Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7tql
Q-score: 0.412
Lapointe CP, Grosely R, Sokabe M, Alvarado C, Wang J, Montabana E, Villa N, Shin BS, Dever TE, Fraser CS, Fernandez IS, Puglisi JD
Nature (2022) 607 pp. 185-190 [ DOI: doi:10.1038/s41586-022-04858-z Pubmed: 35732735 ]
- Ribosomal protein es17 (15 kDa, Protein from Homo sapiens)
- Human met-trnaimet (24 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s26 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (24 kDa, Protein from Homo sapiens)
- Ribosomal protein es12 (13 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein es28 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (13 kDa, Protein from Homo sapiens)
- Translation initiation factor eif1a (10 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (11 kDa, Protein from Homo sapiens)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Ribosomal protein es25 (8 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- Ribosomal protein us2 (47 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (8 kDa, Protein from Homo sapiens)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 40s ribosomal protein s27a (7 kDa, Protein from Homo sapiens)
- Ribosomal protein us15 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (21 kDa, Protein from Homo sapiens)
- Human 40s ribosomal subunit in complex with eif1a and eif5b (Cell from Homo sapiens)
- 40s ribosomal protein s19 (15 kDa, Protein from Homo sapiens)
- Ribosomal protein us10 (11 kDa, Protein from Homo sapiens)
- Ribosomal protein es30 (5 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (534 kDa, RNA from Homo sapiens)
- Receptor of activated protein c kinase 1 (34 kDa, Protein from Homo sapiens)
- Ribosomal protein us11 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (17 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 5b (69 kDa, Protein from Homo sapiens)
- Ribosomal protein el41 (2 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- Ribosomal protein us14 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (26 kDa, Protein from Homo sapiens)
- Ribosomal protein us13 (16 kDa, Protein from Homo sapiens)
- Isoform 3 of 40s ribosomal protein s24 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (23 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (21 kDa, Protein from Homo sapiens)
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6woo
Q-score: 0.487
Wang J, Wang J, Shin BS, Kim JR, Dever TE, Puglisi JD, Fernandez IS
Nat Commun (2020) 11 pp. 5003-5003 [ Pubmed: 33024099 DOI: doi:10.1038/s41467-020-18829-3 ]
- Eif5b (67 kDa, Protein from Saccharomyces cerevisiae)
- Ul23 (13 kDa, Protein from Saccharomyces cerevisiae)
- El30 (10 kDa, Protein from Saccharomyces cerevisiae)
- Rack1 (34 kDa, Protein from Saccharomyces cerevisiae)
- El15 (24 kDa, Protein from Saccharomyces cerevisiae)
- El14 (14 kDa, Protein from Saccharomyces cerevisiae)
- El42 (11 kDa, Protein from Saccharomyces cerevisiae)
- Us8 (14 kDa, Protein from Saccharomyces cerevisiae)
- Ul10 (21 kDa, Protein from Saccharomyces cerevisiae)
- Es1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Es4 (29 kDa, Protein from Saccharomyces cerevisiae)
- L10 (12 kDa, Protein from Saccharomyces cerevisiae)
- Us17 (16 kDa, Protein from Saccharomyces cerevisiae)
- El6 (19 kDa, Protein from Saccharomyces cerevisiae)
- Us4 (20 kDa, Protein from Saccharomyces cerevisiae)
- Us5 (23 kDa, Protein from Saccharomyces cerevisiae)
- El27 (15 kDa, Protein from Saccharomyces cerevisiae)
- Methionine (149 Da, Ligand)
- Ul1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Es17 (14 kDa, Protein from Saccharomyces cerevisiae)
