Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7a01
Q-score: 0.37
Abaeva IS, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova TV, Hashem Y, Hellen CUT
Cell Rep (2020) 33 pp. 108476-108476 [ DOI: doi:10.1016/j.celrep.2020.108476 Pubmed: 33296660 ]
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Halastavi arva rna virus (Complex from Halastavi arva RNA virus)
- Uncharacterized protein (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- S5 drbm domain-containing protein (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s_sa_c domain-containing protein (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
- Complex between 80s ribosome and halv igr ires (Complex from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (22 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (8 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us19 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27a (21 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es30 (5 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (580 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- Complex between 80s ribosome and halv igr ires (Complex)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (14 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l6e_n domain-containing protein (4 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el8 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es26 (11 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Internal ribosome entry site (48 kDa, RNA from Halastavi arva RNA virus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_s10 domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s4,40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (14 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6zvk
Q-score: 0.421
Abaeva IS, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova TV, Hashem Y, Hellen CUT
Cell Rep (2020) 33 pp. 108476-108476 [ DOI: doi:10.1016/j.celrep.2020.108476 Pubmed: 33296660 ]
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- S5 drbm domain-containing protein (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s_sa_c domain-containing protein (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (8 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Complex between 870s ribosome and halv igr ires (Complex)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us19 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el28 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es30 (5 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Halv igr ires (Complex from Halastavi arva RNA virus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l6e_n domain-containing protein (4 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el8 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosome (Complex from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es26 (11 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Internal ribosome entry site (48 kDa, RNA from Halastavi arva RNA virus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal_s10 domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6r6p
Q-score: 0.429
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex (rotated state). (Complex)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- A/p-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- El8 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- P/e-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Us14 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Mrna (Cellular component from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (8 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (548 kDa, RNA from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (19 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- A/p- and p/e- site trna (Cellular component from Saccharomyces cerevisiae)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- S29 (6 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex (rotated state). (Complex from Oryctolagus cuniculus)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (13 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Cellular component from Homo sapiens)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Mrna (3 kDa, RNA from Homo sapiens)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6mtd
Q-score: 0.486
Brown A, Baird MR, Yip MC, Murray J, Shao S
eLife (2018) 7 [ DOI: doi:10.7554/eLife.40486 Pubmed: 30355441 ]
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es30 (6 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- Eef2 (93 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (548 kDa, RNA from Oryctolagus cuniculus)
- Es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Us19 (14 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- Us4 (21 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (48 kDa, RNA from Oryctolagus cuniculus)
- Ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- El15 (24 kDa, Protein from Oryctolagus cuniculus)
- Es1 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Us3 (25 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- El22 (11 kDa, Protein from Oryctolagus cuniculus)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- El6 (33 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (15 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Rabbit 80s ribosome with eef2 and serbp1 (unrotated state with head swivel) (Complex from Oryctolagus cuniculus)
