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sample_name:"uL5" AND resolution:[2 TO 3} AND software_ft:"CRYOSPARC" AND xref_links:"chembl"
Damaged 70S ribosome with PrfH bound
Release date: Feb. 5, 2025
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 9mor
Q-score: 0.367
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 9mor
Q-score: 0.367
Tian Y, Li Q, Fatma S, Jiang J, Jin H, Zeng F, Huang RH
bioRxiv (2025) [ Pubmed: 39829893 DOI: doi:10.1101/2025.01.09.632186 ]
Sample:
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl17 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
- Peptide chain release factor h (26 kDa, Protein from Capnocytophaga gingivalis)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
- 50s (Complex)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Escherichia coli)
- Damaged 70s with prfh (Complex from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- Trna (Cellular component)
- P-trna, e-trna (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- Mrna (8 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli)
- 30s (Complex)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- Putative peptide chain release factor homolog (Cellular component)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
Damaged 70S ribosome with PrfH bound
Release date: Feb. 5, 2025
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 9mq4
Q-score: 0.462
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 9mq4
Q-score: 0.462
Tian Y, Li Q, Fatma S, Jiang J, Jin H, Zeng F, Huang RH
bioRxiv (2025) [ Pubmed: 39829893 DOI: doi:10.1101/2025.01.09.632186 ]
Sample:
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl17 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
- 50s (Complex)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- Peptide chain release factor h (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli 0.1197)
- Damaged 70s with prfh (Complex from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- Trna (Cellular component)
- P-trna, e-trna (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- Mrna (8 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- 30s (Complex)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- Putative peptide chain release factor homolog (Cellular component)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome (Composite Map)
Release date: Nov. 20, 2024
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 9e71
Q-score: 0.614
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 9e71
Q-score: 0.614
Nissley AJ, Shulgina Y, Kivimae RW, Downing BE, Penev PI, Banfield JF, Nayak DD, Cate JHD
To Be Published
Sample:
- Small ribosomal subunit protein es1 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us19 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s25e (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es27 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small zinc finger protein hvo-2753-like zinc-binding pocket domain-containing protein (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el13 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us10 (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el8 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el20 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el30 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es17 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el40 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Es28 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 23s rrna (984 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- 70s ribosome (Complex from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es4 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul29 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el32 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el34 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul14 (15 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Parep1 domain containing protein (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el31 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul4 (31 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Dj-1/pfpi domain-containing protein (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us4 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us12 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Spermine (202 Da, Ligand)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 30s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
- As35 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s ribosomal protein l15e (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us7 (25 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- El42 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul2 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us13 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Water (18 Da, Ligand)
- Large ribosomal subunit protein el14 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul30 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 5s rrna (41 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul16 (19 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us17 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul13 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el37 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s26e (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s30e (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el21 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us5 (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el24 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es6 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul3 (37 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul18 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el43 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us3 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us2 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el18 (13 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 16s rrna (487 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul23 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Lsu ribosomal protein l38e (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome in complex with Dri (Composite Map)
Release date: Nov. 20, 2024
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 9e7f
Q-score: 0.603
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 9e7f
Q-score: 0.603
Nissley AJ, Shulgina Y, Kivimae RW, Downing BE, Penev PI, Banfield JF, Nayak DD, Cate JHD
To Be Published
Sample:
- Small ribosomal subunit protein es1 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us19 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s25e (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es27 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small zinc finger protein hvo-2753-like zinc-binding pocket domain-containing protein (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el13 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us10 (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el8 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el20 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el30 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es17 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el40 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Putative signal-transduction protein with cbs domains (72 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 23s rrna (984 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- 70s ribosome (Complex from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es4 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul29 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el32 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el34 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul14 (15 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Parep1 domain containing protein (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el31 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul4 (31 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Dj-1/pfpi domain-containing protein (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us4 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us12 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Spermine (202 Da, Ligand)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 30s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
- As35 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s ribosomal protein l15e (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us7 (25 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- El42 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul2 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us13 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Water (18 Da, Ligand)
- Large ribosomal subunit protein el14 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul30 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 5s rrna (41 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul16 (19 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us17 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul13 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el37 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s26e (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s30e (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el21 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us5 (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el24 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es6 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul3 (37 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul18 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el43 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us3 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us2 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es28 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el18 (13 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 16s rrna (487 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul23 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Lsu ribosomal protein l38e (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
E167K RF2 on E. coli 70S release complex with UAA
Release date: Sept. 25, 2024
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8qk7
Q-score: 0.568
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8qk7
Q-score: 0.568
Pundir S, Larsson DSD, Selmer M, Sanyal S
To Be Published
Sample:
- Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- Peptide chain release factor rf2 (41 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 1,4-diaminobutane (88 Da, Ligand)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
