Cryo-EM structure of the human 55S mitoribosome with Tigecycline
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8k2a
Q-score: 0.545
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Small ribosomal subunit protein us14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs6m (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17m (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms27 (47 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us12m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms25 (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs18m (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms39 (78 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein ms23 (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs1m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5m (48 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3m (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms26 (24 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms37 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us11m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10m (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs16m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein ms22 (41 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- 55s mitoribosome with tigecycline (Complex from Homo sapiens)
- Small ribosomal subunit protein ms31 (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms33 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms34 (25 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms38 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9m (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us7m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms35 (36 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms29 (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms40 (29 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs21m (10 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8xt0
Q-score: 0.434
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms29 (45 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs21m (10 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein ms37 (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9m (45 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs1m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs18m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms35 (36 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us7m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms38 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms26 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms23 (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms31 (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms22 (41 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us11m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms40 (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms33 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs16m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us3m (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5m (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms34 (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17m (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- 55s ribosome with tigecycline (Complex from Homo sapiens)
- Small ribosomal subunit protein ms39 (78 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs6m (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10m (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms25 (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms27 (47 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8xt2
Q-score: 0.415
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms29 (45 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs21m (10 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein ms37 (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9m (45 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs1m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs18m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms35 (36 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us7m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms38 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms26 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms23 (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms31 (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms22 (41 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us11m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms40 (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms33 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs16m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us3m (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5m (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms34 (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17m (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- 55s ribosome with tigecycline (Complex from Homo sapiens)
