Rabbit 80S ribosome stalled on a poly(A) tail
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6sgc
Q-score: 0.575
Chandrasekaran V, Juszkiewicz S, Choi J, Puglisi JD, Brown A, Shao S, Ramakrishnan V, Hegde RS
Nat Struct Mol Biol (2019) 26 pp. 1132-1140 [ DOI: doi:10.1038/s41594-019-0331-x Pubmed: 31768042 ]
- Trna (lys3) (24 kDa, RNA from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Rabbit)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Rabbit)
- Ribosomal protein s11 (18 kDa, Protein from Rabbit)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Rabbit)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- Us14 (6 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_s13_n domain-containing protein (17 kDa, Protein from Rabbit)
- Ribosomal protein l12 (17 kDa, Protein from Rabbit)
- Trash domain-containing protein (17 kDa, Protein from Rabbit)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18e/l15p domain-containing protein (16 kDa, Protein from Rabbit)
- Ribosomal protein s5 (22 kDa, Protein from Rabbit)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l7ae domain-containing protein (12 kDa, Protein from Rabbit)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Rabbit)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- Ul29 (14 kDa, Protein from Rabbit)
- Ribosomal protein s16 (16 kDa, Protein from Rabbit)
- Spermidine (145 Da, Ligand)
- Ribosomal protein s28 (7 kDa, Protein from Rabbit)
- Es25 (13 kDa, Protein from Rabbit)
- Polya mrna (Complex from Homo sapiens)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Wd_repeats_region domain-containing protein (35 kDa, Protein from Rabbit)
- 40s ribosomal protein s12 (14 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s3a (30 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Rabbit)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s27a (18 kDa, Protein from Rabbit)
- Us5 (26 kDa, Protein from Rabbit)
- S10_plectin domain-ontaining protein (18 kDa, Protein from Rabbit)
- 40s ribosomal protein s4 (29 kDa, Protein from Rabbit)
- Es13 (17 kDa, Protein from Rabbit)
- 40s ribosomal protein s8 (24 kDa, Protein from Rabbit)
- 40s ribosomal protein s30 (14 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Ribosomal protein (24 kDa, Protein from Rabbit)
- 60s ribosomal protein l36 (12 kDa, Protein from Rabbit)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Rabbit 80s ribosome stalled on polya mrna (4 MDa, Complex)
- Ribosomal protein l26 (17 kDa, Protein from Rabbit)
- Ribosomal protein l11 (20 kDa, Protein from Rabbit)
- Ul3 (46 kDa, Protein from Rabbit)
- El33 (12 kDa, Protein from Rabbit)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Rabbit)
- Ul30 (29 kDa, Protein from Rabbit)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Rabbit)
- Ribosomal protein l8 (28 kDa, Protein from Rabbit)
- El43 (10 kDa, Protein from Rabbit)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal_l28e domain-containing protein (15 kDa, Protein from Rabbit)
- 60s ribosomal protein l6 (33 kDa, Protein from Rabbit)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (28 kDa, Protein from Rabbit)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- El34 (13 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- 40s ribosomal protein s7 (22 kDa, Protein from Rabbit)
- Us19 (17 kDa, Protein from Rabbit)
- Ribosomal protein l23 (14 kDa, Protein from Rabbit)
- Ul6 (21 kDa, Protein from Rabbit)
- Ul22 (21 kDa, Protein from Rabbit)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_s10 domain-containing protein (13 kDa, Protein from Rabbit)
- Poly-lysine nascent chain (2 kDa, Protein from Oryctolagus cuniculus)
- Polya mrna (3 kDa, RNA from Homo sapiens)
- Ribosomal protein l37 (11 kDa, Protein from Rabbit)
- Es17 (15 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein l14 (23 kDa, Protein from Rabbit)
- El39 (6 kDa, Protein from Rabbit)
mt-SSU assemblosome of Trypanosoma brucei
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6sgb
Q-score: 0.439
