CryoEM structure of wheat 40S ribosomal subunit, head domain
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 8r57
Q-score: 0.58
Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS
Int J Mol Sci (2023) 24 [ Pubmed: 38139282 DOI: doi:10.3390/ijms242417453 ]
- 40s ribosomal protein s3 (25 kDa, Protein from Triticum aestivum)
- Rna (458-mer) (584 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein s16 (16 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s19 (17 kDa, Protein from Triticum aestivum)
- Ubiquitin-like domain-containing protein (17 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s28 (7 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit from triticum aestivum (common wheat) (Complex from Triticum aestivum)
- 40s ribosomal protein s15 (17 kDa, Protein from Triticum aestivum)
- Water (18 Da, Ligand)
- Plectin/es10 n-terminal domain-containing protein (20 kDa, Protein from Triticum aestivum)
- Ribosomal protein rack1 subfamily. wd repeat g protein beta family (36 kDa, Protein from Triticum aestivum)
- Ribosomal protein s20 (14 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s25 (12 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us7c (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s12 (15 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Triticum aestivum)
- Putative ribosomal protein s18 (17 kDa, Protein from Triticum aestivum)
Terminating ribosome with SRI-41315
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8scb
Q-score: 0.589
Coelho JPL, Yip MCJ, Oltion K, Taunton J, Shao S
Nat Chem Biol (2024) 20 pp. 877-884 [ DOI: doi:10.1038/s41589-023-01521-0 Pubmed: 38172604 ]
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (18 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 28s_rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Es4 (s4 x isoform) (29 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- 5s_rrna (38 kDa, RNA from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7 (29 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Receptor for activated c kinase 1 (rack1) (35 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Mrna (63 kDa, RNA from Homo sapiens)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ubiquitin a-52 residue ribosomal protein fusion product 1 (10 kDa, Protein from Oryctolagus cuniculus)
- 18s_rrna (603 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- 5.8s_rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic peptide chain release factor subunit 1 (51 kDa, Protein from Homo sapiens)
- Us2 (sa) (32 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- E_trna (24 kDa, RNA from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- (2s,4as)-2-cyclobutyl-10-methyl-3-phenyl-2,10-dihydropyrimido[4,5-b]quinoline-4,5(3h,4ah)-dione (359 Da, Ligand)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Nc (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Terminating rabbit ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l18 (21 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- Water (18 Da, Ligand)
- Ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- P_trna (24 kDa, RNA from Oryctolagus cuniculus)
- Atp binding cassette subfamily e member 1 (67 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- El35 (14 kDa, Protein from Oryctolagus cuniculus)
- Iron/sulfur cluster (351 Da, Ligand)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- El23 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
cA4-bound Cami1 in complex with 70S ribosome
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 8phj
Q-score: 0.584
Mogila I, Tamulaitiene G, Keda K, Timinskas A, Ruksenaite A, Sasnauskas G, Venclovas C, Siksnys V, Tamulaitis G
Science (2023) 382 pp. 1036-1041 [ DOI: doi:10.1126/science.adj2107 Pubmed: 38033086 ]
- Synthetic mrna (Complex from synthetic construct)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
