mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 8g60
Q-score: 0.576
Holm M, Natchiar SK, Rundlet EJ, Myasnikov AG, Watson ZL, Altman RB, Wang HY, Taunton J, Blanchard SC
Nature (2023) 617 pp. 200-207 [ Pubmed: 37020024 DOI: doi:10.1038/s41586-023-05908-w ]
- Es7 (22 kDa, Protein from Homo sapiens)
- Es25 (13 kDa, Protein from Homo sapiens)
- Rack1 (35 kDa, Protein from Homo sapiens)
- Es4 (29 kDa, Protein from Homo sapiens)
- El8 (30 kDa, Protein from Homo sapiens)
- El40 (14 kDa, Protein from Homo sapiens)
- El32 (15 kDa, Protein from Homo sapiens)
- Us3 (26 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- El30 (12 kDa, Protein from Homo sapiens)
- Es26 (13 kDa, Protein from Homo sapiens)
- Es24 (15 kDa, Protein from Homo sapiens)
- Us19 (17 kDa, Protein from Homo sapiens)
- Methionine (149 Da, Ligand)
- El34 (13 kDa, Protein from Homo sapiens)
- El24 (17 kDa, Protein from Homo sapiens)
- Us10 (13 kDa, Protein from Homo sapiens)
- Ul6 (21 kDa, Protein from Homo sapiens)
- El33 (12 kDa, Protein from Homo sapiens)
- El18 (21 kDa, Protein from Homo sapiens)
- Es19 (16 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- El14 (23 kDa, Protein from Homo sapiens)
- Ul29 (14 kDa, Protein from Homo sapiens)
- Spermidine (145 Da, Ligand)
- Es6 (28 kDa, Protein from Homo sapiens)
- Ul13 (23 kDa, Protein from Homo sapiens)
- El20 (20 kDa, Protein from Homo sapiens)
- Us7 (22 kDa, Protein from Homo sapiens)
- El15 (24 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Us9 (16 kDa, Protein from Homo sapiens)
- Us5 (31 kDa, Protein from Homo sapiens)
- Ul5 (20 kDa, Protein from Homo sapiens)
- Es8 (24 kDa, Protein from Homo sapiens)
- Us12 (15 kDa, Protein from Homo sapiens)
- Eef1a (50 kDa, Protein from Homo sapiens)
- Us8 (14 kDa, Protein from Homo sapiens)
- Ul15 (16 kDa, Protein from Homo sapiens)
- Us11 (16 kDa, Protein from Homo sapiens)
- Es27 (9 kDa, Protein from Homo sapiens)
- 1,4-diaminobutane (88 Da, Ligand)
- Ul11 (17 kDa, Protein from Homo sapiens)
- El38 (8 kDa, Protein from Homo sapiens)
- El41 (3 kDa, Protein from Homo sapiens)
- 4-{(2r,5s,6e)-2-hydroxy-5-methyl-7-[(2r,3s,4e,6z,10e)-3-methyl-12-oxooxacyclododeca-4,6,10-trien-2-yl]-4-oxooct-6-en-1-yl}piperidine-2,6-dione (457 Da, Ligand)
- P-site trna (24 kDa, RNA from Homo sapiens)
- Es28 (7 kDa, Protein from Homo sapiens)
- A-site trna (24 kDa, RNA from Homo sapiens)
- Es21 (9 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- El22 (14 kDa, Protein from Homo sapiens)
- Ul23 (17 kDa, Protein from Homo sapiens)
- El19 (23 kDa, Protein from Homo sapiens)
- Phenylalanine (165 Da, Ligand)
- El6 (32 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
- El28 (15 kDa, Protein from Homo sapiens)
- El27 (15 kDa, Protein from Homo sapiens)
- Ul3 (46 kDa, Protein from Homo sapiens)
- Human ribosome (Complex from Homo sapiens)
- El31 (14 kDa, Protein from Homo sapiens)
- El42 (12 kDa, Protein from Homo sapiens)
- El39 (6 kDa, Protein from Homo sapiens)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Ul14 (14 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- El37 (11 kDa, Protein from Homo sapiens)
- Ul22 (21 kDa, Protein from Homo sapiens)
- Plitidepsin (1 kDa, Ligand)
- Ul1 (24 kDa, Protein from Homo sapiens)
- Mrna (19 kDa, RNA from Homo sapiens)
- El43 (10 kDa, Protein from Homo sapiens)
- El13 (31 kDa, Protein from Homo sapiens)
- Ul18 (34 kDa, Protein from Homo sapiens)
- Us2 (32 kDa, Protein from Homo sapiens)
- El36 (12 kDa, Protein from Homo sapiens)
- Ul16 (24 kDa, Protein from Homo sapiens)
- Us14 (6 kDa, Protein from Homo sapiens)
- Es30 (14 kDa, Protein from Homo sapiens)
- Es31 (18 kDa, Protein from Homo sapiens)
- Es17 (15 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Es10 (18 kDa, Protein from Homo sapiens)
- Us15 (17 kDa, Protein from Homo sapiens)
- Ul4 (47 kDa, Protein from Homo sapiens)
- Es1 (30 kDa, Protein from Homo sapiens)
- Ul10 (34 kDa, Protein from Homo sapiens)
- Ul30 (29 kDa, Protein from Homo sapiens)
- El21 (18 kDa, Protein from Homo sapiens)
- Ul2 (28 kDa, Protein from Homo sapiens)
- Us4 (22 kDa, Protein from Homo sapiens)
- Anisomycin (265 Da, Ligand)