Saurer M, Ramrath DJF, Niemann M, Calderaro S, Prange C, Mattei S, Scaiola A, Leitner A, Bieri P, Horn EK, Leibundgut M, Boehringer D, Schneider A, Ban N
Science (2019) 365 pp. 1144-1149 [ Pubmed: 31515389 DOI: doi:10.1126/science.aaw5570 ]
- Mt-saf20 (40 kDa, Protein from Trypanosoma brucei brucei)
- Ms22 (73 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf7 (kripp10) (76 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf18 (42 kDa, Protein from Trypanosoma brucei brucei)
- Ms63 (kripp16) (31 kDa, Protein from Trypanosoma brucei brucei)
- Ms58 (35 kDa, Protein from Trypanosoma brucei brucei)
- Unk-j (1 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf8 (76 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf6 (76 kDa, Protein from Trypanosoma brucei brucei)
- Unk-a (4 kDa, Protein from Trypanosoma brucei brucei)
- Bs18m (36 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf32 (16 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf1 (rsm22) (119 kDa, Protein from Trypanosoma brucei brucei)
- Unk-i (2 kDa, Protein from Trypanosoma brucei brucei)
- Ms70 (21 kDa, Protein from Trypanosoma brucei brucei)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Mt-saf15 (53 kDa, Protein from Trypanosoma brucei brucei)
- Ms34 (28 kDa, Protein from Trypanosoma brucei brucei)
- Ms38 (28 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf24 (34 kDa, Protein from Trypanosoma brucei brucei)
- Us8m (32 kDa, Protein from Trypanosoma brucei brucei)
- Unk-d, unk-m, unk-q, unk-f (783 Da, Protein from Trypanosoma brucei brucei)
- Ms68 (26 kDa, Protein from Trypanosoma brucei brucei)
- Ms3m (9 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf21 (39 kDa, Protein from Trypanosoma brucei brucei)
- Us10m (94 kDa, Protein from Trypanosoma brucei brucei)
- Us14m (19 kDa, Protein from Trypanosoma brucei brucei)
- Unk-g (14 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf17 (50 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf14 (53 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Ms69 (21 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf29 (20 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf34 (14 kDa, Protein from Trypanosoma brucei brucei)
- Ms54 (72 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf23 (38 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf28 (21 kDa, Protein from Trypanosoma brucei brucei)
- Ms55 (kripp8) (66 kDa, Protein from Trypanosoma brucei brucei)
- Us19m (28 kDa, Protein from Trypanosoma brucei brucei)
- S-(2-{[n-(2-hydroxy-4-{[hydroxy(oxido)phosphino]oxy}-3,3-dimethylbutanoyl)-beta-alanyl]amino}ethyl) decanethioate (496 Da, Ligand)
- Unk-g (1 kDa, Protein from Trypanosoma brucei brucei)
- Mt-ssu assemblosome (Complex from Trypanosoma brucei brucei)
- Mt-saf12 (kripp18) (65 kDa, Protein from Trypanosoma brucei brucei)
- Ms71 (20 kDa, Protein from Trypanosoma brucei brucei)
- Ms59 (35 kDa, Protein from Trypanosoma brucei brucei)
- Ms62 (kripp14) (32 kDa, Protein from Trypanosoma brucei brucei)
- Unk-c (1 kDa, Protein from Trypanosoma brucei brucei)
- Unk-y (39 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf25 (29 kDa, Protein from Trypanosoma brucei brucei)
- Ms49 (137 kDa, Protein from Trypanosoma brucei brucei)
- 9s rrna (198 kDa, RNA from Trypanosoma brucei brucei)
- Mt-saf16 (50 kDa, Protein from Trypanosoma brucei brucei)
- Bs16m (22 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf31 (17 kDa, Protein from Trypanosoma brucei brucei)
- Unk-k (2 kDa, Protein from Trypanosoma brucei brucei)
- Us15m (50 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf5 (86 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mt-saf3 (106 kDa, Protein from Trypanosoma brucei brucei)
- Us11m (37 kDa, Protein from Trypanosoma brucei brucei)
- Unk-e, unk-p (3 kDa, Protein from Trypanosoma brucei brucei)
- Unk-x (9 kDa, Protein from Trypanosoma brucei brucei)
- Unk-j (1 kDa, Protein from Trypanosoma brucei brucei)
- Phosphate ion (94 Da, Ligand)
- Unk-b, unk-k (2 kDa, Protein from Trypanosoma brucei brucei)
- Ms50 (131 kDa, Protein from Trypanosoma brucei brucei)
- Ms67 (30 kDa, Protein from Trypanosoma brucei brucei)