- Small ribosomal subunit protein ms39 (78 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs6m (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10m (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms25 (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms27 (47 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8apo
Q-score: 0.231
Tobiasson V, Berzina I, Amunts A
Nat Commun (2022) 13 pp. 6132-6132 [ Pubmed: 36253367 DOI: doi:10.1038/s41467-022-33582-5 ]
- Ms33 (9 kDa, Protein from Polytomella magna)
- Bl19m (19 kDa, Protein from Polytomella magna)
- Mtssu-4 (108 kDa, RNA from Polytomella magna)
- Bl31m (8 kDa, Protein from Polytomella magna)
- Bl25m (28 kDa, Protein from Polytomella magna)
- Bs16m (14 kDa, Protein from Polytomella magna)
- Us5m (25 kDa, Protein from Polytomella magna)
- Ms34 (14 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Unknown (783 Da, Protein from Polytomella magna)
- Ms37 (9 kDa, Protein from Polytomella magna)
- Ul18m (12 kDa, Protein from Polytomella magna)
- Bl35m (16 kDa, Protein from Polytomella magna)
- Bl17m (20 kDa, Protein from Polytomella magna)
- Ml64 (14 kDa, Protein from Polytomella magna)
- Ms106 (18 kDa, Protein from Polytomella magna)
- Mtssu-3 (122 kDa, RNA from Polytomella magna)
- Ms31 (66 kDa, Protein from Polytomella magna)
- Mtlsu-4 (23 kDa, RNA from Polytomella magna)
- Ul16m (19 kDa, Protein from Polytomella magna)
- Unknown (954 Da, Protein from Polytomella magna)
- Ms26 (19 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Bl32m (6 kDa, Protein from Polytomella magna)
- Mtlsu-5 (43 kDa, RNA from Polytomella magna)
- Ml123 (45 kDa, Protein from Polytomella magna)
- Ms29 (39 kDa, Protein from Polytomella magna)
- Ms111 (17 kDa, Protein from Polytomella magna)
- Bl33m (5 kDa, Protein from Polytomella magna)
- Bl28m (15 kDa, Protein from Polytomella magna)
- Ms38 (4 kDa, Protein from Polytomella magna)
- Us8m (43 kDa, Protein from Polytomella magna)
- Ms45 (30 kDa, Protein from Polytomella magna)
- P-site trna anticodon loop (7 kDa, RNA from Polytomella magna)
- Ml128 (2 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Zinc ion (65 Da, Ligand)
- Ml63 (7 kDa, Protein from Polytomella magna)
- Mtlsu-8 (112 kDa, RNA from Polytomella magna)
- Ml118 (40 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Ml87 (16 kDa, Protein from Polytomella magna)
- Ul13m (21 kDa, Protein from Polytomella magna)
- Bl36m (5 kDa, Protein from Polytomella magna)
- Mtlsu-1 (35 kDa, RNA from Polytomella magna)
- Ul29m (14 kDa, Protein from Polytomella magna)
- Ul3m (34 kDa, Protein from Polytomella magna)
- Ml125 (22 kDa, Protein from Polytomella magna)
- Us3m-2 (12 kDa, Protein from Polytomella magna)
- Bl24m (13 kDa, Protein from Polytomella magna)
- Ul22m (21 kDa, Protein from Polytomella magna)
- Ul30m (20 kDa, Protein from Polytomella magna)
- Ml40 (10 kDa, Protein from Polytomella magna)
- Ul6m (27 kDa, Protein from Polytomella magna)
- Ml122 (7 kDa, Protein from Polytomella magna)
- Bs21m (8 kDa, Protein from Polytomella magna)
- Ml120 (22 kDa, Protein from Polytomella magna)
- A-site trna anticodon loop (6 kDa, RNA from Polytomella magna)
- Us4m-2 (20 kDa, Protein from Polytomella magna)
- Mtlsu-2 (26 kDa, RNA from Polytomella magna)
- Ml126 (44 kDa, Protein from Polytomella magna)
- Us10m (45 kDa, Protein from Polytomella magna)
- Ul5m (21 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Mt-5s (22 kDa, RNA from Polytomella magna)
- Bs1m (27 kDa, Protein from Polytomella magna)
- Us11m (12 kDa, Protein from Polytomella magna)
- Us12m (13 kDa, Protein from Polytomella magna)
- Unknown (5 kDa, Protein from Polytomella magna)
- Bs18m (10 kDa, Protein from Polytomella magna)
- Ul9m (6 kDa, Protein from Polytomella magna)
- Mtlsu-6 (35 kDa, RNA from Polytomella magna)
- Ms108 (5 kDa, Protein from Polytomella magna)
- Mrna (2 kDa, RNA from Polytomella magna)
- Water (18 Da, Ligand)
- Bl21m (22 kDa, Protein from Polytomella magna)
- Ms113 (7 kDa, Protein from Polytomella magna)
- Bl34m (6 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Mtlsu-3 (66 kDa, RNA from Polytomella magna)
- Ul15m (22 kDa, Protein from Polytomella magna)
- Ml121 (27 kDa, Protein from Polytomella magna)
- Ms109 (18 kDa, Protein from Polytomella magna)
- Ms112 (7 kDa, Protein from Polytomella magna)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ml124 (52 kDa, Protein from Polytomella magna)
- Ul4m (33 kDa, Protein from Polytomella magna)
- Us13m (12 kDa, Protein from Polytomella magna)
- Ms35 (19 kDa, Protein from Polytomella magna)
- Mtssu-1 (32 kDa, RNA from Polytomella magna)
- Ml105 (15 kDa, Protein from Polytomella magna)
