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was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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Tissue biology and disease modelling

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Structural biology

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Structural biology

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EMBL-EBI: European Bioinformatics Institute

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Epigenetics and neurobiology

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EMD-47628

Composite map Download Map 3D View

Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome (Composite Map)

Release date: Nov. 20, 2024
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 9e71
Q-score: 0.614

Nissley AJ, Shulgina Y, Kivimae RW, Downing BE, Penev PI, Banfield JF, Nayak DD, Cate JHD

To Be Published

Sample:

Small ribosomal subunit protein es1 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us19 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Ssu ribosomal protein s25e (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es27 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small zinc finger protein hvo-2753-like zinc-binding pocket domain-containing protein (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el13 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us10 (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el8 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el20 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el30 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es17 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el40 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Es28 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el39 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
23s rrna (984 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
70s ribosome (Complex from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es4 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul29 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el32 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el34 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul14 (15 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Parep1 domain containing protein (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el31 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul4 (31 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Dj-1/pfpi domain-containing protein (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us4 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us12 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Spermine (202 Da, Ligand)
Large ribosomal subunit protein ul22 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
30s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
As35 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
50s ribosomal protein l15e (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us7 (25 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
El42 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us9 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul2 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us13 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us14 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Water (18 Da, Ligand)
Large ribosomal subunit protein el14 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul30 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us11 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
5s rrna (41 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul16 (19 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us17 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul13 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el37 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Ssu ribosomal protein s26e (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Ssu ribosomal protein s30e (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el21 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Magnesium ion (24 Da, Ligand)
Small ribosomal subunit protein us5 (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el24 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es6 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul3 (37 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul18 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Zinc ion (65 Da, Ligand)
Large ribosomal subunit protein ul6 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el43 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us3 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us2 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el18 (13 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
16s rrna (487 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul23 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Lsu ribosomal protein l38e (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
50s subunit (Complex from Pyrobaculum calidifontis JCM 11548)

[Show more]

EMD-47668

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Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome in complex with Dri (Composite Map)

Release date: Nov. 20, 2024
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 9e7f
Q-score: 0.603

Nissley AJ, Shulgina Y, Kivimae RW, Downing BE, Penev PI, Banfield JF, Nayak DD, Cate JHD

To Be Published

Sample:

Small ribosomal subunit protein es1 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us19 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Ssu ribosomal protein s25e (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es27 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small zinc finger protein hvo-2753-like zinc-binding pocket domain-containing protein (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el13 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us10 (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el8 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el20 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el30 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es17 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el40 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el39 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Putative signal-transduction protein with cbs domains (72 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
23s rrna (984 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
70s ribosome (Complex from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es4 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul29 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el32 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el34 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul14 (15 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Parep1 domain containing protein (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el31 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul4 (31 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Dj-1/pfpi domain-containing protein (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us4 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us12 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Spermine (202 Da, Ligand)
Large ribosomal subunit protein ul22 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
30s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
As35 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
50s ribosomal protein l15e (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us7 (25 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
El42 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us9 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul2 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us13 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us14 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Water (18 Da, Ligand)
Large ribosomal subunit protein el14 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul30 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us11 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
5s rrna (41 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul16 (19 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us17 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul13 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el37 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Ssu ribosomal protein s26e (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Ssu ribosomal protein s30e (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el21 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Magnesium ion (24 Da, Ligand)
Small ribosomal subunit protein us5 (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el24 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es6 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul3 (37 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul18 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Zinc ion (65 Da, Ligand)
Large ribosomal subunit protein ul6 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el43 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us3 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us2 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein us15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Small ribosomal subunit protein es28 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein el18 (13 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
16s rrna (487 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
Large ribosomal subunit protein ul23 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
Lsu ribosomal protein l38e (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
50s subunit (Complex from Pyrobaculum calidifontis JCM 11548)

[Show more]

EMD-18458

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E167K RF2 on E. coli 70S release complex with UAA

Release date: Sept. 25, 2024
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8qk7
Q-score: 0.568

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

Sample:

Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
Peptide chain release factor rf2 (41 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli)
Potassium ion (39 Da, Ligand)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
1,4-diaminobutane (88 Da, Ligand)
Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
Mrna (15 kDa, RNA from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
Spermine (202 Da, Ligand)
Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
Ribosome release complex (2 MDa, Complex from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
Spermidine (145 Da, Ligand)
Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
Trna(fmet) (24 kDa, RNA from Escherichia coli)
Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
16s rrna (499 kDa, RNA from Escherichia coli)
Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul11 (14 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)

