Structure of the mitochondrial ribosome from Polytomella magna
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8a22
Q-score: 0.438
Tobiasson V, Berzina I, Amunts A
Nat Commun (2022) 13 pp. 6132-6132 [ DOI: doi:10.1038/s41467-022-33582-5 Pubmed: 36253367 ]
- Us3m-2 (fragment) (12 kDa, Protein from Polytomella magna)
- Ml121 (27 kDa, Protein from Polytomella magna)
- Mtlsu-2 (26 kDa, RNA from Polytomella magna)
- Mtlsu-6 (42 kDa, RNA from Polytomella magna)
- Ms111 (17 kDa, Protein from Polytomella magna)
- Ms113 (7 kDa, Protein from Polytomella magna)
- Mtssu-4 (112 kDa, RNA from Polytomella magna)
- Ul14m (13 kDa, Protein from Polytomella magna)
- Ul22m (21 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Ml105 (15 kDa, Protein from Polytomella magna)
- Ul6m (27 kDa, Protein from Polytomella magna)
- Potassium ion (39 Da, Ligand)
- Ml128 (2 kDa, Protein from Polytomella magna)
- Mtlsu-4 (23 kDa, RNA from Polytomella magna)
- Ms23 (19 kDa, Protein from Polytomella magna)
- Mtssu-1 (32 kDa, RNA from Polytomella magna)
- Ml46 (20 kDa, Protein from Polytomella magna)
- Us4m-2 (fragment) (20 kDa, Protein from Polytomella magna)
- Bl33m (5 kDa, Protein from Polytomella magna)
- Ul16m (19 kDa, Protein from Polytomella magna)
- Ms35 (19 kDa, Protein from Polytomella magna)
- Ml122 (7 kDa, Protein from Polytomella magna)
- Ml123 (45 kDa, Protein from Polytomella magna)
- Ul30m (20 kDa, Protein from Polytomella magna)
- Ml40 (10 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Us13m (12 kDa, Protein from Polytomella magna)
- Ms116 (10 kDa, Protein from Polytomella magna)
- Ml87 (16 kDa, Protein from Polytomella magna)
- Ms33 (9 kDa, Protein from Polytomella magna)
- Ml64 (14 kDa, Protein from Polytomella magna)
- Ms108 (5 kDa, Protein from Polytomella magna)
- Bl21m (22 kDa, Protein from Polytomella magna)
- Us14m (13 kDa, Protein from Polytomella magna)
- Zinc ion (65 Da, Ligand)
- Ml43 (14 kDa, Protein from Polytomella magna)
- Ml127 (16 kDa, Protein from Polytomella magna)
- Us9m (32 kDa, Protein from Polytomella magna)
- Us8m (43 kDa, Protein from Polytomella magna)
- Ml118 (40 kDa, Protein from Polytomella magna)
- Us7m-2 (fragment) (9 kDa, Protein from Polytomella magna)
- Ml129 (8 kDa, Protein from Polytomella magna)
- Ul18m (12 kDa, Protein from Polytomella magna)
- Ml125 (22 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Bs18m (10 kDa, Protein from Polytomella magna)
- Mt-5s (22 kDa, RNA from Polytomella magna)
- Us3m (32 kDa, Protein from Polytomella magna)
- Bl31m (8 kDa, Protein from Polytomella magna)
- Us17m (15 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Unknown (3 kDa, Protein from Polytomella magna)
- Us15m (18 kDa, Protein from Polytomella magna)
- Us2m (26 kDa, Protein from Polytomella magna)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Mtlsu-1 (35 kDa, RNA from Polytomella magna)
- Us10m (45 kDa, Protein from Polytomella magna)
- Ms31 (66 kDa, Protein from Polytomella magna)
- Ms29 (39 kDa, Protein from Polytomella magna)
- Bl34m (6 kDa, Protein from Polytomella magna)
- Unknown (783 Da, Protein from Polytomella magna)
- Ml120 (22 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Ul9m (6 kDa, Protein from Polytomella magna)
- Ms38 (4 kDa, Protein from Polytomella magna)
- Ms115 (40 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Ms34 (14 kDa, Protein from Polytomella magna)
- Bl24m (13 kDa, Protein from Polytomella magna)
- Ul23m (18 kDa, Protein from Polytomella magna)
- Ul2m (33 kDa, Protein from Polytomella magna)
- Bl28m (15 kDa, Protein from Polytomella magna)
- Bs21m (8 kDa, Protein from Polytomella magna)
- Ul5m (21 kDa, Protein from Polytomella magna)
- Ml124 (52 kDa, Protein from Polytomella magna)
- Ul15m (22 kDa, Protein from Polytomella magna)
- Bs19m (10 kDa, Protein from Polytomella magna)
- Ul3m (34 kDa, Protein from Polytomella magna)
- Ul4m (33 kDa, Protein from Polytomella magna)
- Mtssu-2 (68 kDa, RNA from Polytomella magna)
- Us12m (13 kDa, Protein from Polytomella magna)
- Ms114 (15 kDa, Protein from Polytomella magna)
- Mtlsu-8 (112 kDa, RNA from Polytomella magna)
- Mitochondrial ribosome from polytomella magna (Complex from Polytomella magna)
- Bl19m (19 kDa, Protein from Polytomella magna)
- Bl27m (16 kDa, Protein from Polytomella magna)
- Ul13m (21 kDa, Protein from Polytomella magna)
- Bl35m (16 kDa, Protein from Polytomella magna)
- Us5m (25 kDa, Protein from Polytomella magna)
- Mtlsu-5 (45 kDa, RNA from Polytomella magna)
- Us7m (12 kDa, Protein from Polytomella magna)
- Bl20m (13 kDa, Protein from Polytomella magna)
- Us4m (25 kDa, Protein from Polytomella magna)
- Unknown (954 Da, Protein from Polytomella magna)
- Ms37 (9 kDa, Protein from Polytomella magna)
- Us6m (13 kDa, Protein from Polytomella magna)
- Bs16m (14 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Bl17m (20 kDa, Protein from Polytomella magna)
- Ml63 (7 kDa, Protein from Polytomella magna)
- Ms107 (42 kDa, Protein from Polytomella magna)
- Us11m (12 kDa, Protein from Polytomella magna)
- Water (18 Da, Ligand)
- Mtssu-3 (122 kDa, RNA from Polytomella magna)
- Ml126 (44 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Bl36m (5 kDa, Protein from Polytomella magna)
- Ul29m (14 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Bl31m (6 kDa, Protein from Polytomella magna)
- Bl25m (28 kDa, Protein from Polytomella magna)
- Mtlsu-3 (67 kDa, RNA from Polytomella magna)
- Ms112 (7 kDa, Protein from Polytomella magna)
- Mtlsu-7 (185 kDa, RNA from Polytomella magna)
- Ms106 (18 kDa, Protein from Polytomella magna)
- Ml41 (10 kDa, Protein from Polytomella magna)
- Ms26 (19 kDa, Protein from Polytomella magna)
- Bs1m (27 kDa, Protein from Polytomella magna)
- Ms45 (30 kDa, Protein from Polytomella magna)
- Magnesium ion (24 Da, Ligand)
- Ms110 (11 kDa, Protein from Polytomella magna)
- Ms109 (18 kDa, Protein from Polytomella magna)
Structure of the mitochondrial ribosome from Polytomella magna with tRNA bound to the P site
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8apn
Q-score: 0.399
Tobiasson V, Berzina I, Amunts A
Nat Commun (2022) 13 pp. 6132-6132 [ DOI: doi:10.1038/s41467-022-33582-5 Pubmed: 36253367 ]
- Ml121 (27 kDa, Protein from Polytomella magna)
- Mtlsu-2 (26 kDa, RNA from Polytomella magna)
- Ms111 (17 kDa, Protein from Polytomella magna)
- Ms113 (7 kDa, Protein from Polytomella magna)
- Ul22m (21 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Ul6m (27 kDa, Protein from Polytomella magna)
- Potassium ion (39 Da, Ligand)
- Ml128 (2 kDa, Protein from Polytomella magna)
- Mtlsu-4 (23 kDa, RNA from Polytomella magna)
- Ms23 (19 kDa, Protein from Polytomella magna)
- Mtssu-1 (32 kDa, RNA from Polytomella magna)
- Ml46 (20 kDa, Protein from Polytomella magna)
- Mitochondrial ribosome from polytomella magna in complex with p-site trna as well as mrna (Complex from Polytomella magna)
- Bl33m (5 kDa, Protein from Polytomella magna)
- Ul16m (19 kDa, Protein from Polytomella magna)
- Ms35 (19 kDa, Protein from Polytomella magna)
- Ml122 (7 kDa, Protein from Polytomella magna)
- Ml123 (45 kDa, Protein from Polytomella magna)
- Ul30m (20 kDa, Protein from Polytomella magna)
- Ml40 (10 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Us13m (12 kDa, Protein from Polytomella magna)
- P-site trna (23 kDa, RNA from Polytomella magna)
- Hypothetical protein (13 kDa, Protein from Polytomella magna)
- Ms116 (10 kDa, Protein from Polytomella magna)
- Ml87 (16 kDa, Protein from Polytomella magna)
- Ms33 (9 kDa, Protein from Polytomella magna)
- Ml64 (14 kDa, Protein from Polytomella magna)
- Ms108 (5 kDa, Protein from Polytomella magna)
- Bl21m (22 kDa, Protein from Polytomella magna)
- Us14m (13 kDa, Protein from Polytomella magna)
- Zinc ion (65 Da, Ligand)
- Ml43 (14 kDa, Protein from Polytomella magna)
- Ml127 (16 kDa, Protein from Polytomella magna)
- Us9m (32 kDa, Protein from Polytomella magna)
- Us8m (43 kDa, Protein from Polytomella magna)
- Ml118 (40 kDa, Protein from Polytomella magna)
- Ml129 (8 kDa, Protein from Polytomella magna)
- Ul18m (12 kDa, Protein from Polytomella magna)
- Ml125 (22 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Bs18m (10 kDa, Protein from Polytomella magna)
- Mtssu-4 (108 kDa, RNA from Polytomella magna)
- Mt-5s (22 kDa, RNA from Polytomella magna)
- Us4m-2 (20 kDa, Protein from Polytomella magna)
- Us3m (32 kDa, Protein from Polytomella magna)
- Bl31m (8 kDa, Protein from Polytomella magna)
- Us17m (15 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Mtlsu-5 (43 kDa, RNA from Polytomella magna)
- Unknown (3 kDa, Protein from Polytomella magna)
- Us15m (18 kDa, Protein from Polytomella magna)
- Us2m (26 kDa, Protein from Polytomella magna)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Mtlsu-1 (35 kDa, RNA from Polytomella magna)
- Us10m (45 kDa, Protein from Polytomella magna)
- Ms31 (66 kDa, Protein from Polytomella magna)
- Ms29 (39 kDa, Protein from Polytomella magna)
- Bl34m (6 kDa, Protein from Polytomella magna)
- Bl32m (6 kDa, Protein from Polytomella magna)
- Mtssu-2 (67 kDa, RNA from Polytomella magna)
- Us7m-2 (9 kDa, Protein from Polytomella magna)
- Unknown (783 Da, Protein from Polytomella magna)
- Ml120 (22 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Ul9m (6 kDa, Protein from Polytomella magna)
- Ms38 (4 kDa, Protein from Polytomella magna)
- Ms115 (40 kDa, Protein from Polytomella magna)
- Ms34 (14 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Bl24m (13 kDa, Protein from Polytomella magna)
- Ul23m (18 kDa, Protein from Polytomella magna)
- Ul2m (33 kDa, Protein from Polytomella magna)
- Bl28m (15 kDa, Protein from Polytomella magna)
- Bs21m (8 kDa, Protein from Polytomella magna)
- Ul5m (21 kDa, Protein from Polytomella magna)
- Ml124 (52 kDa, Protein from Polytomella magna)
- Ul15m (22 kDa, Protein from Polytomella magna)
- Bs19m (10 kDa, Protein from Polytomella magna)
- Ul3m (34 kDa, Protein from Polytomella magna)
- Ul4m (33 kDa, Protein from Polytomella magna)
- Mtlsu-3 (66 kDa, RNA from Polytomella magna)
- Mtlsu-6 (35 kDa, RNA from Polytomella magna)
- Us12m (13 kDa, Protein from Polytomella magna)
- Ms114 (15 kDa, Protein from Polytomella magna)
- Mtlsu-8 (112 kDa, RNA from Polytomella magna)
- Ml105 (15 kDa, Protein from Polytomella magna)
- Bl19m (19 kDa, Protein from Polytomella magna)
- Mrna (1 kDa, RNA from Polytomella magna)
- Bl27m (16 kDa, Protein from Polytomella magna)
- Ul13m (21 kDa, Protein from Polytomella magna)
- Bl35m (16 kDa, Protein from Polytomella magna)
- Us5m (25 kDa, Protein from Polytomella magna)
- Us7m (12 kDa, Protein from Polytomella magna)
- Bl20m (13 kDa, Protein from Polytomella magna)
- Mtlsu-7 (171 kDa, RNA from Polytomella magna)
- Us4m (25 kDa, Protein from Polytomella magna)
- Unknown (954 Da, Protein from Polytomella magna)
- Ms37 (9 kDa, Protein from Polytomella magna)
- Us6m (13 kDa, Protein from Polytomella magna)
- Us3m-2 (12 kDa, Protein from Polytomella magna)
- Bs16m (14 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Bl17m (20 kDa, Protein from Polytomella magna)
- Ml63 (7 kDa, Protein from Polytomella magna)
- Ms107 (42 kDa, Protein from Polytomella magna)
- Ml116 (43 kDa, Protein from Polytomella magna)
- Us11m (12 kDa, Protein from Polytomella magna)
- Unknown (5 kDa, Protein from Polytomella magna)
- Water (18 Da, Ligand)
- Mtssu-3 (122 kDa, RNA from Polytomella magna)
- Ml126 (44 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Bl36m (5 kDa, Protein from Polytomella magna)
- Ul29m (14 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Bl25m (28 kDa, Protein from Polytomella magna)
- Ms112 (7 kDa, Protein from Polytomella magna)
- Ms106 (18 kDa, Protein from Polytomella magna)
- Ml41 (10 kDa, Protein from Polytomella magna)
- Ms26 (19 kDa, Protein from Polytomella magna)
- Bs1m (27 kDa, Protein from Polytomella magna)
- Ms45 (30 kDa, Protein from Polytomella magna)
- Magnesium ion (24 Da, Ligand)
- Ms110 (11 kDa, Protein from Polytomella magna)
- Ms109 (18 kDa, Protein from Polytomella magna)
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7zjw
Q-score: 0.514
Hilal T, Killam BY, Grozdanovic M, Dobosz-Bartoszek M, Loerke J, Burger J, Mielke T, Copeland PR, Simonovic M, Spahn CMT
Science (2022) 376 pp. 1338-1343 [ Pubmed: 35709277 DOI: doi:10.1126/science.abg3875 ]
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es10 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein us9 (19 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (275 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el31 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Eefsec (67 kDa, Protein from Homo sapiens)
- 60s ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- Secis binding protein 2 (95 kDa, Protein from Homo sapiens)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Sodium ion (22 Da, Ligand)
- Human ser-trna-sec (28 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (Complex from Rattus norvegicus)
- Ser-trna-sec (Complex from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (Complex from Cricket paralysis virus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- 80s-selenosome (3 MDa, Complex)
- 60s ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- Serine (105 Da, Ligand)
- 40s ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el24 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (345 kDa, RNA from Cricket paralysis virus)
- 60s ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Water (18 Da, Ligand)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- Eefsec and secis binding protein 2 (Complex from Homo sapiens)
- 60s ribosomal protein el33 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el21 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
Specific features and methylation sites of a plant 80S ribosome
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 7qiz
Q-score: 0.666
Cottilli P, Itoh Y, Nobe Y, Petrov AS, Lison P, Taoka M, Amunts A
Plant Commun. (2022) 3 pp. 100342-100342 [ Pubmed: 35643637 DOI: doi:10.1016/j.xplc.2022.100342 ]
- Ribosomal_l28e domain-containing protein (16 kDa, Protein from Solanum lycopersicum)
- Kh type-2 domain-containing protein (26 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el39 (6 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s15a-1 (14 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein sa (32 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Solanum lycopersicum)
- Kow domain-containing protein (16 kDa, Protein from Solanum lycopersicum)
- Potassium ion (39 Da, Ligand)
- 80s ribosome (Complex from Solanum lycopersicum)
- 60s ribosomal protein el22 (13 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l3 (44 kDa, Protein from Solanum lycopersicum)
- Ribosomal_s17_n domain-containing protein (17 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s7 (22 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein ul5 (20 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l6e_n domain-containing protein (25 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s3a (29 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l29 (6 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l18e/l15p domain-containing protein (20 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s25 (11 kDa, Protein from Solanum lycopersicum)
- Spermidine (145 Da, Ligand)
- 60s ribosomal protein l8 (28 kDa, Protein from Solanum lycopersicum)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein es19 (16 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l36 (12 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l41 (3 kDa, Protein from Solanum lycopersicum)
- Spermine (202 Da, Ligand)
- 40s ribosomal protein s17 (16 kDa, Protein from Solanum lycopersicum)
- S5 drbm domain-containing protein (30 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein us14 (6 kDa, Protein from Solanum lycopersicum)
- Trash domain-containing protein (18 kDa, Protein from Solanum lycopersicum)
- 40s body ribosomal protein us4 (23 kDa, Protein from Solanum lycopersicum)
- Ubiquitin (14 kDa, Protein from Solanum lycopersicum)
- 1,4-diaminobutane (88 Da, Ligand)
- 18s (583 kDa, RNA from Solanum lycopersicum)
- Beta-d-glucopyranose (180 Da, Ligand)
- 60s ribosomal protein el43 (10 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l13 (23 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el42 (12 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l19 (24 kDa, Protein from Solanum lycopersicum)
- Ribosomal_s10 domain-containing protein (13 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el21 (18 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l18a (21 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l38 (8 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s30 (6 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l14e domain-containing protein (15 kDa, Protein from Solanum lycopersicum)
- 5.8s rrna (53 kDa, RNA from Solanum lycopersicum)