- Mitochondrial ribosome from polytomella magna in complex with a and p site trna as well as mrna (Complex from Polytomella magna)
- Ms23 (19 kDa, Protein from Polytomella magna)
- Mtlsu-7 (171 kDa, RNA from Polytomella magna)
- Ms110 (11 kDa, Protein from Polytomella magna)
- Ms116 (10 kDa, Protein from Polytomella magna)
- Magnesium ion (24 Da, Ligand)
- Unknown (3 kDa, Protein from Polytomella magna)
- Ml127 (16 kDa, Protein from Polytomella magna)
- Ml41 (10 kDa, Protein from Polytomella magna)
- Us2m (26 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Us4m (25 kDa, Protein from Polytomella magna)
- Us15m (18 kDa, Protein from Polytomella magna)
- Potassium ion (39 Da, Ligand)
- Ms115 (40 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Us7m (12 kDa, Protein from Polytomella magna)
- Us6m (13 kDa, Protein from Polytomella magna)
- Ml46 (20 kDa, Protein from Polytomella magna)
- Bl20m (13 kDa, Protein from Polytomella magna)
- Ms107 (42 kDa, Protein from Polytomella magna)
- Bs19m (10 kDa, Protein from Polytomella magna)
- Mtssu-2 (67 kDa, RNA from Polytomella magna)
- Ul23m (18 kDa, Protein from Polytomella magna)
- Bl27m (16 kDa, Protein from Polytomella magna)
- Ms114 (15 kDa, Protein from Polytomella magna)
- Ul2m (33 kDa, Protein from Polytomella magna)
- Us14m (13 kDa, Protein from Polytomella magna)
- Ml129 (8 kDa, Protein from Polytomella magna)
- Us7m-2 (9 kDa, Protein from Polytomella magna)
- Us3m (31 kDa, Protein from Polytomella magna)
- Ul14m (13 kDa, Protein from Polytomella magna)
- Us9m (32 kDa, Protein from Polytomella magna)
- Ml43 (14 kDa, Protein from Polytomella magna)
- Us17m (15 kDa, Protein from Polytomella magna)
Small subunit of the Chlamydomonas reinhardtii mitoribosome
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7pkq
Q-score: 0.231
Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Foerster F, Engel BD, Giege P, Drouard L, Hashem Y
To Be Published
- S2 rrna (68 kDa, RNA from Chlamydomonas reinhardtii)
- Ms107 (43 kDa, Protein from Chlamydomonas reinhardtii)
- Us12m (14 kDa, Protein from Chlamydomonas reinhardtii)
- S4 rrna (133 kDa, RNA from Chlamydomonas reinhardtii)
- S5 drbm domain-containing protein (38 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein s13 (13 kDa, Protein from Chlamydomonas reinhardtii)
- 30s ribosomal protein s9, chloroplastic (45 kDa, Protein from Chlamydomonas reinhardtii)
- Small subunit of the chlamydomonas reinhardtii mitochondrial ribosome (Complex from Chlamydomonas reinhardtii)
- Unk3 (4 kDa, Protein from Chlamydomonas reinhardtii)
- Ms106 (51 kDa, Protein from Chlamydomonas reinhardtii)
- Bs18m (36 kDa, Protein from Chlamydomonas reinhardtii)
- Ms45 (102 kDa, Protein from Chlamydomonas reinhardtii)
- Us17m (22 kDa, Protein from Chlamydomonas reinhardtii)
- Us19m (12 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_s3_c domain-containing protein (50 kDa, Protein from Chlamydomonas reinhardtii)
- Unk4 (6 kDa, Protein from Chlamydomonas reinhardtii)
- Unk1 (2 kDa, Protein from Chlamydomonas reinhardtii)
- Us4m (43 kDa, Protein from Chlamydomonas reinhardtii)
- Ms35 (88 kDa, Protein from Chlamydomonas reinhardtii)
- S1 rrna (32 kDa, RNA from Chlamydomonas reinhardtii)
- Unk5 (9 kDa, Protein from Chlamydomonas reinhardtii)
- Ms29 (49 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein s14 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Bs1m (26 kDa, Protein from Chlamydomonas reinhardtii)
- S3 rrna (126 kDa, RNA from Chlamydomonas reinhardtii)
- Us2m (53 kDa, Protein from Chlamydomonas reinhardtii)
- Us11m (23 kDa, Protein from Chlamydomonas reinhardtii)
- Ms34 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Ms45-insert (36 kDa, Protein from Chlamydomonas reinhardtii)
- Ms31/46 (15 kDa, Protein from Chlamydomonas reinhardtii)
- Ms23 (20 kDa, Protein from Chlamydomonas reinhardtii)
- Unk6 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein s6 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Plastid-specific ribosomal protein 4 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Ms26 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Us15m (34 kDa, Protein from Chlamydomonas reinhardtii)
- Unk2 (12 kDa, Protein from Chlamydomonas reinhardtii)
- Bs16m (10 kDa, Protein from Chlamydomonas reinhardtii)
- Us7m,ribosomal_s7 domain-containing protein,ribosomal_s7 domain-containing protein,ribosomal_s7 domain-containing protein (32 kDa, Protein from Chlamydomonas reinhardtii)
- Ms105 (28 kDa, Protein from Chlamydomonas reinhardtii)
- Us8m (44 kDa, Protein from Chlamydomonas reinhardtii)
- Ms33 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_s10 domain-containing protein (61 kDa, Protein from Chlamydomonas reinhardtii)
Yeast mitochondrial small subunit assembly intermediate (State 1)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8d8j
Q-score: 0.425
Harper NJ, Burnside C, Klinge S
Nature (2023) 614 pp. 175-181 [ DOI: doi:10.1038/s41586-022-05621-0 Pubmed: 36482135 ]
- 37s ribosomal protein s28, mitochondrial (33 kDa, Protein from Saccharomyces cerevisiae)
- Yeast mitochondrial small subunit assembly intermediate (state 3) (1 MDa, Complex from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- 37s ribosomal protein s17, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- Us12m (16 kDa, Protein from Saccharomyces cerevisiae)
- 15s ribosomal rna (549 kDa, RNA from Saccharomyces cerevisiae)
- Mitochondrial group i intron splicing factor ccm1 (101 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s16, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp17, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp13, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s5, mitochondrial (34 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Protein fyv4, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s8, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- Probable s-adenosyl-l-methionine-dependent rna methyltransferase rsm22, mitochondrial (72 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein pet123, mitochondrial (36 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s35, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein rsm18, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein nam9, mitochondrial (56 kDa, Protein from Saccharomyces cerevisiae)
Structure of the mitochondrial ribosome from Polytomella magna
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8a22
Q-score: 0.438
Tobiasson V, Berzina I, Amunts A
Nat Commun (2022) 13 pp. 6132-6132 [ DOI: doi:10.1038/s41467-022-33582-5 Pubmed: 36253367 ]
- Ml40 (10 kDa, Protein from Polytomella magna)
- Ml41 (10 kDa, Protein from Polytomella magna)
- Bs1m (27 kDa, Protein from Polytomella magna)
- Mt-5s (22 kDa, RNA from Polytomella magna)
- Bl31m (8 kDa, Protein from Polytomella magna)
- Unknown (783 Da, Protein from Polytomella magna)
- Ml122 (7 kDa, Protein from Polytomella magna)
- Ms34 (14 kDa, Protein from Polytomella magna)
- Ml63 (7 kDa, Protein from Polytomella magna)
- Us11m (12 kDa, Protein from Polytomella magna)
- Ul6m (27 kDa, Protein from Polytomella magna)
- Us3m (32 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Ms35 (19 kDa, Protein from Polytomella magna)
- Ml43 (14 kDa, Protein from Polytomella magna)
- Ms45 (30 kDa, Protein from Polytomella magna)
- Ml121 (27 kDa, Protein from Polytomella magna)
- Us4m-2 (fragment) (20 kDa, Protein from Polytomella magna)
- Mtssu-3 (122 kDa, RNA from Polytomella magna)
- Us7m-2 (fragment) (9 kDa, Protein from Polytomella magna)
- Magnesium ion (24 Da, Ligand)
- Ml105 (15 kDa, Protein from Polytomella magna)
- Ul23m (18 kDa, Protein from Polytomella magna)
- Ms108 (5 kDa, Protein from Polytomella magna)
- Us5m (25 kDa, Protein from Polytomella magna)
- Mtlsu-8 (112 kDa, RNA from Polytomella magna)
- Ms110 (11 kDa, Protein from Polytomella magna)
- Ms112 (7 kDa, Protein from Polytomella magna)
- Ml129 (8 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Ml64 (14 kDa, Protein from Polytomella magna)
- Us3m-2 (fragment) (12 kDa, Protein from Polytomella magna)
- Us4m (25 kDa, Protein from Polytomella magna)
- Bl31m (6 kDa, Protein from Polytomella magna)
- Bl35m (16 kDa, Protein from Polytomella magna)
- Bl25m (28 kDa, Protein from Polytomella magna)
- Us15m (18 kDa, Protein from Polytomella magna)
- Mtlsu-5 (45 kDa, RNA from Polytomella magna)
- Ms106 (18 kDa, Protein from Polytomella magna)
- Bl17m (20 kDa, Protein from Polytomella magna)
- Ml126 (44 kDa, Protein from Polytomella magna)
- Ml128 (2 kDa, Protein from Polytomella magna)
- Bl33m (5 kDa, Protein from Polytomella magna)
- Mtssu-1 (32 kDa, RNA from Polytomella magna)
- Mtlsu-6 (42 kDa, RNA from Polytomella magna)
- Ms37 (9 kDa, Protein from Polytomella magna)
- Ul30m (20 kDa, Protein from Polytomella magna)
- Ml125 (22 kDa, Protein from Polytomella magna)
- Ms113 (7 kDa, Protein from Polytomella magna)
- Ul2m (33 kDa, Protein from Polytomella magna)
- Ul4m (33 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Bl19m (19 kDa, Protein from Polytomella magna)
- Ml46 (20 kDa, Protein from Polytomella magna)
- Ms116 (10 kDa, Protein from Polytomella magna)
- Bl36m (5 kDa, Protein from Polytomella magna)
- Ms29 (39 kDa, Protein from Polytomella magna)
- Mtssu-4 (112 kDa, RNA from Polytomella magna)
- Ms33 (9 kDa, Protein from Polytomella magna)
- Us17m (15 kDa, Protein from Polytomella magna)
- Ml123 (45 kDa, Protein from Polytomella magna)
- Unknown (3 kDa, Protein from Polytomella magna)
- Ul29m (14 kDa, Protein from Polytomella magna)
- Us7m (12 kDa, Protein from Polytomella magna)
- Ul18m (12 kDa, Protein from Polytomella magna)
- Ml118 (40 kDa, Protein from Polytomella magna)
- Ms109 (18 kDa, Protein from Polytomella magna)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- Bl24m (13 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Zinc ion (65 Da, Ligand)
- Ul14m (13 kDa, Protein from Polytomella magna)
- Bs18m (10 kDa, Protein from Polytomella magna)
- Ms111 (17 kDa, Protein from Polytomella magna)
- Ms31 (66 kDa, Protein from Polytomella magna)
- Ms115 (40 kDa, Protein from Polytomella magna)
- Ms26 (19 kDa, Protein from Polytomella magna)
- Mtlsu-4 (23 kDa, RNA from Polytomella magna)
- Ul3m (34 kDa, Protein from Polytomella magna)
- Ul22m (21 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Ms114 (15 kDa, Protein from Polytomella magna)
- Bl27m (16 kDa, Protein from Polytomella magna)
- Us10m (45 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Us9m (32 kDa, Protein from Polytomella magna)
- Mtlsu-1 (35 kDa, RNA from Polytomella magna)
- Us14m (13 kDa, Protein from Polytomella magna)
- Bl21m (22 kDa, Protein from Polytomella magna)
- Us13m (12 kDa, Protein from Polytomella magna)
- Bs21m (8 kDa, Protein from Polytomella magna)
- Mtssu-2 (68 kDa, RNA from Polytomella magna)
- Potassium ion (39 Da, Ligand)
- Unknown (954 Da, Protein from Polytomella magna)
- Mitochondrial ribosome from polytomella magna (Complex from Polytomella magna)
- Ul5m (21 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Bl20m (13 kDa, Protein from Polytomella magna)
- Ul15m (22 kDa, Protein from Polytomella magna)
- Mtlsu-2 (26 kDa, RNA from Polytomella magna)
- Ml120 (22 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Mtlsu-7 (185 kDa, RNA from Polytomella magna)
- Ms107 (42 kDa, Protein from Polytomella magna)
- Bs16m (14 kDa, Protein from Polytomella magna)
- Bs19m (10 kDa, Protein from Polytomella magna)
- Ms38 (4 kDa, Protein from Polytomella magna)
- Ml127 (16 kDa, Protein from Polytomella magna)
- Us2m (26 kDa, Protein from Polytomella magna)
- Ul16m (19 kDa, Protein from Polytomella magna)
- Ul13m (21 kDa, Protein from Polytomella magna)
- Mtlsu-3 (67 kDa, RNA from Polytomella magna)
- Us8m (43 kDa, Protein from Polytomella magna)
- Us12m (13 kDa, Protein from Polytomella magna)
- Us6m (13 kDa, Protein from Polytomella magna)
- Ms23 (19 kDa, Protein from Polytomella magna)
- Ml124 (52 kDa, Protein from Polytomella magna)
- Ml87 (16 kDa, Protein from Polytomella magna)
- Ul9m (6 kDa, Protein from Polytomella magna)
- Bl34m (6 kDa, Protein from Polytomella magna)
- Bl28m (15 kDa, Protein from Polytomella magna)
Structure of the mitochondrial ribosome from Polytomella magna with tRNA bound to the P site
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8apn
Q-score: 0.399
Tobiasson V, Berzina I, Amunts A
Nat Commun (2022) 13 pp. 6132-6132 [ DOI: doi:10.1038/s41467-022-33582-5 Pubmed: 36253367 ]
- Ml40 (10 kDa, Protein from Polytomella magna)
- Ml41 (10 kDa, Protein from Polytomella magna)
- Bs1m (27 kDa, Protein from Polytomella magna)
- Mt-5s (22 kDa, RNA from Polytomella magna)
- Bl31m (8 kDa, Protein from Polytomella magna)
- Unknown (783 Da, Protein from Polytomella magna)
- Mitochondrial ribosome from polytomella magna in complex with p-site trna as well as mrna (Complex from Polytomella magna)
- Ml122 (7 kDa, Protein from Polytomella magna)
- Ms34 (14 kDa, Protein from Polytomella magna)
- Ml63 (7 kDa, Protein from Polytomella magna)
- Us11m (12 kDa, Protein from Polytomella magna)
- Ul6m (27 kDa, Protein from Polytomella magna)
- Us3m (32 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Ms35 (19 kDa, Protein from Polytomella magna)
- Ml43 (14 kDa, Protein from Polytomella magna)
- Ms45 (30 kDa, Protein from Polytomella magna)
- Ml121 (27 kDa, Protein from Polytomella magna)
- Mtssu-3 (122 kDa, RNA from Polytomella magna)
- Magnesium ion (24 Da, Ligand)
- Ul23m (18 kDa, Protein from Polytomella magna)
- Ms108 (5 kDa, Protein from Polytomella magna)
- Us5m (25 kDa, Protein from Polytomella magna)
- Mtlsu-8 (112 kDa, RNA from Polytomella magna)
- Ms110 (11 kDa, Protein from Polytomella magna)
- Mtlsu-3 (66 kDa, RNA from Polytomella magna)
- Ms112 (7 kDa, Protein from Polytomella magna)
- Ml129 (8 kDa, Protein from Polytomella magna)
- Hypothetical protein (13 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Ml64 (14 kDa, Protein from Polytomella magna)
- Us4m (25 kDa, Protein from Polytomella magna)
- Bl35m (16 kDa, Protein from Polytomella magna)
- Bl25m (28 kDa, Protein from Polytomella magna)
- Us15m (18 kDa, Protein from Polytomella magna)
- Ms106 (18 kDa, Protein from Polytomella magna)
- Bl17m (20 kDa, Protein from Polytomella magna)
- Ml126 (44 kDa, Protein from Polytomella magna)
- Ml128 (2 kDa, Protein from Polytomella magna)
- Mtlsu-6 (35 kDa, RNA from Polytomella magna)
- Bl33m (5 kDa, Protein from Polytomella magna)
- Mtssu-1 (32 kDa, RNA from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Ms37 (9 kDa, Protein from Polytomella magna)