- Ul10 (21 kDa, Protein from Oryctolagus cuniculus)
- El36 (11 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul1 (23 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- El37 (10 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (19 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El14 (16 kDa, Protein from Oryctolagus cuniculus)
- Es12 (13 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (13 kDa, Protein from Oryctolagus cuniculus)
- Es6 (27 kDa, Protein from Oryctolagus cuniculus)
- El11 (16 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Serbp1 (3 kDa, Protein from Oryctolagus cuniculus)
- El27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
Structure of the yeast mitochondrial ribosome - Class A
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 5mrc
Q-score: 0.443
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (2017) 355 pp. 528-531 [ Pubmed: 28154081 DOI: doi:10.1126/science.aal2415 ]
- Bl19m (17 kDa, Protein from Baker's yeast)
- Ul2m (43 kDa, Protein from Baker's yeast)
- Us4m (56 kDa, Protein from Baker's yeast)
- Bs16m (13 kDa, Protein from Baker's yeast)
- Ul16m (22 kDa, Protein from Baker's yeast)
- Us12m (13 kDa, Protein from Baker's yeast)
- Bl31m (20 kDa, Protein from Baker's yeast)
- Us17m (27 kDa, Protein from Baker's yeast)
- Bs21m (10 kDa, Protein from Baker's yeast)
- Ul15m (24 kDa, Protein from Baker's yeast)
- Ul23m (24 kDa, Protein from Baker's yeast)
- Bs6m (14 kDa, Protein from Baker's yeast)
- Ul13m (18 kDa, Protein from Baker's yeast)
- Ms29 (45 kDa, Protein from Baker's yeast)
- Ml43 (15 kDa, Protein from Baker's yeast)
- Us13m (13 kDa, Protein from Baker's yeast)
- Bs18m (11 kDa, Protein from Baker's yeast)
- Ms38 (4 kDa, Protein from Baker's yeast)
- Ms26 (26 kDa, Protein from Baker's yeast)
- Us15m (29 kDa, Protein from Baker's yeast)
- Trna (24 kDa, RNA from Baker's yeast)
- Ml50 (30 kDa, Protein from Baker's yeast)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Bl36m (4 kDa, Protein from Baker's yeast)
- Us11m (16 kDa, Protein from Baker's yeast)
- Ms43 (36 kDa, Protein from Baker's yeast)
- Sodium ion (22 Da, Ligand)
- Bl9m (8 kDa, Protein from Baker's yeast)
- Unknown protein sequence 1 (8 kDa, Protein from Baker's yeast)
- Ml41 (14 kDa, Protein from Baker's yeast)
- Us5m (33 kDa, Protein from Baker's yeast)
- Ms44 (39 kDa, Protein from Baker's yeast)
- Ml67 (25 kDa, Protein from Baker's yeast)
- Ul14m (14 kDa, Protein from Baker's yeast)
- Us10m (21 kDa, Protein from Baker's yeast)
- Bl35m (7 kDa, Protein from Baker's yeast)
- Ml40 (13 kDa, Protein from Baker's yeast)
- Unknown protein sequence 2 (12 kDa, Protein from Baker's yeast)
- Bs1m (39 kDa, Protein from Baker's yeast)
- 15s ribosomal rna (528 kDa, RNA from Baker's yeast)
- Us9m (27 kDa, Protein from Baker's yeast)
- Magnesium ion (24 Da, Ligand)
- Ml44 (36 kDa, Protein from Baker's yeast)
- Us19m (9 kDa, Protein from Baker's yeast)
- Ms37 (10 kDa, Protein from Baker's yeast)
- Ul4m (28 kDa, Protein from Baker's yeast)
- Ul30m (9 kDa, Protein from Baker's yeast)
- Ms45 (36 kDa, Protein from Baker's yeast)
- Ml58 (20 kDa, Protein from Baker's yeast)
- Ms23 (27 kDa, Protein from Baker's yeast)
- Bl28m (25 kDa, Protein from Baker's yeast)
- Bl17m (26 kDa, Protein from Baker's yeast)
- Ml49 (12 kDa, Protein from Baker's yeast)
- 21s ribosomal rna (1 MDa, RNA from Baker's yeast)
- Ms35 (32 kDa, Protein from Baker's yeast)
- Ul3m (27 kDa, Protein from Baker's yeast)
- Bl32m (13 kDa, Protein from Baker's yeast)
- Ul29m (26 kDa, Protein from Baker's yeast)
- Ul22m (25 kDa, Protein from Baker's yeast)
- Ml60 (14 kDa, Protein from Baker's yeast)
- Ms47 (51 kDa, Protein from Baker's yeast)
- Us3m (47 kDa, Protein from Baker's yeast)
- Ml59 (18 kDa, Protein from Baker's yeast)
- Ms42 (29 kDa, Protein from Baker's yeast)
- Ml38 (40 kDa, Protein from Baker's yeast)
- Us14m (13 kDa, Protein from Baker's yeast)
- Ul24m (33 kDa, Protein from Baker's yeast)
- Bl33m (7 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- Ul6m (21 kDa, Protein from Baker's yeast)
- Ul5m (31 kDa, Protein from Baker's yeast)
- Ms33 (11 kDa, Protein from Baker's yeast)
- Bl34m (5 kDa, Protein from Baker's yeast)
- Ml46 (32 kDa, Protein from Baker's yeast)
- Ms46 (18 kDa, Protein from Baker's yeast)
- Yeast mitochondrial ribosome - class a (Complex from Saccharomyces cerevisiae)
- Ms41 (11 kDa, Protein from Baker's yeast)
- Bl21m (13 kDa, Protein from Baker's yeast)
- Us2m (29 kDa, Protein from Baker's yeast)
- Bl27m (39 kDa, Protein from Baker's yeast)
- Us7m (18 kDa, Protein from Baker's yeast)
- Us8m (17 kDa, Protein from Baker's yeast)
- Ml57 (23 kDa, Protein from Baker's yeast)
Structure of the yeast mitochondrial ribosome - Class C
Resolution: 4.97 Å
EM Method: Single-particle
Fitted PDBs: 5mrf
Q-score: 0.241
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (2017) 355 pp. 528-531 [ Pubmed: 28154081 DOI: doi:10.1126/science.aal2415 ]
- Yeast mitochondrial ribosome - class c (Complex from Saccharomyces cerevisiae)
- Bs1m (39 kDa, Protein from Saccharomyces cerevisiae)
