Bacillus subtilis MutS2-collided disome complex (stalled 70S)
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 8r55
Q-score: 0.386
Park EN, Mackens-Kiani T, Berhane R, Esser H, Erdenebat C, Burroughs AM, Berninghausen O, Aravind L, Beckmann R, Green R, Buskirk AR
EMBO J (2024) 43 pp. 484-506 [ DOI: doi:10.1038/s44318-023-00010-3 Pubmed: 38177497 ]
- 30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Bacillus subtilis)
- Trna (77-mer) (24 kDa, RNA from Bacillus subtilis)
- 30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl27 (8 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul24 (10 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis)
- 5s rrna (112-mer) (36 kDa, RNA from Bacillus subtilis)
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl33 (5 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl31 (7 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl28 (6 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis)
- 23s rna (2887-mer) (949 kDa, RNA from Bacillus subtilis)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Bacillus subtilis)
- B. subtilis endonuclease muts2 binding the collided ribosome interface (Complex from Bacillus subtilis)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
- 16s rrna (1533-mer) (496 kDa, RNA from Bacillus subtilis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis)
- Trna (73-mer) (23 kDa, RNA from Bacillus subtilis)
- Endonuclease muts2 (87 kDa, Protein from Bacillus subtilis)
- Muts2-disome complex from b. subtilis, focus refined, collided 70s (Complex from Bacillus subtilis)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl17 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis)
- Mrna (33-mer) (10 kDa, RNA from Bacillus subtilis)
- 50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Bacillus subtilis)
Bacillus subtilis MutS2-collided disome complex (stalled 70S)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8qpp
Q-score: 0.415
Park EN, Mackens-Kiani T, Berhane R, Esser H, Erdenebat C, Burroughs AM, Berninghausen O, Aravind L, Beckmann R, Green R, Buskirk AR
EMBO J (2024) 43 pp. 484-506 [ DOI: doi:10.1038/s44318-023-00010-3 Pubmed: 38177497 ]
- 30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Bacillus subtilis)
- Trna (77-mer) (24 kDa, RNA from Bacillus subtilis)
- 30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl27 (8 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul24 (10 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis)
- 5s rrna (112-mer) (36 kDa, RNA from Bacillus subtilis)
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis)
- Muts2-disome complex from b. subtilis, focus refined, stalled 70s (Complex from Bacillus subtilis)
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl33 (5 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl31 (7 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl28 (6 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
- 16s rrna (1533-mer) (496 kDa, RNA from Bacillus subtilis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis)
- Endonuclease muts2 (87 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl17 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l9 (16 kDa, Protein from Bacillus subtilis)
- Mrna (33-mer) (10 kDa, RNA from Bacillus subtilis)
- 50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis)
- 23s ribosomal rna (949 kDa, RNA from Bacillus subtilis)
- 30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Bacillus subtilis)
Cryo-EM reconstruction of the large subunit of the chloroplast ribosome
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 5mmi
Q-score: 0.469
Bieri P, Leibundgut M, Saurer M, Boehringer D, Ban N
EMBO J (2017) 36 pp. 475-486 [ Pubmed: 28007896 DOI: doi:10.15252/embj.201695959 ]
- Plastid ribosomal protein ul10c (26 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bl9c (22 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l2, chloroplastic (29 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l14, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l22, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 5s ribosomal rna (39 kDa, RNA from Spinacia oleracea)
- 50s ribosomal protein l32, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l23, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l33, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- 23s ribosomal rna (911 kDa, RNA from Spinacia oleracea)
- Plastid ribosomal protein ul15c (29 kDa, Protein from Spinacia oleracea)
- Zinc ion (65 Da, Ligand)
- Plastid ribosomal protein ul6c (24 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l20, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul29c (19 kDa, Protein from Spinacia oleracea)
- E-site trna (589 Da, RNA from Spinacia oleracea)
- Plastid ribosomal protein bl17c (14 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul3c (33 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l16, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l21, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein cl37, psrp5 (15 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l36, chloroplastic (4 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bl27c (21 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l35, chloroplastic (17 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l11, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l19, chloroplastic (26 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bl28c (16 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul24c (21 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l34, chloroplastic (16 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l13, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul5c (28 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l31 (14 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul18c (18 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul4c (32 kDa, Protein from Spinacia oleracea)
- 4.5s ribosomal rna (34 kDa, RNA from Spinacia oleracea)
- Chloroplast 70s ribosome (2 MDa, Complex from Spinacia oleracea)
- 50s ribosomal protein 6, chloroplastic (12 kDa, Protein from Spinacia oleracea)
Cryo-EM reconstruction of the 70S chloroplast ribosome
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 5mmm
Q-score: 0.406
Bieri P, Leibundgut M, Saurer M, Boehringer D, Ban N
EMBO J (2017) 36 pp. 475-486 [ Pubmed: 28007896 DOI: doi:10.15252/embj.201695959 ]
- 50s ribosomal protein l23, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s16, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Ribosome-binding factor psrp1, chloroplastic (33 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul24c (21 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us17c (18 kDa, Protein from Spinacia oleracea)
- 23s ribosomal rna (911 kDa, RNA from Spinacia oleracea)
- 30s ribosomal protein s7, chloroplastic (17 kDa, Protein from Spinacia oleracea)
- 5s ribosomal rna (39 kDa, RNA from Spinacia oleracea)
- Plastid ribosomal protein ul29c (19 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul5c (28 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l16, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l20, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- Chloroplast 70s ribosome (2 MDa, Complex from Spinacia oleracea)
- 50s ribosomal protein l13, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s12, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s2, chloroplastic (26 kDa, Protein from Spinacia oleracea)
- Zinc ion (65 Da, Ligand)
- Plastid ribosomal protein bs6c (23 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l22, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul4c (32 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s11, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- 4.5s ribosomal rna (34 kDa, RNA from Spinacia oleracea)
- Plastid ribosomal protein bs1c (14 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s5, chloroplastic (33 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l2, chloroplastic (29 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bl27c (21 kDa, Protein from Spinacia oleracea)
- 16s ribosomal rna (483 kDa, RNA from Spinacia oleracea)
- 30s ribosomal protein 2, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us10c (21 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l21, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l32, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul15c (29 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein 3, chloroplastic (20 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s8, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul14c (14 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l36, chloroplastic (4 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l34, chloroplastic (16 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s19 alpha, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs21c (20 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s31, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bl9c (22 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein cl37, psrp5 (15 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul10c (26 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s18, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul18c (18 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein 6, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs20c (20 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s14, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l33, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l11, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- Magnesium ion (24 Da, Ligand)
- Trna-phe (24 kDa, RNA from Spinacia oleracea)
- Plastid ribosomal protein ul3c (33 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l14, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s15, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l31 (14 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us13c (19 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul6c (24 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us9c (22 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bl28c (16 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l19, chloroplastic (26 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l35, chloroplastic (17 kDa, Protein from Spinacia oleracea)