- Fmet-trna(fmet) (24 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
- Crispr-associated protein cami1, ape2256 family (Complex from Allochromatium vinosum)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli)
- Cami1 bound in 70s e.coli ribosome (Complex)
- Large ribosomal subunit protein ul23 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- 70s e.coli ribosome (Complex from Escherichia coli)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl17 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
- Ca4 (Complex from Streptococcus thermophilus)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl28 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
- Crispr-associated protein, ape2256 family (45 kDa, Protein from Allochromatium vinosum)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
- 23s rrna (2862-mer) (941 kDa, RNA from Escherichia coli)
- Mrna (10 kDa, RNA from synthetic construct)
- Large ribosomal subunit protein ul10 (17 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl12 (12 kDa, Protein from Escherichia coli)
- Cyclic tetraadenosine monophosphate (ca4) (1 kDa, RNA from Streptococcus thermophilus)
- Large ribosomal subunit protein bl36a (4 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul11 (14 kDa, Protein from Escherichia coli)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli)
Structure of bacterial ribosome determined by cryoEM at 100 keV
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8pva
Q-score: 0.287
McMullan G, Naydenova K, Mihaylov D, Yamashita K, Peet MJ, Wilson H, Dickerson JL, Chen S, Cannone G, Lee Y, Hutchings KA, Gittins O, Sobhy MA, Wells T, El-Gomati MM, Dalby J, Meffert M, Schulze-Briese C, Henderson R, Russo CJ
PNAS (2023) 120 pp. e2312905120-e2312905120 [ Pubmed: 38011573 DOI: doi:10.1073/pnas.2312905120 ]
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- P-site trna-fmet (24 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- Mrna (9 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
- E. coli 70s ribosome (Complex from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- E-site trna (589 Da, RNA from Escherichia coli)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
- A-site trna-val (24 kDa, RNA from Escherichia coli)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli)
Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8apo
Q-score: 0.231
Tobiasson V, Berzina I, Amunts A
Nat Commun (2022) 13 pp. 6132-6132 [ DOI: doi:10.1038/s41467-022-33582-5 Pubmed: 36253367 ]
- Ml121 (27 kDa, Protein from Polytomella magna)
- Mtlsu-2 (26 kDa, RNA from Polytomella magna)
- Unknown (3 kDa, Protein from Polytomella magna)
- Ms111 (17 kDa, Protein from Polytomella magna)
- Ms113 (7 kDa, Protein from Polytomella magna)
- Ul14m (13 kDa, Protein from Polytomella magna)
- Ul22m (21 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Ml105 (15 kDa, Protein from Polytomella magna)
- Ul6m (27 kDa, Protein from Polytomella magna)
- Potassium ion (39 Da, Ligand)
- Ml128 (2 kDa, Protein from Polytomella magna)
- Mtlsu-4 (23 kDa, RNA from Polytomella magna)
- Ms23 (19 kDa, Protein from Polytomella magna)
- Mtssu-1 (32 kDa, RNA from Polytomella magna)
- Ml46 (20 kDa, Protein from Polytomella magna)
- Bl33m (5 kDa, Protein from Polytomella magna)
- Ul16m (19 kDa, Protein from Polytomella magna)
- Ms35 (19 kDa, Protein from Polytomella magna)
- Ml122 (7 kDa, Protein from Polytomella magna)
- Ml123 (45 kDa, Protein from Polytomella magna)
- Ul30m (20 kDa, Protein from Polytomella magna)
- Mitochondrial ribosome from polytomella magna in complex with a and p site trna as well as mrna (Complex from Polytomella magna)
- Ml40 (10 kDa, Protein from Polytomella magna)
- Ml116 (46 kDa, Protein from Polytomella magna)
- Us13m (12 kDa, Protein from Polytomella magna)