- Bs16m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ms45 (36 kDa, Protein from Saccharomyces cerevisiae)
- Ul4m (28 kDa, Protein from Saccharomyces cerevisiae)
- Us12m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul16m (22 kDa, Protein from Saccharomyces cerevisiae)
- Ul22m (25 kDa, Protein from Saccharomyces cerevisiae)
- Ms44 (39 kDa, Protein from Saccharomyces cerevisiae)
- Ul14m (14 kDa, Protein from Saccharomyces cerevisiae)
- Ul3m (27 kDa, Protein from Saccharomyces cerevisiae)
- 21s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- Bl31m (20 kDa, Protein from Saccharomyces cerevisiae)
- Us14m (13 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein sequence 2 (12 kDa, Protein from Saccharomyces cerevisiae)
- Bl19m (17 kDa, Protein from Saccharomyces cerevisiae)
- Ml58 (20 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ms41 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ms43 (36 kDa, Protein from Saccharomyces cerevisiae)
- Ms37 (10 kDa, Protein from Saccharomyces cerevisiae)
- Us19m (9 kDa, Protein from Saccharomyces cerevisiae)
- Sodium ion (22 Da, Ligand)
- Ul13m (18 kDa, Protein from Saccharomyces cerevisiae)
- Bl36m (4 kDa, Protein from Saccharomyces cerevisiae)
- Ml60 (14 kDa, Protein from Saccharomyces cerevisiae)
- Ml43 (15 kDa, Protein from Saccharomyces cerevisiae)
- Ml67 (25 kDa, Protein from Saccharomyces cerevisiae)
- Us5m (33 kDa, Protein from Saccharomyces cerevisiae)
- Trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Us2m (29 kDa, Protein from Saccharomyces cerevisiae)
- Ms29 (45 kDa, Protein from Saccharomyces cerevisiae)
- Ul5m (31 kDa, Protein from Saccharomyces cerevisiae)
- Ms35 (32 kDa, Protein from Saccharomyces cerevisiae)
- Us11m (16 kDa, Protein from Saccharomyces cerevisiae)
- Us8m (17 kDa, Protein from Saccharomyces cerevisiae)
- Bl17m (26 kDa, Protein from Saccharomyces cerevisiae)
- Ul29m (26 kDa, Protein from Saccharomyces cerevisiae)
- Bl33m (7 kDa, Protein from Saccharomyces cerevisiae)
- Bs6m (14 kDa, Protein from Saccharomyces cerevisiae)
- Bl21m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul30m (9 kDa, Protein from Saccharomyces cerevisiae)
- Ms26 (26 kDa, Protein from Saccharomyces cerevisiae)
- Ul6m (21 kDa, Protein from Saccharomyces cerevisiae)
- Us7m (18 kDa, Protein from Saccharomyces cerevisiae)
- Us17m (27 kDa, Protein from Saccharomyces cerevisiae)
- Us9m (27 kDa, Protein from Saccharomyces cerevisiae)
- Bl32m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ms47 (51 kDa, Protein from Saccharomyces cerevisiae)
- Ml40 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ml57 (23 kDa, Protein from Saccharomyces cerevisiae)
- Ms23 (27 kDa, Protein from Saccharomyces cerevisiae)
- Ms42 (29 kDa, Protein from Saccharomyces cerevisiae)
- Bl27m (39 kDa, Protein from Saccharomyces cerevisiae)
- Bl34m (5 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein sequence 1 (8 kDa, Protein from Saccharomyces cerevisiae)
- Ul15m (24 kDa, Protein from Saccharomyces cerevisiae)
- Ml59 (18 kDa, Protein from Saccharomyces cerevisiae)
- Ul23m (24 kDa, Protein from Saccharomyces cerevisiae)
- Ml44 (36 kDa, Protein from Saccharomyces cerevisiae)
- Us4m (56 kDa, Protein from Saccharomyces cerevisiae)
- Ul24m (33 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Us10m (21 kDa, Protein from Saccharomyces cerevisiae)
- 15s ribosomal rna (528 kDa, RNA from Saccharomyces cerevisiae)
- Ml46 (32 kDa, Protein from Saccharomyces cerevisiae)
- Bl28m (25 kDa, Protein from Saccharomyces cerevisiae)
- Ms33 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ml49 (12 kDa, Protein from Saccharomyces cerevisiae)
- Ms46 (18 kDa, Protein from Saccharomyces cerevisiae)
- Bs18m (11 kDa, Protein from Saccharomyces cerevisiae)
- Bs21m (10 kDa, Protein from Saccharomyces cerevisiae)
- Ml38 (40 kDa, Protein from Saccharomyces cerevisiae)
- Ml50 (30 kDa, Protein from Saccharomyces cerevisiae)
- Us15m (29 kDa, Protein from Saccharomyces cerevisiae)
- Bl9m (8 kDa, Protein from Saccharomyces cerevisiae)
- Us13m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ms38 (4 kDa, Protein from Saccharomyces cerevisiae)
- Us3m (47 kDa, Protein from Saccharomyces cerevisiae)
- Bl35m (7 kDa, Protein from Saccharomyces cerevisiae)
- Ul2m (43 kDa, Protein from Saccharomyces cerevisiae)
- Ml41 (14 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 5.34 Å
EM Method: Single-particle
Fitted PDBs: 5jbh
Q-score: 0.117
Coureux PD, Lazennec-Schurdevin C, Monestier A, Larquet E, Cladiere L, Klaholz BP, Schmitt E, Mechulam Y
Nat Commun (2016) 7 pp. 13366-13366 [ Pubmed: 27819266 DOI: doi:10.1038/ncomms13366 ]
- 30s ribosomal protein us9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 16s ribosomal rna (492 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein us15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein sx (4 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein us12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Aif2-beta (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein us3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Aif1a (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es4 (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es27 (5 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (8 kDa, RNA from Pyrococcus)