- Us17 (18 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Us13 (17 kDa, Protein from Homo sapiens)
- Ul24 (17 kDa, Protein from Homo sapiens)
- El29 (17 kDa, Protein from Homo sapiens)
- Es12 (14 kDa, Protein from Homo sapiens)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6gz4
Q-score: 0.386
Flis J, Holm M, Rundlet EJ, Loerke J, Hilal T, Dabrowski M, Burger J, Mielke T, Blanchard SC, Spahn CMT, Budkevich TV
Cell Rep (2018) 25 pp. 2676-2688.e7 [ Pubmed: 30517857 DOI: doi:10.1016/j.celrep.2018.11.040 ]
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us2 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el40 (5 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es4 (28 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el6 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul10 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul30 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- Ap/p-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el31 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el34 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us19 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul14 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es1 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el15 (24 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us3 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el30 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el28 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es12 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us4 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic elongation factor 2 (eef2) (95 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es17 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul5 (19 kDa, Protein from Oryctolagus cuniculus)
- Pe/e-site-trna (24 kDa, RNA from Oryctolagus cuniculus)
- 18s ribosomal rna (551 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein es21 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us10 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (24 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul24 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el14 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es7 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el29 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es6 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el37 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul13 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es27 (9 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ti-post-2 (4 MDa, Complex from Oryctolagus cuniculus)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein us17 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack 1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul2 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el27 (15 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein es30 (6 kDa, Protein from Oryctolagus cuniculus)
- Mrna (3 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein el22 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el41 (3 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6gz5
Q-score: 0.38
Flis J, Holm M, Rundlet EJ, Loerke J, Hilal T, Dabrowski M, Burger J, Mielke T, Blanchard SC, Spahn CMT, Budkevich TV
Cell Rep (2018) 25 pp. 2676-2688.e7 [ Pubmed: 30517857 DOI: doi:10.1016/j.celrep.2018.11.040 ]
- Ribosomal protein us9 (15 kDa, Protein from rabbit)
- Ribosomal protein us15 (17 kDa, Protein from rabbit)
- Ribosomal protein ul29 (14 kDa, Protein from rabbit)
- Ribosomal protein ul3 (45 kDa, Protein from rabbit)
- Ribosomal protein ul1 (24 kDa, Protein from rabbit)
- Ribosomal protein el14 (16 kDa, Protein from rabbit)
- Ribosomal protein el15 (24 kDa, Protein from rabbit)
- Ribosomal protein el36 (11 kDa, Protein from rabbit)
- Ribosomal protein es8 (24 kDa, Protein from rabbit)
- Ribosomal protein es27 (9 kDa, Protein from rabbit)
- Ribosomal protein el27 (15 kDa, Protein from rabbit)
- 18s ribosomal rna (551 kDa, RNA from rabbit)
- Ribosomal protein el29 (7 kDa, Protein from rabbit)
- Ribosomal protein el28 (13 kDa, Protein from rabbit)
- Ribosomal protein us3 (24 kDa, Protein from rabbit)