- Ms116 (10 kDa, Protein from Polytomella magna)
- Ml87 (16 kDa, Protein from Polytomella magna)
- Ms108 (5 kDa, Protein from Polytomella magna)
- Ml64 (14 kDa, Protein from Polytomella magna)
- Bl21m (22 kDa, Protein from Polytomella magna)
- Us14m (13 kDa, Protein from Polytomella magna)
- Zinc ion (65 Da, Ligand)
- Ml43 (14 kDa, Protein from Polytomella magna)
- Ml127 (16 kDa, Protein from Polytomella magna)
- Us9m (32 kDa, Protein from Polytomella magna)
- Us8m (43 kDa, Protein from Polytomella magna)
- Ml118 (40 kDa, Protein from Polytomella magna)
- Ml129 (8 kDa, Protein from Polytomella magna)
- Ul18m (12 kDa, Protein from Polytomella magna)
- Ml125 (22 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Bs18m (10 kDa, Protein from Polytomella magna)
- Mtssu-4 (108 kDa, RNA from Polytomella magna)
- Mt-5s (22 kDa, RNA from Polytomella magna)
- Us4m-2 (20 kDa, Protein from Polytomella magna)
- Bl31m (8 kDa, Protein from Polytomella magna)
- Us17m (15 kDa, Protein from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Mtlsu-5 (43 kDa, RNA from Polytomella magna)
- Us15m (18 kDa, Protein from Polytomella magna)
- Ms29 (39 kDa, Protein from Polytomella magna)
- Us2m (26 kDa, Protein from Polytomella magna)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Mtlsu-1 (35 kDa, RNA from Polytomella magna)
- Us10m (45 kDa, Protein from Polytomella magna)
- Ms31 (66 kDa, Protein from Polytomella magna)
- Mrna (2 kDa, RNA from Polytomella magna)
- Bl34m (6 kDa, Protein from Polytomella magna)
- Us3m (31 kDa, Protein from Polytomella magna)
- Bl32m (6 kDa, Protein from Polytomella magna)
- Mtssu-2 (67 kDa, RNA from Polytomella magna)
- A-site trna anticodon loop (6 kDa, RNA from Polytomella magna)
- Us7m-2 (9 kDa, Protein from Polytomella magna)
- Unknown (783 Da, Protein from Polytomella magna)
- Ml120 (22 kDa, Protein from Polytomella magna)
- Unknown (1 kDa, Protein from Polytomella magna)
- Ul9m (6 kDa, Protein from Polytomella magna)
- Ms38 (4 kDa, Protein from Polytomella magna)
- Ms115 (40 kDa, Protein from Polytomella magna)
- Ms34 (14 kDa, Protein from Polytomella magna)
- Bl24m (13 kDa, Protein from Polytomella magna)
- Ul23m (18 kDa, Protein from Polytomella magna)
- Ul2m (33 kDa, Protein from Polytomella magna)
- Bl28m (15 kDa, Protein from Polytomella magna)
- Bs21m (8 kDa, Protein from Polytomella magna)
- Ul5m (21 kDa, Protein from Polytomella magna)
- Ml124 (52 kDa, Protein from Polytomella magna)
- Ms33 (9 kDa, Protein from Polytomella magna)
- Ul15m (22 kDa, Protein from Polytomella magna)
- Bs19m (10 kDa, Protein from Polytomella magna)
- Ul3m (34 kDa, Protein from Polytomella magna)
- Ul4m (33 kDa, Protein from Polytomella magna)
- Mtlsu-3 (66 kDa, RNA from Polytomella magna)
- Mtlsu-6 (35 kDa, RNA from Polytomella magna)
- Us12m (13 kDa, Protein from Polytomella magna)
- Ms114 (15 kDa, Protein from Polytomella magna)
- Mtlsu-8 (112 kDa, RNA from Polytomella magna)
- Bl19m (19 kDa, Protein from Polytomella magna)
- Bl27m (16 kDa, Protein from Polytomella magna)
- Ul13m (21 kDa, Protein from Polytomella magna)
- Bl35m (16 kDa, Protein from Polytomella magna)
- Us5m (25 kDa, Protein from Polytomella magna)
- Us7m (12 kDa, Protein from Polytomella magna)
- Bl20m (13 kDa, Protein from Polytomella magna)
- Mtlsu-7 (171 kDa, RNA from Polytomella magna)
- Us4m (25 kDa, Protein from Polytomella magna)
- Unknown (954 Da, Protein from Polytomella magna)
- Ms37 (9 kDa, Protein from Polytomella magna)
- Us6m (13 kDa, Protein from Polytomella magna)
- Us3m-2 (12 kDa, Protein from Polytomella magna)
- Bs16m (14 kDa, Protein from Polytomella magna)
- Unknown (4 kDa, Protein from Polytomella magna)
- Bl17m (20 kDa, Protein from Polytomella magna)
- Ml63 (7 kDa, Protein from Polytomella magna)
- Ms107 (42 kDa, Protein from Polytomella magna)
- Us11m (12 kDa, Protein from Polytomella magna)