- Ms26 (51 kDa, Protein from Trypanosoma brucei brucei)
- Ms41 (22 kDa, Protein from Trypanosoma brucei brucei)
- Unk-l (1 kDa, Protein from Trypanosoma brucei brucei)
- Ms73 (11 kDa, Protein from Trypanosoma brucei brucei)
- Us17m (39 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf11 (64 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf19 (41 kDa, Protein from Trypanosoma brucei brucei)
- Ms51 (kripp1) (95 kDa, Protein from Trypanosoma brucei brucei)
- Unk-d (5 kDa, Protein from Trypanosoma brucei brucei)
- Unk-l (1 kDa, Protein from Trypanosoma brucei brucei)
- Ms65 (30 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf33 (16 kDa, Protein from Trypanosoma brucei brucei)
- Ms33 (21 kDa, Protein from Trypanosoma brucei brucei)
- Unk-o (2 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf10 (69 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf2 (kripp2) (116 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf13 (63 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf22 (kripp17) (39 kDa, Protein from Trypanosoma brucei brucei)
- Unk-h (443 Da, Protein from Trypanosoma brucei brucei)
- Bs6m (18 kDa, Protein from Trypanosoma brucei brucei)
- Us5m (50 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf27 (kripp11) (26 kDa, Protein from Trypanosoma brucei brucei)
- Unk-e (2 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf4 (91 kDa, Protein from Trypanosoma brucei brucei)
- Unk-i, unk-n (698 Da, Protein from Trypanosoma brucei brucei)
- Ms35 (98 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf30 (19 kDa, Protein from Trypanosoma brucei brucei)
- Ms56 (47 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf9 (69 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Ms57 (45 kDa, Protein from Trypanosoma brucei brucei)
- Ms29 (57 kDa, Protein from Trypanosoma brucei brucei)
- Unk-c (869 Da, Protein from Trypanosoma brucei brucei)
- Unk-a (1 kDa, Protein from Trypanosoma brucei brucei)
- Unk-f, unk-m (954 Da, Protein from Trypanosoma brucei brucei)
- Ms23 (35 kDa, Protein from Trypanosoma brucei brucei)
- Ms53 (75 kDa, Protein from Trypanosoma brucei brucei)
- Ms52 (84 kDa, Protein from Trypanosoma brucei brucei)
- Ms72 (19 kDa, Protein from Trypanosoma brucei brucei)
- Unk-b (3 kDa, Protein from Trypanosoma brucei brucei)
- Unk-h (21 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Mt-saf26 (30 kDa, Protein from Trypanosoma brucei brucei)
- Us9m (50 kDa, Protein from Trypanosoma brucei brucei)
Head domain of the mt-SSU assemblosome from Trypanosoma brucei
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6sg9
Q-score: 0.461
Saurer M, Ramrath DJF, Niemann M, Calderaro S, Prange C, Mattei S, Scaiola A, Leitner A, Bieri P, Horn EK, Leibundgut M, Boehringer D, Schneider A, Ban N
Science (2019) 365 pp. 1144-1149 [ Pubmed: 31515389 DOI: doi:10.1126/science.aaw5570 ]
- Us3m (9 kDa, Protein from Trypanosoma brucei brucei)
- Ms58 (35 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf18 (42 kDa, Protein from Trypanosoma brucei brucei)
- Us5m (50 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf20 (40 kDa, Protein from Trypanosoma brucei brucei)
- Unk-a (5 kDa, Protein from Trypanosoma brucei brucei)
- Us10m (94 kDa, Protein from Trypanosoma brucei brucei)
- Us14m (19 kDa, Protein from Trypanosoma brucei brucei)
- Unk-e (2 kDa, Protein from Trypanosoma brucei brucei)
- Unk-g (14 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf4 (91 kDa, Protein from Trypanosoma brucei brucei)
- Unk-k (2 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Unk-j (1 kDa, Protein from Trypanosoma brucei brucei)
- Us11m (37 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf17 (50 kDa, Protein from Trypanosoma brucei brucei)
- Unk-x (9 kDa, Protein from Trypanosoma brucei brucei)
- Ms35 (98 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf14 (53 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Mt-saf30 (19 kDa, Protein from Trypanosoma brucei brucei)
- Ms50 (131 kDa, Protein from Trypanosoma brucei brucei)
- Ms67 (30 kDa, Protein from Trypanosoma brucei brucei)
