Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9c8k
Q-score: 0.256
Sherlock ME, Langeberg CJ, Segar KE, Kieft JS
Cell Rep (2025) 44 pp. 115236-115236 [ DOI: doi:10.1016/j.celrep.2025.115236 Pubmed: 39893634 ]
- Magnesium ion (24 Da, Ligand)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es30 (6 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (18 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Receptor for activated c kinase 1 (rack1) (35 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
- Rabbit hemorrhagic disease virus reinitiation stimulating turbs rna bound to rabbit ribosome (Complex from Oryctolagus cuniculus)
- 40s ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us3 (26 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Rhdv reinitiation stimulating element rna (29 kDa, RNA from Rabbit hemorrhagic disease virus)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8zdb
Q-score: 0.414
Mol Cell (2025) [ DOI: doi:10.1016/j.molcel.2025.01.013 ]
- Small ribosomal subunit protein us7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5 (31 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es12 (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Ubiquitylated 40s ribosome with riok3 (Complex from Homo sapiens)
- Small ribosomal subunit protein es1 (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein rack1 (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es17 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
- 18s rrna (602 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Homo sapiens)
- Serine/threonine-protein kinase rio3 (59 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es30 (6 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Homo sapiens)
- Ubiquitin (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es32 (3 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8zdc
Q-score: 0.368
Mol Cell (2025) [ DOI: doi:10.1016/j.molcel.2025.01.013 ]
- Small ribosomal subunit protein us7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5 (31 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es12 (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- Pre-rrna-processing protein tsr1 homolog (91 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- Protein ltv1 homolog (54 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es1 (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein rack1 (35 kDa, Protein from Homo sapiens)
- Rna-binding protein nob1 (46 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es17 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Homo sapiens)
- Rna-binding protein pno1 (27 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Homo sapiens)
- Ubiquitylated pre-40s ribosome with riok3 (Complex from Homo sapiens)
- 18s rrna (604 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- Serine/threonine-protein kinase rio3 (59 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8zdd
Q-score: 0.396
Mol Cell (2025) [ DOI: doi:10.1016/j.molcel.2025.01.013 ]
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- Rna-binding protein pno1 (27 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Homo sapiens)
- Pre-rrna-processing protein tsr1 homolog (91 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Protein ltv1 homolog (54 kDa, Protein from Homo sapiens)
- 18s rrna (604 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein rack1 (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es1 (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5 (31 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- Serine/threonine-protein kinase rio3 (59 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Homo sapiens)
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es17 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es12 (14 kDa, Protein from Homo sapiens)
- Ubiquitylated pre-40s ribosome with riok3 (Complex from Homo sapiens)
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9frk
Q-score: 0.484
Bourgeois G, Coureux PD, Lazennec-Schurdevin C, Madru C, Gaillard T, Duchateau M, Chamot-Rooke J, Bourcier S, Mechulam Y, Schmitt E
Nat Commun (2025) 16 pp. 348-348 [ DOI: doi:10.1038/s41467-024-55718-5 Pubmed: 39753558 ]
- Small ribosomal subunit protein es19 (18 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us19 (16 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es17 (9 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us5 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein es25 (12 kDa, Protein from Saccharolobus solfataricus P2)
- High-resolution cryo-em structure of saccharolobus solfataricus 30s ribosomal subunit bound to mrna and initiator trna (Complex from Saccharolobus solfataricus P2)
- Water (18 Da, Ligand)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es28 (9 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es31 (8 kDa, Protein from Saccharolobus solfataricus P2)
- Vapb-type antitoxin (8 kDa, Protein from Saccharolobus solfataricus P2)
- Large ribosomal subunit protein el8 (13 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us13 (18 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es6 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es24 (13 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es1 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es27 (7 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us10 (12 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us4 (20 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us3 (25 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Saccharolobus solfataricus P2)
- Lsu ribosomal protein s30e (rps30e) (6 kDa, Protein from Saccharolobus solfataricus P2)
- Small zinc finger protein hvo-2753-like zinc-binding pocket domain-containing protein (7 kDa, Protein from Saccharolobus solfataricus P2)
- Spermine (202 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Saccharolobus solfataricus P2)
- As34 (8 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us8 (15 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Saccharolobus solfataricus P2)
- Trna met initiator (24 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us17 (12 kDa, Protein from Saccharolobus solfataricus P2)
- Mrna aef1a (9 kDa, RNA from Saccharolobus solfataricus P2)