- Unknown (5 kDa, Protein from Polytomella magna)
- Water (18 Da, Ligand)
- Mtssu-3 (122 kDa, RNA from Polytomella magna)
- Ml126 (44 kDa, Protein from Polytomella magna)
- Unknown (6 kDa, Protein from Polytomella magna)
- Bl36m (5 kDa, Protein from Polytomella magna)
- Ul29m (14 kDa, Protein from Polytomella magna)
- P-site trna anticodon loop (7 kDa, RNA from Polytomella magna)
- Unknown (2 kDa, Protein from Polytomella magna)
- Bl25m (28 kDa, Protein from Polytomella magna)
- Ms112 (7 kDa, Protein from Polytomella magna)
- Ms106 (18 kDa, Protein from Polytomella magna)
- Ml41 (10 kDa, Protein from Polytomella magna)
- Ms26 (19 kDa, Protein from Polytomella magna)
- Bs1m (27 kDa, Protein from Polytomella magna)
- Ms45 (30 kDa, Protein from Polytomella magna)
- Magnesium ion (24 Da, Ligand)
- Ms110 (11 kDa, Protein from Polytomella magna)
- Ms109 (18 kDa, Protein from Polytomella magna)
Small subunit of the Chlamydomonas reinhardtii mitoribosome
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7pkq
Q-score: 0.231
Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Foerster F, Engel BD, Giege P, Drouard L, Hashem Y
To Be Published
- Ms45 (102 kDa, Protein from Chlamydomonas reinhardtii)
- Ms105 (28 kDa, Protein from Chlamydomonas reinhardtii)
- Ms106 (51 kDa, Protein from Chlamydomonas reinhardtii)
- Ms33 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Ms107 (43 kDa, Protein from Chlamydomonas reinhardtii)
- Bs18m (36 kDa, Protein from Chlamydomonas reinhardtii)
- Us15m (34 kDa, Protein from Chlamydomonas reinhardtii)
- Us4m (43 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein s6 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ms26 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Unk1 (2 kDa, Protein from Chlamydomonas reinhardtii)
- S4 rrna (133 kDa, RNA from Chlamydomonas reinhardtii)
- Ms35 (88 kDa, Protein from Chlamydomonas reinhardtii)
- Unk6 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Small subunit of the chlamydomonas reinhardtii mitochondrial ribosome (Complex from Chlamydomonas reinhardtii)
- Us7m,ribosomal_s7 domain-containing protein,ribosomal_s7 domain-containing protein,ribosomal_s7 domain-containing protein (32 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_s3_c domain-containing protein (50 kDa, Protein from Chlamydomonas reinhardtii)
- Us8m (44 kDa, Protein from Chlamydomonas reinhardtii)
- S1 rrna (32 kDa, RNA from Chlamydomonas reinhardtii)
- Ms23 (20 kDa, Protein from Chlamydomonas reinhardtii)
- Us19m (12 kDa, Protein from Chlamydomonas reinhardtii)
- S2 rrna (68 kDa, RNA from Chlamydomonas reinhardtii)
- Unk3 (4 kDa, Protein from Chlamydomonas reinhardtii)
- Ms34 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Us2m (53 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein s14 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ms45-insert (36 kDa, Protein from Chlamydomonas reinhardtii)
- Us11m (23 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein s13 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Unk2 (12 kDa, Protein from Chlamydomonas reinhardtii)
- S3 rrna (126 kDa, RNA from Chlamydomonas reinhardtii)
- Plastid-specific ribosomal protein 4 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Us12m (14 kDa, Protein from Chlamydomonas reinhardtii)
- Bs1m (26 kDa, Protein from Chlamydomonas reinhardtii)
- Us17m (22 kDa, Protein from Chlamydomonas reinhardtii)
- Ms29 (49 kDa, Protein from Chlamydomonas reinhardtii)
- Bs16m (10 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_s10 domain-containing protein (61 kDa, Protein from Chlamydomonas reinhardtii)
- Ms31/46 (15 kDa, Protein from Chlamydomonas reinhardtii)
- S5 drbm domain-containing protein (38 kDa, Protein from Chlamydomonas reinhardtii)
- Unk5 (9 kDa, Protein from Chlamydomonas reinhardtii)
