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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"uL5" AND xref_links:"pdb" AND citation_journal_name:"BIORXIV" AND author_name:"R"

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EMD-19076

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Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Release date: Feb. 21, 2024
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8rdv
Q-score: 0.627

Helena-Bueno K, Rybak MY, Ekemezie CL, Sullivan R, Brown CR, Dingwall C, Basle A, Schneider C, Connolly JPR, Blaza JN, Csorgo B, Moynihan PJ, Gagnon MG, Hill CH, Melnikov SV

Nature (2024) 626 pp. 1125-1132 [ Pubmed: 38355796 DOI: doi:10.1038/s41586-024-07041-8 ]

Sample:

Methyl-accepting chemotaxis protein (41 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul14 (13 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl19 (14 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us13 (13 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us5 (18 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us10 (11 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein bs16 (9 kDa, Protein from Psychrobacter urativorans)
Heterogenous trna (23 kDa, RNA from Psychrobacter urativorans)
5s rrna (36 kDa, RNA from Psychrobacter urativorans)
Large ribosomal subunit protein ul15 (15 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us8 (14 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein bs6 (15 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl28 (9 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us3 (27 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein bs21 (8 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl9 (18 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl36 (4 kDa, Protein from Psychrobacter urativorans)
Heterogenous mrna (1 kDa, RNA from Psychrobacter urativorans)
Small ribosomal subunit protein us14 (11 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul6 (19 kDa, Protein from Psychrobacter urativorans)
16s rrna (514 kDa, RNA from Psychrobacter urativorans)
Large ribosomal subunit protein ul18 (12 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl32 (7 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us17 (10 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul23 (12 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl25 (23 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us15 (10 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein bs20 (9 kDa, Protein from Psychrobacter urativorans)
23s rrna (933 kDa, RNA from Psychrobacter urativorans)
Elongation factor tu (43 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us2 (29 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul24 (11 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl31b (10 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl33 (6 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us7 (17 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us9 (14 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein bs18 (8 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us19 (10 kDa, Protein from Psychrobacter urativorans)
Ribosomes isolated from ice-treated cultures of psychrobacter urativorans. (Complex from Psychrobacter urativorans)
Small ribosomal subunit protein us12 (13 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul5 (19 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl27 (9 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul2 (30 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul13 (15 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul4 (21 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul22 (11 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Psychrobacter urativorans)
Large ribosomal subunit protein bl17 (13 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us11 (13 kDa, Protein from Psychrobacter urativorans)
Small ribosomal subunit protein us4 (24 kDa, Protein from Psychrobacter urativorans)

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EMD-18558

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Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Release date: Dec. 27, 2023
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8qpp
Q-score: 0.415

Park EN, Mackens-Kiani T, Berhane R, Esser H, Erdenebat C, Burroughs AM, Berninghausen O, Aravind L, Beckmann R, Green R, Buskirk AR

EMBO J (2024) 43 pp. 484-506 [ DOI: doi:10.1038/s44318-023-00010-3 Pubmed: 38177497 ]

Sample:

30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl28 (6 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul2 (30 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis)
5s rrna (112-mer) (36 kDa, RNA from Bacillus subtilis)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl27 (8 kDa, Protein from Bacillus subtilis)
16s rrna (1533-mer) (496 kDa, RNA from Bacillus subtilis)
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l9 (16 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl33 (5 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul24 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul6 (19 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl31 (7 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl17 (13 kDa, Protein from Bacillus subtilis)
Trna (77-mer) (24 kDa, RNA from Bacillus subtilis)
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis)
Muts2-disome complex from b. subtilis, focus refined, stalled 70s (Complex from Bacillus subtilis)
Large ribosomal subunit protein ul23 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s14 type z (7 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Bacillus subtilis)
Mrna (33-mer) (10 kDa, RNA from Bacillus subtilis)
Endonuclease muts2 (87 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Bacillus subtilis)
23s ribosomal rna (949 kDa, RNA from Bacillus subtilis)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis)

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Sort by: Download

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Display: Statistics

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Select database:

EMDB [2]

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