yang Q, Zhao MJ, Zhang XZ
To Be Published
- Large ribosomal subunit protein el22a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us2a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us11b (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- 18s rrna (579 kDa, RNA from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul14a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el24a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us15 (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- 5s rrna (38 kDa, RNA from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el33a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul29a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es7a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul15 (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el19a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us3 (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us13a (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul4a (39 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es4a (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us14a (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul2a (27 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es1a (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- Elongation factor 2 (93 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul3 (43 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es19a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es27a (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- Trna (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Yeast 80s ribosome with compact eef2 and trnas (Complex from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us8a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el34a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el42a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el37a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el18a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el29 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es10a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us19 (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el38 (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul24a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us17a (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul6a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us9a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul18 (33 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul16 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el6b (19 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el43a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us5 (23 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el13a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein rack1 (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es24a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul30a (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el8a (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el14a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us4a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el41a (3 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es31 (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el15a (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es12 (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el30 (10 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el21a (18 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el32 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul13a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es30a (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es25a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es28a (7 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el31a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul22a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es26a (10 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el36a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el27a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us12a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul5b (19 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul23 (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es21a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el20a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el40a (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es6a (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es8a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es17a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7obr
Q-score: 0.492
Jomaa A, Eitzinger S, Zhu Z, Chandrasekar S, Kobayashi K, Shan SO, Ban N
Cell Rep (2021) 36 pp. 109350-109350 [ Pubmed: 34260909 DOI: doi:10.1016/j.celrep.2021.109350 ]
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 14 kda protein (12 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- Srp rna (80 kDa, RNA from Canis lupus familiaris)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 19 (16 kDa, Protein from Canis lupus familiaris)
- Rnc-srp complex (Complex)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- Dipeptidyl aminopeptidase b (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 54 kda protein (55 kDa, Protein from Canis lupus familiaris)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 9 kda protein (10 kDa, Protein from Canis lupus familiaris)
- Polypeptide nascent chain (Complex from Saccharomyces cerevisiae)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle subunit srp68 (70 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle subunit srp72 (74 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Rnc-srp complex (Complex from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El32 (18 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- Rnc-srp complex (Complex from Canis lupus familiaris)