- Mrna (895 Da, RNA from Solanum lycopersicum)
- 5s rrna (38 kDa, RNA from Solanum lycopersicum)
- 25s rrna (1 MDa, RNA from Solanum lycopersicum)
- 40s ribosomal protein s4 (29 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein us13 (17 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l37 (10 kDa, Protein from Solanum lycopersicum)
- 40s body ribosomal protein us12 (15 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l15 (24 kDa, Protein from Solanum lycopersicum)
- 30s ribosomal protein s15, chloroplastic (17 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l27 (15 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein us9 (16 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein s14 (16 kDa, Protein from Solanum lycopersicum)
- Mitogen-activated protein kinase (35 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s8 (24 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el34 (13 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s26 (14 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein us19 (17 kDa, Protein from Solanum lycopersicum)
- S10_plectin domain-containing protein (19 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s21 (9 kDa, Protein from Solanum lycopersicum)
- Pectinesterase (23 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein ul6 (22 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein ul14 (15 kDa, Protein from Solanum lycopersicum)
- 50s ribosomal protein l22, chloroplastic (19 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el32 (15 kDa, Protein from Solanum lycopersicum)
- Similar to 60s ribosomal protein l35 (14 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l10 (24 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s27 (9 kDa, Protein from Solanum lycopersicum)
- Thaliana 60s ribosomal protein l7 (28 kDa, Protein from Solanum lycopersicum)
- Trna (589 Da, RNA from Solanum lycopersicum)
- 40s ribosomal protein s6 (28 kDa, Protein from Solanum lycopersicum)
- Water (18 Da, Ligand)
- Ribos_l4_asso_c domain-containing protein (44 kDa, Protein from Solanum lycopersicum)
- Trna_1 (4 kDa, RNA from Solanum lycopersicum)
- 40s ribosomal protein s24 (15 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el31 (13 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l18e/l15p domain-containing protein (16 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l7ae domain-containing protein (29 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el30 (12 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el33 (12 kDa, Protein from Solanum lycopersicum)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein es28 (7 kDa, Protein from Solanum lycopersicum)
- Ribosomal_s7 domain-containing protein (23 kDa, Protein from Solanum lycopersicum)
Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7syo
Q-score: 0.312
Brown ZP, Abaeva IS, De S, Hellen CUT, Pestova TV, Frank J
EMBO J (2022) 41 pp. e110581-e110581 [ DOI: doi:10.15252/embj.2022110581 Pubmed: 35822879 ]
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (21 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Receptor for activated c kinase 1 (rack1) (35 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Us2 (sa) (32 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Hcv ires (128 kDa, RNA from Hepatitis C virus (isolate 1))
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Es4 (s4 x isoform) (29 kDa, Protein from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal small subunit with hcv ires (2 MDa, Complex)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Es7 (47 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (24 kDa, Protein from Oryctolagus cuniculus)
Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7syp
Q-score: 0.351
Brown ZP, Abaeva IS, De S, Hellen CUT, Pestova TV, Frank J
EMBO J (2022) 41 pp. e110581-e110581 [ DOI: doi:10.15252/embj.2022110581 Pubmed: 35822879 ]
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (21 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Receptor for activated c kinase 1 (rack1) (35 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Us2 (sa) (32 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Hcv ires (128 kDa, RNA from Hepatitis C virus (isolate 1))
