EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

Edit your search query here and hit Return to execute it:

sample_name:"uS7" AND xref_links:"chebi" AND xref_links:"alphafold" AND author_name:"Ma"

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

EMD-38875

Download Map 3D View

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Release date: July 24, 2024
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 8y38
Q-score: 0.537

Ma CX, Li Y, Liu WT, Li Y, Zhao F, Lian XT, Ding J, Liu SM, Liu XP, Fan BZ, Liu LY, Xue F, Li J, Zhang JR, Xue Z, Pei XT, Lin JZ, Liang JH

Cell Discov (2024) 10 pp. 75-75 [ Pubmed: 38992047 DOI: doi:10.1038/s41421-024-00702-y ]

Sample:

Small ribosomal subunit protein bs20 (9 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us8 (14 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us7 (17 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul5 (19 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us5 (17 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl27 (8 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us4 (23 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul24 (11 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us12 (16 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl17 (13 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul14 (13 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us2 (26 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein bs16 (10 kDa, Protein from Staphylococcus aureus)
Staphylococcus aureus 70s ribosome (strain 15b196) in complex with mcx-190. (Complex from Staphylococcus aureus)
Small ribosomal subunit protein us15 (10 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us9 (14 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul18 (13 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul2 (29 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us19 (12 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us10 (11 kDa, Protein from Staphylococcus aureus)
Water (18 Da, Ligand)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Staphylococcus aureus)
16s ribosomal rna (500 kDa, RNA from Staphylococcus aureus)
Large ribosomal subunit protein bl25 (10 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl19 (13 kDa, Protein from Staphylococcus aureus)
5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus)
Small ribosomal subunit protein us14b (7 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl33b (5 kDa, Protein from Staphylococcus aureus)
23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus)
Small ribosomal subunit protein bs6 (11 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul6 (19 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl31b (6 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul15 (15 kDa, Protein from Staphylococcus aureus)
Magnesium ion (24 Da, Ligand)
7-[4-[3-[[(1~{s},2~{r},5~{r},6~{s},7~{s},8~{r},9~{r},11~{r},13~{r},14~{r})-8-[(2~{s},3~{r},4~{s},6~{r})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-2-ethyl-9-methoxy-1,5,7,9,11,13-hexamethyl-4,12,16-tris(oxidanylidene)-3,17-dioxa-15-azabicyclo[12.3.0]heptadecan-6-yl]oxycarbonylamino]propoxy]but-1-ynyl]-1-methyl-4-oxidanylidene-quinoline-3-carboxylic acid (969 Da, Ligand)
Large ribosomal subunit protein ul3 (23 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us3 (24 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl32 (5 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl36 (4 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul23 (10 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl28 (6 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us11 (13 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us17 (10 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us13 (13 kDa, Protein from Staphylococcus aureus)

[Show more]

EMD-38876

Download Map 3D View

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Release date: July 24, 2024
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8y39
Q-score: 0.353

Ma CX, Li Y, Liu WT, Li Y, Zhao F, Lian XT, Ding J, Liu SM, Liu XP, Fan BZ, Liu LY, Xue F, Li J, Zhang JR, Xue Z, Pei XT, Lin JZ, Liang JH

Cell Discov (2024) 10 pp. 75-75 [ Pubmed: 38992047 DOI: doi:10.1038/s41421-024-00702-y ]

Sample:

Small ribosomal subunit protein bs20 (9 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us8 (14 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us7 (17 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul5 (19 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us5 (17 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl27 (8 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us4 (23 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul24 (11 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us12 (16 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl17 (13 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul14 (13 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us2 (26 kDa, Protein from Staphylococcus aureus)
23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein bs16 (10 kDa, Protein from Staphylococcus aureus)
Staphylococcus aureus(atcc 29213) 70s ribosome in complex with mcx-190. (Complex from Staphylococcus aureus)
Small ribosomal subunit protein us15 (10 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us9 (14 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul18 (13 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul2 (29 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us19 (12 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us10 (11 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl25 (10 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl19 (13 kDa, Protein from Staphylococcus aureus)
5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus)
Small ribosomal subunit protein us14b (7 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl33b (5 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein bs6 (11 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul6 (19 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl31b (6 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul15 (15 kDa, Protein from Staphylococcus aureus)
Magnesium ion (24 Da, Ligand)
7-[4-[3-[[(1~{s},2~{r},5~{r},6~{s},7~{s},8~{r},9~{r},11~{r},13~{r},14~{r})-8-[(2~{s},3~{r},4~{s},6~{r})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-2-ethyl-9-methoxy-1,5,7,9,11,13-hexamethyl-4,12,16-tris(oxidanylidene)-3,17-dioxa-15-azabicyclo[12.3.0]heptadecan-6-yl]oxycarbonylamino]propoxy]but-1-ynyl]-1-methyl-4-oxidanylidene-quinoline-3-carboxylic acid (969 Da, Ligand)
Large ribosomal subunit protein ul3 (23 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us3 (24 kDa, Protein from Staphylococcus aureus)
16s ribosomal rna (500 kDa, RNA from Staphylococcus aureus)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl32 (5 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl36 (4 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul23 (10 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Staphylococcus aureus)
Large ribosomal subunit protein bl28 (6 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us11 (13 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us17 (10 kDa, Protein from Staphylococcus aureus)
Small ribosomal subunit protein us13 (13 kDa, Protein from Staphylococcus aureus)

[Show more]

EMD-17959

Download Map 3D View Raw data

Structure of bacterial ribosome determined by cryoEM at 100 keV

Release date: Nov. 29, 2023
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8pva
Q-score: 0.287

McMullan G, Naydenova K, Mihaylov D, Yamashita K, Peet MJ, Wilson H, Dickerson JL, Chen S, Cannone G, Lee Y, Hutchings KA, Gittins O, Sobhy MA, Wells T, El-Gomati MM, Dalby J, Meffert M, Schulze-Briese C, Henderson R, Russo CJ

PNAS (2023) 120 pp. e2312905120-e2312905120 [ Pubmed: 38011573 DOI: doi:10.1073/pnas.2312905120 ]

Sample:

Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
A-site trna-val (24 kDa, RNA from Escherichia coli)
Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
Mrna (9 kDa, RNA from Escherichia coli)
Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
16s rrna (499 kDa, RNA from Escherichia coli)
Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
E-site trna (589 Da, RNA from Escherichia coli)
Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
P-site trna-fmet (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
E. coli 70s ribosome (Complex from Escherichia coli)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: