Translating 80S rabbit ribosome stalled by emetine with eEF2
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8vft
Q-score: 0.493
To Be Published
- Ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- El6 (33 kDa, Protein from Oryctolagus cuniculus)
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- Emetine (480 Da, Ligand)
- El14 (23 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Mrna (1 kDa, RNA from Oryctolagus cuniculus)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- El27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Rabbit ribosome stalled by emetine with eef2 (4 MDa, Complex from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Es10 (18 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- El15 (24 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (20 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (17 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- El37 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (14 kDa, Protein from Oryctolagus cuniculus)
- El40 (10 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- Us3 (26 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- El36 (12 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- E-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- El34 (13 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- Eef2 (95 kDa, Protein from Oryctolagus cuniculus)
CryoEM structure of wheat 40S ribosomal subunit, head domain
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 8r57
Q-score: 0.58
Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS
Int J Mol Sci (2023) 24 [ Pubmed: 38139282 DOI: doi:10.3390/ijms242417453 ]
- 40s ribosomal protein s3 (25 kDa, Protein from Triticum aestivum)
- Rna (458-mer) (584 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein s16 (16 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s19 (17 kDa, Protein from Triticum aestivum)
- Ubiquitin-like domain-containing protein (17 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s28 (7 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit from triticum aestivum (common wheat) (Complex from Triticum aestivum)
- 40s ribosomal protein s15 (17 kDa, Protein from Triticum aestivum)
- Water (18 Da, Ligand)
- Plectin/es10 n-terminal domain-containing protein (20 kDa, Protein from Triticum aestivum)
- Ribosomal protein rack1 subfamily. wd repeat g protein beta family (36 kDa, Protein from Triticum aestivum)
- Ribosomal protein s20 (14 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s25 (12 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us7c (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s12 (15 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Triticum aestivum)
- Putative ribosomal protein s18 (17 kDa, Protein from Triticum aestivum)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7a01
Q-score: 0.37
Abaeva IS, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova TV, Hashem Y, Hellen CUT
Cell Rep (2020) 33 pp. 108476-108476 [ Pubmed: 33296660 DOI: doi:10.1016/j.celrep.2020.108476 ]
- 18s ribosomal rna (580 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es26 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (8 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Complex between 80s ribosome and halv igr ires (Complex)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (15 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (14 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l6e_n domain-containing protein (4 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us19 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el8 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (26 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Uncharacterized protein (14 kDa, Protein from Oryctolagus cuniculus)
- Complex between 80s ribosome and halv igr ires (Complex from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (22 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- S5 drbm domain-containing protein (24 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Halastavi arva rna virus (Complex from Halastavi arva RNA virus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4,40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_s10 domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27a (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es30 (5 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (14 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s_sa_c domain-containing protein (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Internal ribosome entry site (48 kDa, RNA from Halastavi arva RNA virus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (8 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6zvk
Q-score: 0.421
Abaeva IS, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova TV, Hashem Y, Hellen CUT
Cell Rep (2020) 33 pp. 108476-108476 [ Pubmed: 33296660 DOI: doi:10.1016/j.celrep.2020.108476 ]
- 40s ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es26 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el28 (14 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l6e_n domain-containing protein (4 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us19 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el8 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Complex between 870s ribosome and halv igr ires (Complex)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- S5 drbm domain-containing protein (24 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- Halv igr ires (Complex from Halastavi arva RNA virus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_s10 domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es30 (5 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s_sa_c domain-containing protein (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us13 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Internal ribosome entry site (48 kDa, RNA from Halastavi arva RNA virus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosome (Complex from Oryctolagus cuniculus)
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6r5q
Q-score: 0.486
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (23 kDa, Protein from Oryctolagus cuniculus)
- El29 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (548 kDa, RNA from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- Mrna (Complex from Homo sapiens)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Mrna (1 kDa, RNA from Homo sapiens)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us17 (14 kDa, Protein from Oryctolagus cuniculus)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ribosome (Complex from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l24 (14 kDa, Protein from Oryctolagus cuniculus)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Trna (Complex from Saccharomyces cerevisiae)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex (post-state). (Complex)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- E-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Complex from Homo sapiens)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- El22 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- El8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6r6g
Q-score: 0.358
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
- 60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- El29 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (548 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Us19 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Srp (Complex from Canis lupus familiaris)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 54 kda protein (47 kDa, Protein from Canis lupus familiaris)
- 7s rna (66 kDa, RNA from Canis lupus familiaris)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Mrna (1 kDa, RNA from Homo sapiens)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s20 (11 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 14 kda protein (10 kDa, Protein from Canis lupus familiaris)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused nascent chain complex with srp. (Complex from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (21 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Mrna encoding xbp1u (Complex from Homo sapiens)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (11 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle subunit srp19 (12 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 9 kda protein (8 kDa, Protein from Canis lupus familiaris)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l24 (14 kDa, Protein from Oryctolagus cuniculus)
- P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- P- and e- site trna (Complex from Saccharomyces cerevisiae)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s14 (14 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- El8 (27 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- Signal sequence (hr2) (Complex from Homo sapiens)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- E-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Signal sequence (hr2) (1 kDa, Protein from Homo sapiens)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle subunit srp68 (23 kDa, Protein from Canis lupus familiaris)
- 40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Complex from Homo sapiens)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex with srp. (Complex)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6r6p
Q-score: 0.429
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex (rotated state). (Complex from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Mrna (Cellular component from Homo sapiens)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- El8 (27 kDa, Protein from Oryctolagus cuniculus)
- A/p-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- A/p- and p/e- site trna (Cellular component from Saccharomyces cerevisiae)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- P/e-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex (rotated state). (Complex)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- S29 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (19 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Cellular component from Homo sapiens)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Mrna (3 kDa, RNA from Homo sapiens)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (548 kDa, RNA from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Us14 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l29 (8 kDa, Protein from Oryctolagus cuniculus)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6r7q
Q-score: 0.34
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- El29 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (548 kDa, RNA from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Us19 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- Trna (Cellular component from Saccharomyces cerevisiae)
- Mrna (Cellular component from Homo sapiens)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosome (Complex from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Sec61 (Cellular component from Canis lupus familiaris)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Canis lupus familiaris)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- Messenger rna (1 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit alpha isoform 1 (50 kDa, Protein from Canis lupus familiaris)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l24 (14 kDa, Protein from Oryctolagus cuniculus)
- P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Cellular component from Homo sapiens)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit beta (3 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- El8 (27 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- E-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- El22 (11 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex with sec61. (Complex)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6mtd
Q-score: 0.486
Brown A, Baird MR, Yip MC, Murray J, Shao S
eLife (2018) 7 [ Pubmed: 30355441 DOI: doi:10.7554/eLife.40486 ]
- Ul1 (23 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (19 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El27 (15 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- El37 (10 kDa, Protein from Oryctolagus cuniculus)
- Us19 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Eef2 (93 kDa, Protein from Oryctolagus cuniculus)
- El6 (33 kDa, Protein from Oryctolagus cuniculus)
- El15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Es1 (24 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Us3 (25 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Es6 (27 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (21 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Us4 (21 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- El36 (11 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Serbp1 (3 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- El14 (16 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (548 kDa, RNA from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- El11 (16 kDa, Protein from Oryctolagus cuniculus)
- Rabbit 80s ribosome with eef2 and serbp1 (unrotated state with head swivel) (Complex from Oryctolagus cuniculus)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (15 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Es30 (6 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Es12 (13 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- El22 (11 kDa, Protein from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- Es25 (8 kDa, Protein from Oryctolagus cuniculus)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (48 kDa, RNA from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Brown A, Baird MR, Yip MC, Murray J, Shao S
eLife (2018) 7 [ Pubmed: 30355441 DOI: doi:10.7554/eLife.40486 ]
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Eef2 (94 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es12 (13 kDa, Protein from Oryctolagus cuniculus)
- Us3 (25 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- El27 (15 kDa, Protein from Oryctolagus cuniculus)
- Es25 (8 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (548 kDa, RNA from Oryctolagus cuniculus)
- El15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Es6 (27 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (19 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- El37 (10 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (15 kDa, Protein from Oryctolagus cuniculus)
- Us19 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (48 kDa, RNA from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El36 (11 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- El6 (33 kDa, Protein from Oryctolagus cuniculus)
- Es1 (24 kDa, Protein from Oryctolagus cuniculus)
- Es30 (6 kDa, Protein from Oryctolagus cuniculus)
- El14 (16 kDa, Protein from Oryctolagus cuniculus)
- Us4 (21 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (13 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Rabbit 80s ribosome with eef2 and serbp1 (rotated state) (Complex from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- Serbp1 (6 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- El22 (11 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)