- Ms69 (21 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf19 (41 kDa, Protein from Trypanosoma brucei brucei )
- Unk-f (783 Da, Protein from Trypanosoma brucei brucei)
- Unk-m (954 Da, Protein from Trypanosoma brucei brucei)
- Ms54 (72 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf1 (rsm22) (119 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf28 (21 kDa, Protein from Trypanosoma brucei brucei)
- Ms55 (kripp8) (66 kDa, Protein from Trypanosoma brucei brucei)
- Unk-i (2 kDa, Protein from Trypanosoma brucei brucei)
- Us19m (28 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Ms57 (45 kDa, Protein from Trypanosoma brucei brucei)
- Ms29 (57 kDa, Protein from Trypanosoma brucei brucei)
- Unk-d (5 kDa, Protein from Trypanosoma brucei brucei)
- Unk-l (1 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf34 (14 kDa, Protein from Trypanosoma brucei brucei )
- Mt-saf12 (kripp18) (65 kDa, Protein from Trypanosoma brucei brucei)
- 9s rrna (256 kDa, RNA from Trypanosoma brucei brucei)
- Ms70 (21 kDa, Protein from Trypanosoma brucei brucei)
- Ms71 (20 kDa, Protein from Trypanosoma brucei brucei)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Ms33 (21 kDa, Protein from Trypanosoma brucei brucei)
- Cryo-em structure of the head domain of the mt-ssu assemblosome from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Mt-saf15 (53 kDa, Protein from Trypanosoma brucei brucei)
- Unk-c (1 kDa, Protein from Trypanosoma brucei brucei)
- Ms38 (28 kDa, Protein from Trypanosoma brucei brucei)
- Ms53 (75 kDa, Protein from Trypanosoma brucei brucei)
- Ms52 (84 kDa, Protein from Trypanosoma brucei brucei)
- Ms72 (19 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf25 (29 kDa, Protein from Trypanosoma brucei brucei)
- Ms49 (137 kDa, Protein from Trypanosoma brucei brucei)
- Unk-b (3 kDa, Protein from Trypanosoma brucei brucei)
- Unk-h (21 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Mt-saf16 (50 kDa, Protein from Trypanosoma brucei brucei)
- Us9m (50 kDa, Protein from Trypanosoma brucei brucei)
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6r5q
Q-score: 0.486
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (23 kDa, Protein from Oryctolagus cuniculus)
- El29 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (548 kDa, RNA from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- Mrna (Complex from Homo sapiens)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Mrna (1 kDa, RNA from Homo sapiens)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us17 (14 kDa, Protein from Oryctolagus cuniculus)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ribosome (Complex from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l24 (14 kDa, Protein from Oryctolagus cuniculus)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Trna (Complex from Saccharomyces cerevisiae)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex (post-state). (Complex)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- E-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Complex from Homo sapiens)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- El22 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- El8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6r6g
Q-score: 0.358
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
- 60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- El29 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (548 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Us19 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Srp (Complex from Canis lupus familiaris)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 54 kda protein (47 kDa, Protein from Canis lupus familiaris)