- El18 (20 kDa, Protein from Saccharomyces cerevisiae)
- Us11 (13 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s ribosomal rrna (50 kDa, RNA from Saccharomyces cerevisiae)
- Ul15 (16 kDa, Protein from Saccharomyces cerevisiae)
- Es8 (22 kDa, Protein from Saccharomyces cerevisiae)
- El13 (22 kDa, Protein from Saccharomyces cerevisiae)
- N-carboxy-l-threonine (163 Da, Ligand)
- Ul30 (25 kDa, Protein from Saccharomyces cerevisiae)
- Ul13 (22 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- Us7 (22 kDa, Protein from Saccharomyces cerevisiae)
- Es6 (25 kDa, Protein from Saccharomyces cerevisiae)
- El43 (9 kDa, Protein from Saccharomyces cerevisiae)
- Ul6 (21 kDa, Protein from Saccharomyces cerevisiae)
- Us3 (24 kDa, Protein from Saccharomyces cerevisiae)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae)
- El36 (10 kDa, Protein from Saccharomyces cerevisiae)
- Us19 (11 kDa, Protein from Saccharomyces cerevisiae)
- Es10 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul5 (19 kDa, Protein from Saccharomyces cerevisiae)
- Ul29 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul16 (24 kDa, Protein from Saccharomyces cerevisiae)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- El41 (3 kDa, Protein from Saccharomyces cerevisiae)
- Es26 (11 kDa, Protein from Saccharomyces cerevisiae)
- El40 (5 kDa, Protein from Saccharomyces cerevisiae)
- Es25 (8 kDa, Protein from Saccharomyces cerevisiae)
- El22 (11 kDa, Protein from Saccharomyces cerevisiae)
- El24 (7 kDa, Protein from Saccharomyces cerevisiae)
- Es30 (6 kDa, Protein from Saccharomyces cerevisiae)
- El32 (14 kDa, Protein from Saccharomyces cerevisiae)
- Es28 (7 kDa, Protein from Saccharomyces cerevisiae)
- Es21 (9 kDa, Protein from Saccharomyces cerevisiae)
- 80s ribosome with eif5b, met-trnaimet, mrna, and gdp (Complex from Saccharomyces cerevisiae)
- Ul2 (26 kDa, Protein from Saccharomyces cerevisiae)
- El21 (18 kDa, Protein from Saccharomyces cerevisiae)
- Ul4 (38 kDa, Protein from Saccharomyces cerevisiae)
- Met-trna-imet (24 kDa, RNA from Saccharomyces cerevisiae)
- Ul18 (33 kDa, Protein from Saccharomyces cerevisiae)
- Us19 (15 kDa, Protein from Saccharomyces cerevisiae)
- El8 (25 kDa, Protein from Saccharomyces cerevisiae)
- El19 (21 kDa, Protein from Saccharomyces cerevisiae)
- El31 (12 kDa, Protein from Saccharomyces cerevisiae)
- El37 (9 kDa, Protein from Saccharomyces cerevisiae)
- El38 (8 kDa, Protein from Saccharomyces cerevisiae)
- Mrna (1 kDa, RNA from Saccharomyces cerevisiae)
- Us2 (22 kDa, Protein from Saccharomyces cerevisiae)
- Us15 (16 kDa, Protein from Saccharomyces cerevisiae)
- Us14 (6 kDa, Protein from Saccharomyces cerevisiae)
- Es19 (15 kDa, Protein from Saccharomyces cerevisiae)
- Es7 (21 kDa, Protein from Saccharomyces cerevisiae)
- Es27 (8 kDa, Protein from Saccharomyces cerevisiae)
- Es12 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul24 (14 kDa, Protein from Saccharomyces cerevisiae)
- Us12 (15 kDa, Protein from Saccharomyces cerevisiae)
- Ul22 (20 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Ul3 (43 kDa, Protein from Saccharomyces cerevisiae)
- El29 (6 kDa, Protein from Saccharomyces cerevisiae)
- El39 (6 kDa, Protein from Saccharomyces cerevisiae)
- Ul14 (14 kDa, Protein from Saccharomyces cerevisiae)
- El34 (13 kDa, Protein from Saccharomyces cerevisiae)
- Es24 (15 kDa, Protein from Saccharomyces cerevisiae)
- Us13 (15 kDa, Protein from Saccharomyces cerevisiae)
- El20 (20 kDa, Protein from Saccharomyces cerevisiae)
- Us10 (12 kDa, Protein from Saccharomyces cerevisiae)
- Es31 (6 kDa, Protein from Saccharomyces cerevisiae)
- El33 (11 kDa, Protein from Saccharomyces cerevisiae)