- Mrna (15 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- Spermine (202 Da, Ligand)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- Ribosome release complex (2 MDa, Complex from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
- Spermidine (145 Da, Ligand)
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- Trna(fmet) (24 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul11 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
High-resolution C. elegans 80S ribosome structure - class 1
Release date: Sept. 11, 2024
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9cai
Q-score: 0.575
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9cai
Q-score: 0.575
Sehgal E, Wohlenberg C, Soukup EM, Viscardi MJ, Serrao VHB, Arribere JA
RNA (2024) 30 pp. 1513-1528 [ Pubmed: 39209556 DOI: doi:10.1261/rna.080103.124 ]
Sample:
- Small ribosomal subunit protein us5 (29 kDa, Protein from Caenorhabditis elegans)
- 28s rrna (1 MDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us2 (30 kDa, Protein from Caenorhabditis elegans)
- Trna (24 kDa, RNA from Caenorhabditis elegans)
- 5.8s rrna (49 kDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein es8 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul30 (28 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el18 (21 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul23b (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el33 (13 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el15 (24 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul15 (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul16 (24 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el6 (24 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Caenorhabditis elegans)
- Ribosomal protein l37 (10 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el20 (21 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el27 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el31 (14 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-ribosomal protein el40 fusion protein (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us17 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul14 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us7 (23 kDa, Protein from Caenorhabditis elegans)
- Spermidine (145 Da, Ligand)
- Small ribosomal subunit protein es12 (15 kDa, Protein from Caenorhabditis elegans)
- Caenorhabditis elegans 80s ribosome (Complex from Caenorhabditis elegans)
- Large ribosomal subunit protein el19 (23 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul13 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el43 (10 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-like domain-containing protein (14 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el38 (8 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el22 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el14 (15 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul2 (28 kDa, Protein from Caenorhabditis elegans)
- 18s rrna (565 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein el13 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul5b (22 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Caenorhabditis elegans)
- 60s ribosomal protein l29 (7 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el34 (12 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Caenorhabditis elegans)
- Ribosomal protein, small subunit (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Caenorhabditis elegans)
- 5s rrna (38 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el8 (30 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el36 (11 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es17 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Caenorhabditis elegans)
- Mrna (3 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein el21 (18 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el30 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul18 (33 kDa, Protein from Caenorhabditis elegans)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- Large ribosomal subunit protein ul3 (45 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es25 (12 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es1 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul4 (38 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es24 (14 kDa, Protein from Caenorhabditis elegans)
- El41 (3 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es4 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul24 (16 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-like protein 1-ribosomal protein es31 fusion protein (18 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el32 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Caenorhabditis elegans)
- Plectin/s10 n-terminal domain-containing protein (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el24 (17 kDa, Protein from Caenorhabditis elegans)
High resolution C. elegans 80S ribosome structure
Release date: Sept. 4, 2024
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 9bh5
Q-score: 0.517
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 9bh5
Q-score: 0.517
Sehgal E, Wohlenberg C, Soukup EM, Viscardi MJ, Serrao VHB, Arribere JA
RNA (2024) 30 pp. 1513-1528 [ Pubmed: 39209556 DOI: doi:10.1261/rna.080103.124 ]
Sample:
- Small ribosomal subunit protein us5 (29 kDa, Protein from Caenorhabditis elegans)
- 28s rrna (1 MDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us2 (30 kDa, Protein from Caenorhabditis elegans)
- Trna (24 kDa, RNA from Caenorhabditis elegans)
- 5.8s rrna (49 kDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein es8 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul30 (28 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el18 (21 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul23b (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el33 (13 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el15 (24 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul15 (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul16 (24 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el6 (24 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Caenorhabditis elegans)
- Ribosomal protein l37 (10 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el20 (21 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el27 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el31 (14 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-ribosomal protein el40 fusion protein (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us17 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul14 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us7 (23 kDa, Protein from Caenorhabditis elegans)
- Spermidine (145 Da, Ligand)
- Small ribosomal subunit protein es12 (15 kDa, Protein from Caenorhabditis elegans)
- Caenorhabditis elegans 80s ribosome (Complex from Caenorhabditis elegans)
- Large ribosomal subunit protein el19 (23 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul13 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el43 (10 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-like domain-containing protein (14 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el38 (8 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el22 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el14 (15 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul2 (28 kDa, Protein from Caenorhabditis elegans)
- 18s rrna (565 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein el13 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul5b (22 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Caenorhabditis elegans)
- 60s ribosomal protein l29 (7 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el34 (12 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Caenorhabditis elegans)
- Ribosomal protein, small subunit (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Caenorhabditis elegans)
- 5s rrna (38 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el8 (30 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el36 (11 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es17 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Caenorhabditis elegans)
- Mrna (3 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein el21 (18 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el30 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul18 (33 kDa, Protein from Caenorhabditis elegans)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- Large ribosomal subunit protein ul3 (45 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es25 (12 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es1 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul4 (38 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es24 (14 kDa, Protein from Caenorhabditis elegans)
- El41 (3 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es4 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul24 (16 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-like protein 1-ribosomal protein es31 fusion protein (18 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el32 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Caenorhabditis elegans)
- Plectin/s10 n-terminal domain-containing protein (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el24 (17 kDa, Protein from Caenorhabditis elegans)
Release date: Feb. 28, 2024
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8uua
Q-score: 0.583
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8uua
Q-score: 0.583
Nucleic Acids Res (2024) 52 pp. 4053-4066 [ Pubmed: 38407413 DOI: doi:10.1093/nar/gkae128 ]
Sample:
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl27 (10 kDa, Protein from Listeria innocua)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl17 (15 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl36 (4 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl28 (7 kDa, Protein from Listeria innocua)
- Potassium ion (39 Da, Ligand)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul16 (16 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Listeria innocua)
- Listeria innocua 50s ribosomal subunit bound to hflxr (1 MDa, Complex from Listeria innocua)
- Water (18 Da, Ligand)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Listeria innocua)
- Gtpase hflx (47 kDa, Protein from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e))
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul18 (13 kDa, Protein from Listeria innocua)
- Magnesium ion (24 Da, Ligand)
- 23s ribosomal rna (951 kDa, RNA from Listeria innocua)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Listeria innocua)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Listeria innocua)
- 5s ribosomal rna (37 kDa, RNA from Listeria innocua)
- Large ribosomal subunit protein bl31b (9 kDa, Protein from Listeria innocua)