- 7s rna (66 kDa, RNA from Canis lupus familiaris)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Mrna (1 kDa, RNA from Homo sapiens)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s20 (11 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 14 kda protein (10 kDa, Protein from Canis lupus familiaris)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused nascent chain complex with srp. (Complex from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (21 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Mrna encoding xbp1u (Complex from Homo sapiens)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (11 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle subunit srp19 (12 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 9 kda protein (8 kDa, Protein from Canis lupus familiaris)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l24 (14 kDa, Protein from Oryctolagus cuniculus)
- P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- P- and e- site trna (Complex from Saccharomyces cerevisiae)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s14 (14 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- El8 (27 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- Signal sequence (hr2) (Complex from Homo sapiens)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- E-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Signal sequence (hr2) (1 kDa, Protein from Homo sapiens)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle subunit srp68 (23 kDa, Protein from Canis lupus familiaris)
- 40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Complex from Homo sapiens)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex with srp. (Complex)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6r6p
Q-score: 0.429
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex (rotated state). (Complex from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Mrna (Cellular component from Homo sapiens)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- El8 (27 kDa, Protein from Oryctolagus cuniculus)
- A/p-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- A/p- and p/e- site trna (Cellular component from Saccharomyces cerevisiae)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- P/e-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex (rotated state). (Complex)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- S29 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (19 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Cellular component from Homo sapiens)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Mrna (3 kDa, RNA from Homo sapiens)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (548 kDa, RNA from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Us14 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l29 (8 kDa, Protein from Oryctolagus cuniculus)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6r7q
Q-score: 0.34
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- El29 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (548 kDa, RNA from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Us19 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- Trna (Cellular component from Saccharomyces cerevisiae)
- Mrna (Cellular component from Homo sapiens)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosome (Complex from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Sec61 (Cellular component from Canis lupus familiaris)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Canis lupus familiaris)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- Messenger rna (1 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit alpha isoform 1 (50 kDa, Protein from Canis lupus familiaris)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l24 (14 kDa, Protein from Oryctolagus cuniculus)
- P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Cellular component from Homo sapiens)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit beta (3 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- El8 (27 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- E-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- El22 (11 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex with sec61. (Complex)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6rm3
Q-score: 0.493
Barandun J, Hunziker M, Vossbrinck CR, Klinge S
Nat Microbiol (2019) 4 pp. 1798-1804 [ Pubmed: 31332387 DOI: doi:10.1038/s41564-019-0514-6 ]