- P/p-site-trna (24 kDa, RNA from rabbit)
- Ribosomal protein us5 (24 kDa, Protein from rabbit)
- Ribosomal protein es17 (14 kDa, Protein from rabbit)
- Ribosomal protein el33 (12 kDa, Protein from rabbit)
- Ribosomal protein el21 (18 kDa, Protein from rabbit)
- Ribosomal protein es26 (11 kDa, Protein from rabbit)
- Ribosomal protein ul4 (41 kDa, Protein from rabbit)
- Ribosomal protein el34 (12 kDa, Protein from rabbit)
- Eukaryotic elongation factor 2 (eef2) (95 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (4 MDa, Complex)
- Ribosomal protein us10 (11 kDa, Protein from rabbit)
- Ribosomal protein ul13 (22 kDa, Protein from rabbit)
- Ribosomal protein el40 (5 kDa, Protein from rabbit)
- Ribosomal protein es21 (8 kDa, Protein from rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us11 (14 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (Complex from Saccharomyces cerevisiae)
- Ribosomal protein ul2 (27 kDa, Protein from rabbit)
- 28s ribosomal rna (1 MDa, RNA from rabbit)
- Ribosomal protein es25 (9 kDa, Protein from rabbit)
- Ribosomal protein el31 (12 kDa, Protein from rabbit)
- Ribosomal protein us8 (14 kDa, Protein from rabbit)
- Ribosomal protein ul30 (27 kDa, Protein from rabbit)
- Ribosomal protein el19 (21 kDa, Protein from rabbit)
- Ribosomal protein el13 (23 kDa, Protein from rabbit)
- Ribosomal protein el37 (9 kDa, Protein from rabbit)
- Ribosomal protein el6 (22 kDa, Protein from rabbit)
- Ribosomal protein us12 (15 kDa, Protein from rabbit)
- Ribosomal protein el32 (15 kDa, Protein from rabbit)
- Ribosomal protein el43 (10 kDa, Protein from rabbit)
- Ribosomal protein el30 (11 kDa, Protein from rabbit)
- Ribosomal protein us2 (24 kDa, Protein from rabbit)
- Ribosomal protein ul6 (21 kDa, Protein from rabbit)
- Ribosomal protein el24 (14 kDa, Protein from rabbit)
- 5s ribosomal rna (38 kDa, RNA from rabbit)
- Ribosomal protein es4 (28 kDa, Protein from rabbit)
- Ribosomal protein us13 (16 kDa, Protein from rabbit)
- Ribosomal protein ul11 (16 kDa, Protein from rabbit)
- Ribosomal protein us17 (17 kDa, Protein from rabbit)
- Ribosomal protein ul10 (22 kDa, Protein from rabbit)
- Ribosomal protein es10 (11 kDa, Protein from rabbit)
- Ribosomal protein us7 (21 kDa, Protein from rabbit)
- E/e-site-trna (24 kDa, RNA from baker's yeast)
- Translocation intermediate ti-post-3 (Complex from Enterobacteria phage SP6)
- Ribosomal protein el18 (21 kDa, Protein from rabbit)
- Ribosomal protein es24 (14 kDa, Protein from rabbit)
- Ribosomal protein es30 (6 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (Complex from Oryctolagus cuniculus)
- Ribosomal protein ul16 (24 kDa, Protein from rabbit)
- Mrna (3 kDa, RNA from Enterobacteria phage SP6)
- Ribosomal protein ul24 (15 kDa, Protein from rabbit)
- Ribosomal protein ul22 (17 kDa, Protein from rabbit)
- Ribosomal protein es12 (13 kDa, Protein from rabbit)
- Ribosomal protein ul5 (19 kDa, Protein from rabbit)
- Ribosomal protein ul18 (34 kDa, Protein from rabbit)
- Ribosomal protein us4 (21 kDa, Protein from rabbit)
- Ribosomal protein ul15 (16 kDa, Protein from rabbit)
- Ribosomal protein es6 (26 kDa, Protein from rabbit)
- Ribosomal protein ul14 (13 kDa, Protein from rabbit)
- Ribosomal protein rack 1 (34 kDa, Protein from rabbit)
- Ribosomal protein el8 (26 kDa, Protein from rabbit)
- Ribosomal protein el22 (11 kDa, Protein from rabbit)
- Ribosomal protein us19 (14 kDa, Protein from rabbit)
- Ribosomal protein es19 (15 kDa, Protein from rabbit)
- Ribosomal protein el41 (3 kDa, Protein from rabbit)
- Ribosomal protein es7 (20 kDa, Protein from rabbit)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein el39 (6 kDa, Protein from rabbit)
- Ribosomal protein es1 (24 kDa, Protein from rabbit)
- Ribosomal protein es28 (7 kDa, Protein from rabbit)
- Ribosomal protein ul23 (13 kDa, Protein from rabbit)
- Ribosomal protein us14 (6 kDa, Protein from Enterobacteria phage SP6)
- Ribosomal protein el20 (20 kDa, Protein from rabbit)
- Ribosomal protein el42 (12 kDa, Protein from rabbit)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein es31 (8 kDa, Protein from rabbit)
- Ribosomal protein el38 (8 kDa, Protein from rabbit)