[Show more]

EMD-45392

Download Map 3D View Raw data

High-resolution C. elegans 80S ribosome structure - class 1

Release date: Sept. 11, 2024
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9cai
Q-score: 0.575

Sehgal E, Wohlenberg C, Soukup EM, Viscardi MJ, Serrao VHB, Arribere JA

RNA (2024) 30 pp. 1513-1528 [ Pubmed: 39209556 DOI: doi:10.1261/rna.080103.124 ]

Sample:

Small ribosomal subunit protein us5 (29 kDa, Protein from Caenorhabditis elegans)
28s rrna (1 MDa, RNA from Caenorhabditis elegans)
Small ribosomal subunit protein us4 (22 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us2 (30 kDa, Protein from Caenorhabditis elegans)
Trna (24 kDa, RNA from Caenorhabditis elegans)
5.8s rrna (49 kDa, RNA from Caenorhabditis elegans)
Small ribosomal subunit protein es8 (23 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul30 (28 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el18 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul23b (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el33 (13 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el15 (24 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul15 (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul22 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul16 (24 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el6 (24 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us14 (6 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es21 (9 kDa, Protein from Caenorhabditis elegans)
Ribosomal protein l37 (10 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us15 (17 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el20 (21 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es28 (7 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es26 (13 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el27 (15 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el39 (6 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el31 (14 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-ribosomal protein el40 fusion protein (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us17 (17 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul14 (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us7 (23 kDa, Protein from Caenorhabditis elegans)
Spermidine (145 Da, Ligand)
Small ribosomal subunit protein es12 (15 kDa, Protein from Caenorhabditis elegans)
Caenorhabditis elegans 80s ribosome (Complex from Caenorhabditis elegans)
Large ribosomal subunit protein el19 (23 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us11 (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul13 (23 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el43 (10 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-like domain-containing protein (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el38 (8 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el42 (12 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el22 (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us19 (17 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el14 (15 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us9 (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul2 (28 kDa, Protein from Caenorhabditis elegans)
18s rrna (565 kDa, RNA from Caenorhabditis elegans)
Large ribosomal subunit protein el13 (23 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul5b (22 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es7 (22 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us13 (17 kDa, Protein from Caenorhabditis elegans)
60s ribosomal protein l29 (7 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es27 (9 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el34 (12 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us3 (27 kDa, Protein from Caenorhabditis elegans)
Ribosomal protein, small subunit (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es6 (28 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us10 (13 kDa, Protein from Caenorhabditis elegans)
5s rrna (38 kDa, RNA from Caenorhabditis elegans)
Large ribosomal subunit protein ul29 (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el8 (30 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el36 (11 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es17 (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es19 (16 kDa, Protein from Caenorhabditis elegans)
Mrna (3 kDa, RNA from Caenorhabditis elegans)
Large ribosomal subunit protein el21 (18 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el30 (12 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul18 (33 kDa, Protein from Caenorhabditis elegans)
4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
Large ribosomal subunit protein ul3 (45 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es25 (12 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es1 (29 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul4 (38 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es24 (14 kDa, Protein from Caenorhabditis elegans)
El41 (3 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us12 (15 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es4 (29 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul24 (16 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-like protein 1-ribosomal protein es31 fusion protein (18 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el32 (15 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul6 (21 kDa, Protein from Caenorhabditis elegans)
Plectin/s10 n-terminal domain-containing protein (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el24 (17 kDa, Protein from Caenorhabditis elegans)

[Show more]

EMD-44533

Download Map 3D View Raw data

High resolution C. elegans 80S ribosome structure

Release date: Sept. 4, 2024
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 9bh5
Q-score: 0.517

Sehgal E, Wohlenberg C, Soukup EM, Viscardi MJ, Serrao VHB, Arribere JA

RNA (2024) 30 pp. 1513-1528 [ Pubmed: 39209556 DOI: doi:10.1261/rna.080103.124 ]

Sample:

Small ribosomal subunit protein us5 (29 kDa, Protein from Caenorhabditis elegans)
28s rrna (1 MDa, RNA from Caenorhabditis elegans)
Small ribosomal subunit protein us4 (22 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us2 (30 kDa, Protein from Caenorhabditis elegans)
Trna (24 kDa, RNA from Caenorhabditis elegans)
5.8s rrna (49 kDa, RNA from Caenorhabditis elegans)
Small ribosomal subunit protein es8 (23 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul30 (28 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el18 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul23b (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el33 (13 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el15 (24 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul15 (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul22 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul16 (24 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el6 (24 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us14 (6 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es21 (9 kDa, Protein from Caenorhabditis elegans)
Ribosomal protein l37 (10 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us15 (17 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el20 (21 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es28 (7 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es26 (13 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el27 (15 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el39 (6 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el31 (14 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-ribosomal protein el40 fusion protein (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us17 (17 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul14 (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us7 (23 kDa, Protein from Caenorhabditis elegans)
Spermidine (145 Da, Ligand)
Small ribosomal subunit protein es12 (15 kDa, Protein from Caenorhabditis elegans)
Caenorhabditis elegans 80s ribosome (Complex from Caenorhabditis elegans)
Large ribosomal subunit protein el19 (23 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us11 (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul13 (23 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el43 (10 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-like domain-containing protein (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el38 (8 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el42 (12 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el22 (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us19 (17 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el14 (15 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us9 (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul2 (28 kDa, Protein from Caenorhabditis elegans)
18s rrna (565 kDa, RNA from Caenorhabditis elegans)
Large ribosomal subunit protein el13 (23 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul5b (22 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es7 (22 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us13 (17 kDa, Protein from Caenorhabditis elegans)
60s ribosomal protein l29 (7 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es27 (9 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el34 (12 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us3 (27 kDa, Protein from Caenorhabditis elegans)
Ribosomal protein, small subunit (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es6 (28 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us10 (13 kDa, Protein from Caenorhabditis elegans)
5s rrna (38 kDa, RNA from Caenorhabditis elegans)
Large ribosomal subunit protein ul29 (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el8 (30 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el36 (11 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es17 (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es19 (16 kDa, Protein from Caenorhabditis elegans)
Mrna (3 kDa, RNA from Caenorhabditis elegans)
Large ribosomal subunit protein el21 (18 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el30 (12 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul18 (33 kDa, Protein from Caenorhabditis elegans)
4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
Large ribosomal subunit protein ul3 (45 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es25 (12 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es1 (29 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul4 (38 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es24 (14 kDa, Protein from Caenorhabditis elegans)
El41 (3 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us12 (15 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es4 (29 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul24 (16 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-like protein 1-ribosomal protein es31 fusion protein (18 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el32 (15 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul6 (21 kDa, Protein from Caenorhabditis elegans)
Plectin/s10 n-terminal domain-containing protein (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el24 (17 kDa, Protein from Caenorhabditis elegans)

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EMD-18903

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CryoEM structure of wheat 40S ribosomal subunit, head domain

Release date: Dec. 27, 2023
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 8r57
Q-score: 0.58

Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS

Int J Mol Sci (2023) 24 [ Pubmed: 38139282 DOI: doi:10.3390/ijms242417453 ]

Sample:

40s ribosomal protein s3 (25 kDa, Protein from Triticum aestivum)
Putative ribosomal protein s18 (17 kDa, Protein from Triticum aestivum)
Small ribosomal subunit from triticum aestivum (common wheat) (Complex from Triticum aestivum)
40s ribosomal protein s25 (12 kDa, Protein from Triticum aestivum)
Potassium ion (39 Da, Ligand)
40s ribosomal protein s12 (15 kDa, Protein from Triticum aestivum)
Water (18 Da, Ligand)
40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
Ribosomal protein rack1 subfamily. wd repeat g protein beta family (36 kDa, Protein from Triticum aestivum)
Plectin/es10 n-terminal domain-containing protein (20 kDa, Protein from Triticum aestivum)
Small ribosomal subunit protein us14 (6 kDa, Protein from Triticum aestivum)
40s ribosomal protein s15 (17 kDa, Protein from Triticum aestivum)
Magnesium ion (24 Da, Ligand)
Zinc ion (65 Da, Ligand)
Ubiquitin-like domain-containing protein (17 kDa, Protein from Triticum aestivum)
Ribosomal protein s20 (14 kDa, Protein from Triticum aestivum)
Rna (458-mer) (584 kDa, RNA from Triticum aestivum)
Small ribosomal subunit protein us7c (22 kDa, Protein from Triticum aestivum)
40s ribosomal protein s19 (17 kDa, Protein from Triticum aestivum)
40s ribosomal protein s28 (7 kDa, Protein from Triticum aestivum)
40s ribosomal protein s16 (16 kDa, Protein from Triticum aestivum)

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