- Ul18 (34 kDa, Protein from Vairimorpha necatrix)
- Ul2 (26 kDa, Protein from Vairimorpha necatrix)
- Mdf2 (19 kDa, Protein from Vairimorpha necatrix)
- El27 (14 kDa, Protein from Vairimorpha necatrix)
- El8 (23 kDa, Protein from Vairimorpha necatrix)
- Es19 (15 kDa, Protein from Vairimorpha necatrix)
- Es12 (14 kDa, Protein from Vairimorpha necatrix)
- Es28 (7 kDa, Protein from Vairimorpha necatrix)
- Ul15 (17 kDa, Protein from Vairimorpha necatrix)
- El20 (20 kDa, Protein from Vairimorpha necatrix)
- El18 (21 kDa, Protein from Vairimorpha necatrix)
- Rack1 (36 kDa, Protein from Vairimorpha necatrix)
- El39 (6 kDa, Protein from Vairimorpha necatrix)
- El6 (20 kDa, Protein from Vairimorpha necatrix)
- El33 (11 kDa, Protein from Vairimorpha necatrix)
- Us15 (17 kDa, Protein from Vairimorpha necatrix)
- Es21 (7 kDa, Protein from Vairimorpha necatrix)
- El19 (20 kDa, Protein from Vairimorpha necatrix)
- Es30 (6 kDa, Protein from Vairimorpha necatrix)
- 16s rrna (401 kDa, RNA from Vairimorpha necatrix)
- 23s rrna (799 kDa, RNA from Vairimorpha necatrix)
- Msl1 (8 kDa, Protein from Vairimorpha necatrix)
- Microsporidian ribosome (Complex from Vairimorpha necatrix)
- El31 (12 kDa, Protein from Vairimorpha necatrix)
- El21 (18 kDa, Protein from Vairimorpha necatrix)
- Zinc ion (65 Da, Ligand)
- Us4 (21 kDa, Protein from Vairimorpha necatrix)
- Es25 (13 kDa, Protein from Vairimorpha necatrix)
- Us14 (7 kDa, Protein from Vairimorpha necatrix)
- Ul13 (22 kDa, Protein from Vairimorpha necatrix)
- Ul29 (14 kDa, Protein from Vairimorpha necatrix)
- Ul16 (24 kDa, Protein from Vairimorpha necatrix)
- Us8 (14 kDa, Protein from Vairimorpha necatrix)
- El13 (18 kDa, Protein from Vairimorpha necatrix)
- Es6 (24 kDa, Protein from Vairimorpha necatrix)
- El15 (24 kDa, Protein from Vairimorpha necatrix)
- Ul14 (16 kDa, Protein from Vairimorpha necatrix)
- Es31 (17 kDa, Protein from Vairimorpha necatrix)
- El43 (9 kDa, Protein from Vairimorpha necatrix)
- El37 (10 kDa, Protein from Vairimorpha necatrix)
- Us9 (17 kDa, Protein from Vairimorpha necatrix)
- Es17 (13 kDa, Protein from Vairimorpha necatrix)
- El24 (10 kDa, Protein from Vairimorpha necatrix)
- Ul4 (37 kDa, Protein from Vairimorpha necatrix)
- Us3 (23 kDa, Protein from Vairimorpha necatrix)
- Es24 (15 kDa, Protein from Vairimorpha necatrix)
- Es10 (11 kDa, Protein from Vairimorpha necatrix)
- Us5 (25 kDa, Protein from Vairimorpha necatrix)
- El34 (12 kDa, Protein from Vairimorpha necatrix)
- Us17 (18 kDa, Protein from Vairimorpha necatrix)
- Ul3 (43 kDa, Protein from Vairimorpha necatrix)
- El22 (12 kDa, Protein from Vairimorpha necatrix)
- Ul22 (19 kDa, Protein from Vairimorpha necatrix)
- Us10 (11 kDa, Protein from Vairimorpha necatrix)
- Us12 (15 kDa, Protein from Vairimorpha necatrix)
- Es26 (12 kDa, Protein from Vairimorpha necatrix)
- Es1 (26 kDa, Protein from Vairimorpha necatrix)
- El36 (11 kDa, Protein from Vairimorpha necatrix)
- Us7 (20 kDa, Protein from Vairimorpha necatrix)
- Es27 (10 kDa, Protein from Vairimorpha necatrix)
- Us13 (18 kDa, Protein from Vairimorpha necatrix)
- El30 (11 kDa, Protein from Vairimorpha necatrix)
- Es7 (18 kDa, Protein from Vairimorpha necatrix)
- Us19 (16 kDa, Protein from Vairimorpha necatrix)
- Ul23 (11 kDa, Protein from Vairimorpha necatrix)
- Ul6 (21 kDa, Protein from Vairimorpha necatrix)
- 5s rrna (38 kDa, RNA from Vairimorpha necatrix)
- El29 (6 kDa, Protein from Vairimorpha necatrix)
- Us2 (29 kDa, Protein from Vairimorpha necatrix)
- El14 (11 kDa, Protein from Vairimorpha necatrix)
- Ul30 (27 kDa, Protein from Vairimorpha necatrix)
- Es4 (29 kDa, Protein from Vairimorpha necatrix)
- Us11 (14 kDa, Protein from Vairimorpha necatrix)
- Ul24 (16 kDa, Protein from Vairimorpha necatrix)
- Es8 (18 kDa, Protein from Vairimorpha necatrix)
- Mdf1 (19 kDa, Protein from Vairimorpha necatrix)
- El40 (14 kDa, Protein from Vairimorpha necatrix)
- El42 (12 kDa, Protein from Vairimorpha necatrix)
- Magnesium ion (24 Da, Ligand)
- El32 (16 kDa, Protein from Vairimorpha necatrix)
- Ul5 (19 kDa, Protein from Vairimorpha necatrix)