- Rrna 16s (486 kDa, RNA from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es8 (14 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us12 (16 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es4 (27 kDa, Protein from Saccharolobus solfataricus P2)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9fs8
Q-score: 0.391
Bourgeois G, Coureux PD, Lazennec-Schurdevin C, Madru C, Gaillard T, Duchateau M, Chamot-Rooke J, Bourcier S, Mechulam Y, Schmitt E
Nat Commun (2025) 16 pp. 348-348 [ DOI: doi:10.1038/s41467-024-55718-5 Pubmed: 39753558 ]
- Small ribosomal subunit protein es19 (18 kDa, Protein from Saccharolobus solfataricus P2)
- Trna met initiator (24 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us19 (16 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es17 (9 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us5 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Zinc ion (65 Da, Ligand)
- Trna met initiator (Complex from Escherichia coli)
- Small ribosomal subunit protein es25 (12 kDa, Protein from Saccharolobus solfataricus P2)
- Saccharolobus solfataricus 30s (Complex from Saccharolobus solfataricus P2)
- Water (18 Da, Ligand)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es28 (9 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es31 (8 kDa, Protein from Saccharolobus solfataricus P2)
- Mrna ss-aef1a-like (8 kDa, RNA from Saccharolobus solfataricus P2)
- Large ribosomal subunit protein el8 (13 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us13 (18 kDa, Protein from Saccharolobus solfataricus P2)
- As33 (8 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es6 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es24 (13 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es1 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es27 (7 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us10 (12 kDa, Protein from Saccharolobus solfataricus P2)
- Mrna (Complex from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us4 (20 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us3 (25 kDa, Protein from Saccharolobus solfataricus P2)
- Lsu ribosomal protein s30e (rps30e) (6 kDa, Protein from Saccharolobus solfataricus P2)
- Small zinc finger protein hvo-2753-like zinc-binding pocket domain-containing protein (7 kDa, Protein from Saccharolobus solfataricus P2)
- Spermine (202 Da, Ligand)
- Cryo-em structure of saccharolobus solfataricus 30s with helix44 inposition down bound to mrna and initiator trna (Complex)
- Magnesium ion (24 Da, Ligand)
- Lsu ribosomal protein s26e (rps26e) (10 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Saccharolobus solfataricus P2)
- As34 (8 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us8 (15 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us17 (12 kDa, Protein from Saccharolobus solfataricus P2)
- Rrna 16s (486 kDa, RNA from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es8 (14 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us12 (16 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es4 (27 kDa, Protein from Saccharolobus solfataricus P2)
Translating 80S rabbit ribosome stalled by emetine with eEF2
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8vft
Q-score: 0.493
To Be Published
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- El36 (12 kDa, Protein from Oryctolagus cuniculus)
- Us3 (26 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- El15 (24 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- El6 (33 kDa, Protein from Oryctolagus cuniculus)
- Emetine (480 Da, Ligand)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El37 (11 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- El27 (15 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- El34 (13 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- El40 (10 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Mrna (1 kDa, RNA from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- Rabbit ribosome stalled by emetine with eef2 (4 MDa, Complex from Oryctolagus cuniculus)
- Es10 (18 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- E-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- Eef2 (95 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Ul11 (17 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
E. coli 70S-TEC complex in delivery state
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 9gr1
Q-score: 0.421
Webster MW, Chauvier A, Rahil H, Graziadei A, Charles K, Miropolskaya N, Takacs M, Saint-Andre C, Rappsilber J, Walter NG, Weixlbaumer A
Science (2024) 386 pp. eado8476-eado8476 [ Pubmed: 39607923 DOI: doi:10.1126/science.ado8476 ]
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli BL21(DE3))
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli BL21(DE3))
- 70s ribosome (Complex from Escherichia coli BL21(DE3))
- Phe-nh-trna(phe) a-site (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli BL21(DE3))
- Zinc ion (65 Da, Ligand)
- Mrna in ribosome channel (5 kDa, RNA from synthetic construct)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli BL21(DE3))
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli BL21(DE3))
- Trna(fmet) p-site (24 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli BL21(DE3))
- Phenylalanine (165 Da, Ligand)
- Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli BL21(DE3))
- Mrna in sd-asd duplex (3 kDa, RNA from synthetic construct)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli BL21(DE3))
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli BL21(DE3))
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli BL21(DE3))
- 23s ribosomal rna (948 kDa, RNA from Escherichia coli BL21(DE3))
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli BL21(DE3))
- 16s ribosomal rna (499 kDa, RNA from Escherichia coli BL21(DE3))
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli BL21(DE3))
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli BL21(DE3))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli BL21(DE3))
Structure of a yeast 48S-AUC preinitiation complex in closed conformation
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8rw1
Q-score: 0.404
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factors eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Methionine (149 Da, Ligand)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Water (18 Da, Ligand)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)