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Es4 (s4 x isoform) (29 kDa, Protein from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal small subunit with hcv ires (2 MDa, Complex)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Es7 (47 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Hcv ires partially loaded mrna portion (3 kDa, RNA from Hepatitis C virus (isolate 1))
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7syq
Q-score: 0.396
Brown ZP, Abaeva IS, De S, Hellen CUT, Pestova TV, Frank J
EMBO J (2022) 41 pp. e110581-e110581 [ DOI: doi:10.15252/embj.2022110581 Pubmed: 35822879 ]
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (21 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Receptor for activated c kinase 1 (rack1) (35 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Us2 (sa) (32 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Hcv ires (128 kDa, RNA from Hepatitis C virus (isolate 1))
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Es4 (s4 x isoform) (29 kDa, Protein from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal small subunit with hcv ires (2 MDa, Complex)
- Eukaryotic translation initiation factor 1a, x-chromosomal (16 kDa, Protein from Homo sapiens)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Es7 (47 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7syr
Q-score: 0.347
Brown ZP, Abaeva IS, De S, Hellen CUT, Pestova TV, Frank J
EMBO J (2022) 41 pp. e110581-e110581 [ DOI: doi:10.15252/embj.2022110581 Pubmed: 35822879 ]
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (21 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Receptor for activated c kinase 1 (rack1) (35 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Us2 (sa) (32 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Hcv ires (128 kDa, RNA from Hepatitis C virus (isolate 1))
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Homo sapiens)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Es4 (s4 x isoform) (29 kDa, Protein from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Met-trna-i-met (24 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal small subunit with hcv ires (2 MDa, Complex)
- Eukaryotic translation initiation factor 1a, x-chromosomal (16 kDa, Protein from Homo sapiens)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Es7 (47 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7sys
Q-score: 0.469
Brown ZP, Abaeva IS, De S, Hellen CUT, Pestova TV, Frank J
EMBO J (2022) 41 pp. e110581-e110581 [ DOI: doi:10.15252/embj.2022110581 Pubmed: 35822879 ]
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (21 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Receptor for activated c kinase 1 (rack1) (35 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Us2 (sa) (32 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Hcv ires (128 kDa, RNA from Hepatitis C virus (isolate 1))
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Homo sapiens)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Es4 (s4 x isoform) (29 kDa, Protein from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Met-trna-i-met (24 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal small subunit with hcv ires (2 MDa, Complex)
- Eukaryotic translation initiation factor 1a, x-chromosomal (16 kDa, Protein from Homo sapiens)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Es7 (47 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7syn
Q-score: 0.395
Brown ZP, Abaeva IS, De S, Hellen CUT, Pestova TV, Frank J
To Be Published
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (21 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Receptor for activated c kinase 1 (rack1) (35 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Us2 (sa) (32 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Hcv ires (128 kDa, RNA from Hepatitis C virus (isolate 1))
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal small subunit with hcv ires (2 MDa, Complex from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Es4 (s4 x isoform) (29 kDa, Protein from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Es7 (47 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (24 kDa, Protein from Oryctolagus cuniculus)