Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7obr
Q-score: 0.492
Jomaa A, Eitzinger S, Zhu Z, Chandrasekar S, Kobayashi K, Shan SO, Ban N
Cell Rep (2021) 36 pp. 109350-109350 [ Pubmed: 34260909 DOI: doi:10.1016/j.celrep.2021.109350 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Signal recognition particle subunit srp68 (70 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 19 (16 kDa, Protein from Canis lupus familiaris)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- Srp rna (80 kDa, RNA from Canis lupus familiaris)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 14 kda protein (12 kDa, Protein from Canis lupus familiaris)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- Dipeptidyl aminopeptidase b (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Polypeptide nascent chain (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- El32 (18 kDa, Protein from Oryctolagus cuniculus)
- Rnc-srp complex (Complex from Canis lupus familiaris)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 54 kda protein (55 kDa, Protein from Canis lupus familiaris)
- Rnc-srp complex (Complex)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 9 kda protein (10 kDa, Protein from Canis lupus familiaris)
- Signal recognition particle subunit srp72 (74 kDa, Protein from Canis lupus familiaris)
- Rnc-srp complex (Complex from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6frk
Q-score: 0.363
Kobayashi K, Jomaa A, Lee JH, Chandrasekar S, Boehringer D, Shan SO, Ban N
Science (2018) 360 pp. 323-327 [ DOI: doi:10.1126/science.aar7924 Pubmed: 29567807 ]
- Signal recognition particle 54 kda protein (55 kDa, Protein from Dog)
- Ribosomal protein ul22 (17 kDa, Protein from Rabbit)
- Ribosomal protein el32 (15 kDa, Protein from Rabbit)
- Ribosomal protein ul4 (41 kDa, Protein from Rabbit)
- Signal recognition particle subunit srp68 (65 kDa, Protein from Dog)
- Translating ribosome bound to srp and srp receptor (Complex)
- Ribosomal protein l8 (26 kDa, Protein from Rabbit)
- Ribosomal protein l23 (13 kDa, Protein from Rabbit)
- Ribosomal protein el6 (27 kDa, Protein from Rabbit)
- Signal recognition particle subunit srp19 (12 kDa, Protein from Dog)
- Signal recognition particle 9 kda protein (8 kDa, Protein from Dog)
- Ribosomal protein el28 (14 kDa, Protein from Rabbit)
- Ribosomal protein el18 (21 kDa, Protein from Rabbit)
- Ribosomal protein ul23 (13 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein ul6 (21 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein el30 (10 kDa, Protein from Rabbit)
- Signal sequence (Complex from Saccharomyces cerevisiae)
- Ribosomal protein el8 (27 kDa, Protein from Rabbit)
- Srp receptor alpha subunit (72 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Trna (24 kDa, RNA from Rabbit)
- Canis lupus familiaris rna, 7sl, cytoplasmic 1 (rn7sl1), srp rna (96 kDa, RNA from Canis lupus familiaris)
- Ribosomal protein ul18 (33 kDa, Protein from Rabbit)
- Srp receptor (Complex from Oryctolagus cuniculus)
- Ribosomal protein el22 (11 kDa, Protein from Rabbit)
- Ribosomal protein el41 (3 kDa, Protein from Rabbit)
- Ribosomal protein el42 (12 kDa, Protein from Rabbit)
- Ribosomal protein el20 (20 kDa, Protein from Rabbit)
- 60s acidic ribosomal protein p0 (22 kDa, Protein from Rabbit)
- Signal recognition particle subunit srp72,signal recognition particle subunit srp72,signal recognition particle subunit srp72 (67 kDa, Protein from Dog)
- Srp receptor beta subunit (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (17 kDa, Protein from Rabbit)
- Ribosomal protein el39 (6 kDa, Protein from Rabbit)
- Ribosomal protein ul3 (44 kDa, Protein from Rabbit)
- Ribosomal protein ul5 (19 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Rabbit)
- Ribosomal protein el13 (24 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Ribosomal protein el14 (16 kDa, Protein from Rabbit)
- Ribosomal protein el19 (21 kDa, Protein from Rabbit)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Signal recognition particle 14 kda protein (12 kDa, Protein from Dog)
- Srp (Complex from Canis lupus familiaris)
- 5.8s ribosomal rna (50 kDa, RNA from Rabbit)
- Ribosomal protein el36 (11 kDa, Protein from Rabbit)
- Ribosomal protein ul15 (16 kDa, Protein from Rabbit)
- Signal sequence (1 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal protein ul24 (15 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Rabbit)
- Ribosomal protein l37 (10 kDa, Protein from Rabbit)
- Ribosomal protein ul13 (23 kDa, Protein from Rabbit)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosomal protein el34 (12 kDa, Protein from Rabbit)
- Ribosomal protein ul29 (14 kDa, Protein from Rabbit)
- Ribosomal protein el40 (6 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein el24 (7 kDa, Protein from Rabbit)
- Ribosomal protein el33 (12 kDa, Protein from Rabbit)
- 60s ribosomal protein l29 (8 kDa, Protein from Rabbit)
- Ribosomal protein el21 (18 kDa, Protein from Rabbit)
- Ribosomal protein el31 (12 kDa, Protein from Rabbit)
- Ribosomal protein ul16 (24 kDa, Protein from Rabbit)
- Ribosomal protein el38 (8 kDa, Protein from Rabbit)
- Ribosomal protein ul30 (26 kDa, Protein from Rabbit)
- Ribosomal protein el43 (10 kDa, Protein from Rabbit)