- Bl32m (6 kDa, Protein from Polytomella magna)
- Ul30m (20 kDa, Protein from Polytomella magna)
- Us3m-2 (12 kDa, Protein from Polytomella magna)
- Unknown (5 kDa, Protein from Polytomella magna)
- Ml125 (22 kDa, Protein from Polytomella magna)
- Ms113 (7 kDa, Protein from Polytomella magna)
- Ul2m (33 kDa, Protein from Polytomella magna)
- Mtssu-4 (108 kDa, RNA from Polytomella magna)
- Ul4m (33 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Bl19m (19 kDa, Protein from Polytomella magna)
- Ml46 (20 kDa, Protein from Polytomella magna)
- Ms116 (10 kDa, Protein from Polytomella magna)
- Bl36m (5 kDa, Protein from Polytomella magna)
- Ms29 (39 kDa, Protein from Polytomella magna)
- Mrna (1 kDa, RNA from Polytomella magna)
- Ms33 (9 kDa, Protein from Polytomella magna)
- Us17m (15 kDa, Protein from Polytomella magna)
- Ml105 (15 kDa, Protein from Polytomella magna)
- Ml123 (45 kDa, Protein from Polytomella magna)
- Unknown (3 kDa, Protein from Polytomella magna)
- Ul29m (14 kDa, Protein from Polytomella magna)
- Us7m (12 kDa, Protein from Polytomella magna)
- Us4m-2 (20 kDa, Protein from Polytomella magna)
- Ul18m (12 kDa, Protein from Polytomella magna)
- Ml118 (40 kDa, Protein from Polytomella magna)
- Ms109 (18 kDa, Protein from Polytomella magna)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- P-site trna (23 kDa, RNA from Polytomella magna)
- Bl24m (13 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Zinc ion (65 Da, Ligand)
- Us7m-2 (9 kDa, Protein from Polytomella magna)
- Bs18m (10 kDa, Protein from Polytomella magna)
- Ms111 (17 kDa, Protein from Polytomella magna)
- Ms31 (66 kDa, Protein from Polytomella magna)
- Ms115 (40 kDa, Protein from Polytomella magna)
- Ms26 (19 kDa, Protein from Polytomella magna)
- Mtlsu-4 (23 kDa, RNA from Polytomella magna)
- Ul3m (34 kDa, Protein from Polytomella magna)
- Ul22m (21 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Ms114 (15 kDa, Protein from Polytomella magna)
- Bl27m (16 kDa, Protein from Polytomella magna)
- Us10m (45 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Us9m (32 kDa, Protein from Polytomella magna)
- Mtlsu-1 (35 kDa, RNA from Polytomella magna)
- Us14m (13 kDa, Protein from Polytomella magna)
- Bl21m (22 kDa, Protein from Polytomella magna)
- Us13m (12 kDa, Protein from Polytomella magna)
- Bs21m (8 kDa, Protein from Polytomella magna)
- Potassium ion (39 Da, Ligand)
- Unknown (954 Da, Protein from Polytomella magna)
- Ul5m (21 kDa, Protein from Polytomella magna)
- Mtlsu-7 (171 kDa, RNA from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Bl20m (13 kDa, Protein from Polytomella magna)
- Ul15m (22 kDa, Protein from Polytomella magna)
- Mtlsu-2 (26 kDa, RNA from Polytomella magna)
- Ml120 (22 kDa, Protein from Polytomella magna)
- Ms107 (42 kDa, Protein from Polytomella magna)
- Bs16m (14 kDa, Protein from Polytomella magna)
- Bs19m (10 kDa, Protein from Polytomella magna)
- Ms38 (4 kDa, Protein from Polytomella magna)
- Ml127 (16 kDa, Protein from Polytomella magna)
- Us2m (26 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Ul16m (19 kDa, Protein from Polytomella magna)
- Mtssu-2 (67 kDa, RNA from Polytomella magna)
- Ul13m (21 kDa, Protein from Polytomella magna)
- Us8m (43 kDa, Protein from Polytomella magna)
- Us12m (13 kDa, Protein from Polytomella magna)
- Ms23 (19 kDa, Protein from Polytomella magna)
- Us6m (13 kDa, Protein from Polytomella magna)
- Ml124 (52 kDa, Protein from Polytomella magna)
- Ml87 (16 kDa, Protein from Polytomella magna)
- Ul9m (6 kDa, Protein from Polytomella magna)
- Bl34m (6 kDa, Protein from Polytomella magna)
- Ml116 (43 kDa, Protein from Polytomella magna)
- Mtlsu-5 (43 kDa, RNA from Polytomella magna)
- Bl28m (15 kDa, Protein from Polytomella magna)
Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7pub
Q-score: 0.436
Lenarcic T, Niemann M, Ramrath DJF, Calderaro S, Flugel T, Saurer M, Leibundgut M, Boehringer D, Prange C, Horn EK, Schneider A, Ban N
PNAS (2022) 119 [ Pubmed: 35042777 DOI: doi:10.1073/pnas.2114710118 ]
- Ms69 (21 kDa, Protein from Trypanosoma brucei brucei)
- Ms71 (20 kDa, Protein from Trypanosoma brucei brucei)
- Sod_fe_c domain-containing protein (48 kDa, Protein from Trypanosoma brucei brucei)
- Bs21m (23 kDa, Protein from Trypanosoma brucei brucei)
- Ms50 (131 kDa, Protein from Trypanosoma brucei brucei)
- Ms52 (84 kDa, Protein from Trypanosoma brucei brucei)
- Unkk (273 Da, Protein from Trypanosoma brucei brucei)
- Mt-saf3 (106 kDa, Protein from Trypanosoma brucei brucei)
- Us9m (50 kDa, Protein from Trypanosoma brucei brucei)
- Ms49 (137 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf38 (69 kDa, Protein from Trypanosoma brucei brucei)
- Ms38 (28 kDa, Protein from Trypanosoma brucei brucei)
- Ms63 (31 kDa, Protein from Trypanosoma brucei brucei)
- Ms72 (19 kDa, Protein from Trypanosoma brucei brucei)