- 30s ribosomal protein s9, chloroplastic (45 kDa, Protein from Chlamydomonas reinhardtii)
- Unk4 (6 kDa, Protein from Chlamydomonas reinhardtii)
Cryo-EM structure of the plant 40S subunit
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 8auv
Q-score: 0.622
Smirnova J, Loerke J, Kleinau G, Schmidt A, Burger J, Meyer EH, Mielke T, Scheerer P, Bock R, Spahn CMT, Zoschke R
Nat Plants (2023) 9 pp. 987-1000 [ Pubmed: 37156858 DOI: doi:10.1038/s41477-023-01407-y ]
- Spermidine (145 Da, Ligand)
- Us2 (40s ribosomal protein sa) (35 kDa, Protein from Nicotiana tabacum)
- Es10 (40s ribosomal protein s10) (23 kDa, Protein from Nicotiana tabacum)
- Es19 (40s ribosomal protein s19) (16 kDa, Protein from Nicotiana tabacum)
- Us19 (40s ribosomal protein s15) (17 kDa, Protein from Nicotiana tabacum)
- Us13 (40s ribosomal protein s18) (17 kDa, Protein from Nicotiana tabacum)
- Us4 (40s ribosomal protein s9) (23 kDa, Protein from Nicotiana tabacum)
- Es30 (40s ribosomal protein s30) (6 kDa, Protein from Nicotiana tabacum)
- Us14 (40s ribosomal protein s29) (6 kDa, Protein from Nicotiana tabacum)
- Es12 (40s ribosomal protein s12) (15 kDa, Protein from Nicotiana tabacum)
- Es27 (40s ribosomal protein s27) (9 kDa, Protein from Nicotiana tabacum)
- Es25 (40s ribosomal protein s25) (11 kDa, Protein from Nicotiana tabacum)
- Es6 (40s ribosomal protein s6) (28 kDa, Protein from Nicotiana tabacum)
- Us5 (40s ribosomal protein s2) (30 kDa, Protein from Nicotiana tabacum)
- Es26 (40s ribosomal protein s26) (14 kDa, Protein from Nicotiana tabacum)
- Es8 (40s ribosomal protein s8) (25 kDa, Protein from Nicotiana tabacum)
- Zinc ion (65 Da, Ligand)
- Spermine (202 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Us9 (40s ribosomal protein s16) (16 kDa, Protein from Nicotiana tabacum)
- Us8 (40s ribosomal protein s15a) (14 kDa, Protein from Nicotiana tabacum)
- 18s rrna (583 kDa, RNA from Nicotiana tabacum)
- Mrna (3 kDa, RNA from Nicotiana tabacum)
- 40s subunit of the cytosolic 80s ribosome from tobacco (Complex from Nicotiana tabacum)
- Water (18 Da, Ligand)
- Es21 (40s ribosomal protein s21) (9 kDa, Protein from Nicotiana tabacum)
- Us15 (40s ribosomal protein s13) (17 kDa, Protein from Nicotiana tabacum)
- Us17 (40s ribosomal protein s11) (17 kDa, Protein from Nicotiana tabacum)
- Rack1 (guanine nucleotide-binding protein subunit beta-like protein) (36 kDa, Protein from Nicotiana tabacum)
- Es4 (40s ribosomal protein s4) (29 kDa, Protein from Nicotiana tabacum)
- Es28 (40s ribosomal protein s28) (7 kDa, Protein from Nicotiana tabacum)
- Es17 (40s ribosomal protein s17) (16 kDa, Protein from Nicotiana tabacum)
- Es31 (ubiquitin-40s ribosomal protein s27a) (17 kDa, Protein from Nicotiana tabacum)
- Es7 (40s ribosomal protein s7) (22 kDa, Protein from Nicotiana tabacum)
- Us11 (40s ribosomal protein s14) (16 kDa, Protein from Nicotiana tabacum)
- Es24 (40s ribosomal protein s24) (15 kDa, Protein from Nicotiana tabacum)
- Es1 (40s ribosomal protein s3a) (29 kDa, Protein from Nicotiana tabacum)
- Magnesium ion (24 Da, Ligand)
- Us7 (40s ribosomal protein s5) (23 kDa, Protein from Nicotiana tabacum)
- Us12 (40s ribosomal protein s23) (15 kDa, Protein from Nicotiana tabacum)
- Us10 (40s ribosomal protein s20) (13 kDa, Protein from Nicotiana tabacum)
- Us3 (40s ribosomal protein s3) (27 kDa, Protein from Nicotiana tabacum)
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 8g60
Q-score: 0.576
Holm M, Natchiar SK, Rundlet EJ, Myasnikov AG, Watson ZL, Altman RB, Wang HY, Taunton J, Blanchard SC
Nature (2023) 617 pp. 200-207 [ Pubmed: 37020024 DOI: doi:10.1038/s41586-023-05908-w ]
- Es7 (22 kDa, Protein from Homo sapiens)
- Es25 (13 kDa, Protein from Homo sapiens)
- Rack1 (35 kDa, Protein from Homo sapiens)
- Es4 (29 kDa, Protein from Homo sapiens)
- El8 (30 kDa, Protein from Homo sapiens)
- El40 (14 kDa, Protein from Homo sapiens)