- 30s ribosomal protein es19 (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein ul30 (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (982 kDa, Complex)
- Aif2-alpha (30 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Aif2-gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein es17 (7 kDa, Protein from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- Aif1 (11 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- 30s ribosomal protein us19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us14 (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Escherichia coli)
- 30s ribosomal protein es28 (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Pyrococcus)
- 30s ribosomal protein es6 (14 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein es8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es24 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es27 (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us3 (22 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein el41 (3 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us4 (21 kDa, Protein from Pyrococcus abyssi GE5)
Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 5lzs
Q-score: 0.462
Shao S, Murray J, Brown A, Taunton J, Ramakrishnan V, Hegde RS
Cell (2016) 167 pp. 1229-1240.e15 [ DOI: doi:10.1016/j.cell.2016.10.046 Pubmed: 27863242 ]
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Mrna (3 kDa, RNA from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Elongation factor 1-alpha 1 (50 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Us4 (26 kDa, Protein from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (22 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- (2~{s})-~{n}-[(2~{r})-1-[[(3~{s},6~{s},8~{s},12~{s},13~{r},16~{s},17~{r},20~{s},23~{s})-13-[(2~{s})-butan-2-yl]-20-[(4-methoxyphenyl)methyl]-6,17,21-trimethyl-3-(2-methylpropyl)-12-oxidanyl-2,5,7,10,15,19,22-heptakis(oxidanylidene)-8-propan-2-yl-9,18-dioxa-1,4,14,21-tetrazabicyclo[21.3.0]hexacosan-16-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-~{n}-methyl-1-[(2~{s})-2-oxidanylpropanoyl]pyrrolidine-2-carboxamide (1 kDa, Ligand)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- El34 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Trna (24 kDa, RNA from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- Es10 (18 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (14 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- E-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Affinity-purified 80s ribosome-nascent chain complex stalled with didemnin b and containing aminoacyl-trna and eef1a. (3 MDa, Complex from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (17 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5it9
Q-score: 0.314
Murray J, Savva CG, Shin BS, Dever TE, Ramakrishnan V, Fernandez IS
eLife (2016) 5 [ Pubmed: 27159451 DOI: doi:10.7554/eLife.13567 ]
- Ribosomal protein es27 (8 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es29 (6 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es26 (11 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us10 (12 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us8 (14 kDa, Protein from Kluyveromyces lactis)
- 18s ribosomal rna (573 kDa, RNA from Kluyveromyces lactis)
- Ribosomal protein rack1 (35 kDa, Protein from Kluyveromyces lactis)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us2 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us17 (17 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us4 (20 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us13 (16 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es21 (9 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us9 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es31 (7 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us19 (14 kDa, Protein from Kluyveromyces lactis)
- Cricket paralysis virus ires rna (61 kDa, RNA from Cricket paralysis virus)
- Ribosomal protein es4 (29 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us15 (16 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us5 (23 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es25 (7 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es19 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es7 (21 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us7 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es10 (11 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us14 (13 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es24 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es30 (6 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es6 (25 kDa, Protein from Kluyveromyces lactis)
- Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus ires (2 MDa, Complex from Kluyveromyces lacti)
- Ribosomal protein es28 (7 kDa, Protein from Kluyveromyces lactis)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein es12 (13 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us21 (16 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es8 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es17 (14 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us3 (24 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es1 (24 kDa, Protein from Kluyveromyces lactis)