- Us19m (28 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Ubiquitin-like domain-containing protein (26 kDa, Protein from Trypanosoma brucei brucei)
- Bs16m (22 kDa, Protein from Trypanosoma brucei brucei)
- Ms59 (35 kDa, Protein from Trypanosoma brucei brucei)
- Unki (869 Da, Protein from Trypanosoma brucei brucei)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Ribosomal_s5_c domain-containing protein (50 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf37 (37 kDa, Protein from Trypanosoma brucei brucei)
- Ms58 (35 kDa, Protein from Trypanosoma brucei brucei)
- Unk7 (3 kDa, Protein from Trypanosoma brucei brucei)
- Ms53 (75 kDa, Protein from Trypanosoma brucei brucei)
- Bs6m (18 kDa, Protein from Trypanosoma brucei brucei)
- Ms51 (95 kDa, Protein from Trypanosoma brucei brucei)
- Bs18m (36 kDa, Protein from Trypanosoma brucei brucei)
- Unkl (1 kDa, Protein from Trypanosoma brucei brucei)
- 30s ribosomal protein s8, putative (32 kDa, Protein from Trypanosoma brucei brucei)
- Ms37 (24 kDa, Protein from Trypanosoma brucei brucei)
- Us12m (10 kDa, Protein from Trypanosoma brucei brucei)
- 9s rrna (198 kDa, RNA from Trypanosoma brucei brucei)
- 30s ribosomal protein s17, putative (35 kDa, Protein from Trypanosoma brucei brucei)
- Akap7_nls domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Us14m (19 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf7 (76 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Unkf (3 kDa, Protein from Trypanosoma brucei brucei)
- Ms65 (30 kDa, Protein from Trypanosoma brucei brucei)
- Us11m (37 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Unkg (1 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf39 (89 kDa, Protein from Trypanosoma brucei brucei)
- Phosphate ion (94 Da, Ligand)
- Lysm domain-containing protein (94 kDa, Protein from Trypanosoma brucei brucei)
- Unke (4 kDa, Protein from Trypanosoma brucei brucei)
- Ms34 (28 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- Ms48 (201 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Ms70 (21 kDa, Protein from Trypanosoma brucei brucei)
- Ms56 (47 kDa, Protein from Trypanosoma brucei brucei)
- Unk (1 kDa, Protein from Trypanosoma brucei brucei)
- Late assembly intermediate of the trypanosoma brucei mitoribosomal small subunit (Complex from Trypanosoma brucei brucei)
- Ms35 (98 kDa, Protein from Trypanosoma brucei brucei)
- Acyl transferase-like protein (60 kDa, Protein from Trypanosoma brucei brucei)
- Dna photolyase, putative (95 kDa, Protein from Trypanosoma brucei brucei)
- Ms55 (66 kDa, Protein from Trypanosoma brucei brucei)
- Translation initiation factor if-2, putative (87 kDa, Protein from Trypanosoma brucei brucei)
- Ms61 (33 kDa, Protein from Trypanosoma brucei brucei)
- Ms73 (11 kDa, Protein from Trypanosoma brucei brucei)
- Us3m (9 kDa, Protein from Trypanosoma brucei brucei)
- Ms22 (73 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf6 (76 kDa, Protein from Trypanosoma brucei brucei)
- Superoxide dismutase, putative (29 kDa, Protein from Trypanosoma brucei brucei)
- Ms57 (45 kDa, Protein from Trypanosoma brucei brucei)
- Ms33 (21 kDa, Protein from Trypanosoma brucei brucei)
- Protein fyv4, mitochondrial (22 kDa, Protein from Trypanosoma brucei brucei)
- Rhodanese domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Ms54 (72 kDa, Protein from Trypanosoma brucei brucei)
- Ms60 (34 kDa, Protein from Trypanosoma brucei brucei)
- Ms29 (57 kDa, Protein from Trypanosoma brucei brucei)
- Ms62 (32 kDa, Protein from Trypanosoma brucei brucei)
- Ms26 (51 kDa, Protein from Trypanosoma brucei brucei)
- Ms74 (8 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf22 (39 kDa, Protein from Trypanosoma brucei brucei)
- Us15m (50 kDa, Protein from Trypanosoma brucei brucei)
- Ms23 (36 kDa, Protein from Trypanosoma brucei brucei)
- Ms66 (29 kDa, Protein from Trypanosoma brucei brucei)
- Ech_2 domain-containing protein (137 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf9 (69 kDa, Protein from Trypanosoma brucei brucei)
Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7pua
Q-score: 0.436
Lenarcic T, Niemann M, Ramrath DJF, Calderaro S, Flugel T, Saurer M, Leibundgut M, Boehringer D, Prange C, Horn EK, Schneider A, Ban N
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2114710118 Pubmed: 35042777 ]
- Ms29 (57 kDa, Protein from Trypanosoma brucei brucei)
- Ms54 (72 kDa, Protein from Trypanosoma brucei brucei)
- Unkc (783 Da, Protein from Trypanosoma brucei brucei)
- Ms74 (8 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Ms50 (131 kDa, Protein from Trypanosoma brucei brucei)
- Ppr_long domain-containing protein (116 kDa, Protein from Trypanosoma brucei brucei)
- Us14m (19 kDa, Protein from Trypanosoma brucei brucei)
- Unk8 (2 kDa, Protein from Trypanosoma brucei brucei)
- Unkf (3 kDa, Protein from Trypanosoma brucei brucei)