- El32 (15 kDa, Protein from Homo sapiens)
- Us3 (26 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- El30 (12 kDa, Protein from Homo sapiens)
- Es26 (13 kDa, Protein from Homo sapiens)
- Es24 (15 kDa, Protein from Homo sapiens)
- Us19 (17 kDa, Protein from Homo sapiens)
- Methionine (149 Da, Ligand)
- El34 (13 kDa, Protein from Homo sapiens)
- El24 (17 kDa, Protein from Homo sapiens)
- Us10 (13 kDa, Protein from Homo sapiens)
- Ul6 (21 kDa, Protein from Homo sapiens)
- El33 (12 kDa, Protein from Homo sapiens)
- El18 (21 kDa, Protein from Homo sapiens)
- Es19 (16 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- El14 (23 kDa, Protein from Homo sapiens)
- Ul29 (14 kDa, Protein from Homo sapiens)
- Spermidine (145 Da, Ligand)
- Es6 (28 kDa, Protein from Homo sapiens)
- Ul13 (23 kDa, Protein from Homo sapiens)
- El20 (20 kDa, Protein from Homo sapiens)
- Us7 (22 kDa, Protein from Homo sapiens)
- El15 (24 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Us9 (16 kDa, Protein from Homo sapiens)
- Us5 (31 kDa, Protein from Homo sapiens)
- Ul5 (20 kDa, Protein from Homo sapiens)
- Es8 (24 kDa, Protein from Homo sapiens)
- Us12 (15 kDa, Protein from Homo sapiens)
- Eef1a (50 kDa, Protein from Homo sapiens)
- Us8 (14 kDa, Protein from Homo sapiens)
- Ul15 (16 kDa, Protein from Homo sapiens)
- Us11 (16 kDa, Protein from Homo sapiens)
- Es27 (9 kDa, Protein from Homo sapiens)
- 1,4-diaminobutane (88 Da, Ligand)
- Ul11 (17 kDa, Protein from Homo sapiens)
- El38 (8 kDa, Protein from Homo sapiens)
- El41 (3 kDa, Protein from Homo sapiens)
- 4-{(2r,5s,6e)-2-hydroxy-5-methyl-7-[(2r,3s,4e,6z,10e)-3-methyl-12-oxooxacyclododeca-4,6,10-trien-2-yl]-4-oxooct-6-en-1-yl}piperidine-2,6-dione (457 Da, Ligand)
- P-site trna (24 kDa, RNA from Homo sapiens)
- Es28 (7 kDa, Protein from Homo sapiens)
- A-site trna (24 kDa, RNA from Homo sapiens)
- Es21 (9 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- El22 (14 kDa, Protein from Homo sapiens)
- Ul23 (17 kDa, Protein from Homo sapiens)
- El19 (23 kDa, Protein from Homo sapiens)
- Phenylalanine (165 Da, Ligand)
- El6 (32 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
- El28 (15 kDa, Protein from Homo sapiens)
- El27 (15 kDa, Protein from Homo sapiens)
- Ul3 (46 kDa, Protein from Homo sapiens)
- Human ribosome (Complex from Homo sapiens)
- El31 (14 kDa, Protein from Homo sapiens)
- El42 (12 kDa, Protein from Homo sapiens)
- El39 (6 kDa, Protein from Homo sapiens)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Ul14 (14 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- El37 (11 kDa, Protein from Homo sapiens)
- Ul22 (21 kDa, Protein from Homo sapiens)
- Plitidepsin (1 kDa, Ligand)
- Ul1 (24 kDa, Protein from Homo sapiens)
- Mrna (19 kDa, RNA from Homo sapiens)
- El43 (10 kDa, Protein from Homo sapiens)
- El13 (31 kDa, Protein from Homo sapiens)
- Ul18 (34 kDa, Protein from Homo sapiens)
- Us2 (32 kDa, Protein from Homo sapiens)
- El36 (12 kDa, Protein from Homo sapiens)
- Ul16 (24 kDa, Protein from Homo sapiens)
- Us14 (6 kDa, Protein from Homo sapiens)
- Es30 (14 kDa, Protein from Homo sapiens)
- Es31 (18 kDa, Protein from Homo sapiens)
- Es17 (15 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Es10 (18 kDa, Protein from Homo sapiens)
- Us15 (17 kDa, Protein from Homo sapiens)
- Ul4 (47 kDa, Protein from Homo sapiens)
- Es1 (30 kDa, Protein from Homo sapiens)
- Ul10 (34 kDa, Protein from Homo sapiens)
- Ul30 (29 kDa, Protein from Homo sapiens)
- El21 (18 kDa, Protein from Homo sapiens)
- Ul2 (28 kDa, Protein from Homo sapiens)
- Us4 (22 kDa, Protein from Homo sapiens)
- Anisomycin (265 Da, Ligand)
- Us17 (18 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Us13 (17 kDa, Protein from Homo sapiens)
- Ul24 (17 kDa, Protein from Homo sapiens)
- El29 (17 kDa, Protein from Homo sapiens)
- Es12 (14 kDa, Protein from Homo sapiens)