- Lmwpc domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Ms23 (36 kDa, Protein from Trypanosoma brucei brucei)
- Ubiquitin-like domain-containing protein (26 kDa, Protein from Trypanosoma brucei brucei)
- Acyl transferase-like protein, putative (60 kDa, Protein from Trypanosoma brucei brucei)
- Acyl carrier protein (16 kDa, Protein from Trypanosoma brucei brucei)
- Ms53 (75 kDa, Protein from Trypanosoma brucei brucei)
- Translation initiation factor if-2, putative (87 kDa, Protein from Trypanosoma brucei brucei)
- Ms35 (98 kDa, Protein from Trypanosoma brucei brucei)
- 9s rrna (198 kDa, RNA from Trypanosoma brucei brucei)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Bs16m (22 kDa, Protein from Trypanosoma brucei brucei)
- Ms59 (35 kDa, Protein from Trypanosoma brucei brucei)
- Unkp (2 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Mt-saf21 (39 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf37 (37 kDa, Protein from Trypanosoma brucei brucei)
- 9s rrna (919 Da, RNA from Trypanosoma brucei brucei)
- Us15m (50 kDa, Protein from Trypanosoma brucei brucei)
- Unkk (2 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Unk (698 Da, Protein from Trypanosoma brucei brucei)
- Mt-saf23 (38 kDa, Protein from Trypanosoma brucei brucei)
- Ms37 (24 kDa, Protein from Trypanosoma brucei brucei)
- Ms72 (19 kDa, Protein from Trypanosoma brucei brucei)
- Ms70 (21 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf3 (106 kDa, Protein from Trypanosoma brucei brucei)
- Ms65 (30 kDa, Protein from Trypanosoma brucei brucei)
- Unka (869 Da, Protein from Trypanosoma brucei brucei)
- Ms26 (51 kDa, Protein from Trypanosoma brucei brucei)
- 30s ribosomal protein s17, putative (35 kDa, Protein from Trypanosoma brucei brucei)
- Ms58 (35 kDa, Protein from Trypanosoma brucei brucei)
- Protein fyv4, mitochondrial (22 kDa, Protein from Trypanosoma brucei brucei)
- Bs21m (23 kDa, Protein from Trypanosoma brucei brucei)
- Ms62 (32 kDa, Protein from Trypanosoma brucei brucei)
- Unki (528 Da, Protein from Trypanosoma brucei brucei)
- Ms34 (28 kDa, Protein from Trypanosoma brucei brucei)
- 30s ribosomal protein s8, putative (32 kDa, Protein from Trypanosoma brucei brucei)
- Ms38 (28 kDa, Protein from Trypanosoma brucei brucei)
- Ms71 (20 kDa, Protein from Trypanosoma brucei brucei)
- Us3m (9 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf9 (69 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf39 (89 kDa, Protein from Trypanosoma brucei brucei)
- Unkd (1 kDa, Protein from Trypanosoma brucei brucei)
- Duf4379 domain-containing protein (16 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf7 (76 kDa, Protein from Trypanosoma brucei brucei)
- Ms56 (47 kDa, Protein from Trypanosoma brucei brucei)
- Bs6m (18 kDa, Protein from Trypanosoma brucei brucei)
- Us12m (10 kDa, Protein from Trypanosoma brucei brucei)
- Dna photolyase, putative (95 kDa, Protein from Trypanosoma brucei brucei)
- Ms22 (73 kDa, Protein from Trypanosoma brucei brucei)
- Bs18m (36 kDa, Protein from Trypanosoma brucei brucei)
- Ms73 (11 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf29 (20 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf38 (69 kDa, Protein from Trypanosoma brucei brucei)
- Ms57 (45 kDa, Protein from Trypanosoma brucei brucei)
- Phosphate ion (94 Da, Ligand)
- Mt-saf5 (86 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf27 (26 kDa, Protein from Trypanosoma brucei brucei)
- Us11m (37 kDa, Protein from Trypanosoma brucei brucei)
- Unkg (1 kDa, Protein from Trypanosoma brucei brucei)
- Us19m (28 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Lysm domain-containing protein (94 kDa, Protein from Trypanosoma brucei brucei)
- Unkg (23 kDa, Protein from Trypanosoma brucei brucei)
- Ms55 (66 kDa, Protein from Trypanosoma brucei brucei)
- Ms51 (93 kDa, Protein from Trypanosoma brucei brucei)
- Ms49 (137 kDa, Protein from Trypanosoma brucei brucei)
- Ms52 (84 kDa, Protein from Trypanosoma brucei brucei)
- Dihydroflavine-adenine dinucleotide (787 Da, Ligand)
- S-(2-{[n-(2-hydroxy-4-{[hydroxy(oxido)phosphino]oxy}-3,3-dimethylbutanoyl)-beta-alanyl]amino}ethyl) decanethioate (496 Da, Ligand)
- Rhodanese domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Ms63 (31 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf22 (39 kDa, Protein from Trypanosoma brucei brucei)
- Duf4460 domain-containing protein (76 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal_s5_c domain-containing protein (50 kDa, Protein from Trypanosoma brucei brucei)
- Ms69 (21 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf31 (17 kDa, Protein from Trypanosoma brucei brucei)
- Middle assembly intermediate of the trypanosoma brucei mitoribosomal small subunit (Complex from Trypanosoma brucei brucei)
- Us9m (50 kDa, Protein from Trypanosoma brucei brucei)
- Ms33 (21 kDa, Protein from Trypanosoma brucei brucei)