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sample_name:"uS7" AND xref_links:"chebi" AND xref_links:"uniprot" AND author_name:"V"
The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Du Y, Albacete-Albacete L, Ramakrishnan V, Fraser CS
Nat Commun (2024) 15 pp. 6633-6633 [ Pubmed: 39117603 DOI: doi:10.1038/s41467-024-50672-8 ]
Sample:
- Small ribosomal subunit protein es17 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 1 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit b (77 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit g (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es30 (6 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es1 (30 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es12 (14 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Homo sapiens)
- Rrna (555 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
- Pdcd4-40s-eif4a-eif3-eif1 complex (2 MDa, Complex from Homo sapiens)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Homo sapiens)
- Eukaryotic initiation factor 4a-i (44 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- Programmed cell death protein 4 (52 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Homo sapiens)
- Spermidine (145 Da, Ligand)
- Small ribosomal subunit protein es32 (3 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Acetic acid (60 Da, Ligand)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us5 (31 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit i (36 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (166 kDa, Protein from Homo sapiens)
cA4-bound Cami1 in complex with 70S ribosome
Release date: Dec. 13, 2023
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 8phj
Q-score: 0.584
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 8phj
Q-score: 0.584
Mogila I, Tamulaitiene G, Keda K, Timinskas A, Ruksenaite A, Sasnauskas G, Venclovas C, Siksnys V, Tamulaitis G
Science (2023) 382 pp. 1036-1041 [ Pubmed: 38033086 DOI: doi:10.1126/science.adj2107 ]
Sample:
- Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
- Mrna (10 kDa, RNA from synthetic construct)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl17 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl12 (12 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl28 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
- Crispr-associated protein cami1, ape2256 family (Complex from Allochromatium vinosum)
- Fmet-trna(fmet) (24 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl36a (4 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Escherichia coli)
- Synthetic mrna (Complex from synthetic construct)
- 23s rrna (2862-mer) (941 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul10 (17 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
- Cami1 bound in 70s e.coli ribosome (Complex)
- 70s e.coli ribosome (Complex from Escherichia coli)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul23 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
- Ca4 (Complex from Streptococcus thermophilus)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Crispr-associated protein, ape2256 family (45 kDa, Protein from Allochromatium vinosum)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul11 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- Cyclic tetraadenosine monophosphate (ca4) (1 kDa, RNA from Streptococcus thermophilus)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
Release date: April 22, 2020
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 6w2s
Q-score: 0.415
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 6w2s
Q-score: 0.415
Neupane R, Pisareva VP, Rodriguez CF, Pisarev AV, Fernandez IS
eLife (2020) 9 [ Pubmed: 32286223 DOI: doi:10.7554/eLife.54575 ]
Sample:
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (547 kDa, RNA from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Es29 (6 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Us2 (33 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Oryctolagus cuniculus)
- Crpv 5'-utr ires (121 kDa, RNA from Cricket paralysis virus)
- Structure of the cricket paralysis virus 5-utr ires (crpv 5-utr-ires) bound to the small ribosomal subunit in the open state (class 1) (Complex from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Us5 (27 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit h (41 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit a (164 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit e (54 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit l (71 kDa, Protein from Oryctolagus cuniculus)
- Us11 (16 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
Release date: April 22, 2020
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 6w2t
Q-score: 0.42
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 6w2t
Q-score: 0.42
Neupane R, Pisareva VP, Rodriguez CF, Pisarev AV, Fernandez IS
eLife (2020) 9 [ Pubmed: 32286223 DOI: doi:10.7554/eLife.54575 ]
Sample:
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (547 kDa, RNA from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Es29 (6 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Structure of the cricket paralysis virus 5-utr ires (crpv 5-utr-ires) bound to the small ribosomal subunit in the closed state (class 2) (Complex from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Us2 (33 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Oryctolagus cuniculus)
- Crpv 5'-utr ires (121 kDa, RNA from Cricket paralysis virus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Us5 (27 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit h (41 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit a (164 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit e (54 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit l (71 kDa, Protein from Oryctolagus cuniculus)
- Us11 (16 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
Structure of the yeast mitochondrial ribosome - Class A
Release date: Feb. 15, 2017
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 5mrc
Q-score: 0.443
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 5mrc
Q-score: 0.443
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (2017) 355 pp. 528-531 [ Pubmed: 28154081 DOI: doi:10.1126/science.aal2415 ]
Sample:
- Bl32m (13 kDa, Protein from Baker's yeast)
- Bl28m (25 kDa, Protein from Baker's yeast)
- Ul2m (43 kDa, Protein from Baker's yeast)
- Ms33 (11 kDa, Protein from Baker's yeast)
- Ml38 (40 kDa, Protein from Baker's yeast)
- Bl33m (7 kDa, Protein from Baker's yeast)
- Ms44 (39 kDa, Protein from Baker's yeast)
- Us10m (21 kDa, Protein from Baker's yeast)
- Us14m (13 kDa, Protein from Baker's yeast)
- Bl21m (13 kDa, Protein from Baker's yeast)
- Ms45 (36 kDa, Protein from Baker's yeast)
- Ul5m (31 kDa, Protein from Baker's yeast)
- Us11m (16 kDa, Protein from Baker's yeast)
- Ul23m (24 kDa, Protein from Baker's yeast)
- Ml44 (36 kDa, Protein from Baker's yeast)
- Us2m (29 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- Us3m (47 kDa, Protein from Baker's yeast)
- Bs1m (39 kDa, Protein from Baker's yeast)
- Bl19m (17 kDa, Protein from Baker's yeast)
- Us13m (13 kDa, Protein from Baker's yeast)
- Ms43 (36 kDa, Protein from Baker's yeast)
- Ms42 (29 kDa, Protein from Baker's yeast)
- Ul16m (22 kDa, Protein from Baker's yeast)
- Bs18m (11 kDa, Protein from Baker's yeast)
- Unknown protein sequence 2 (12 kDa, Protein from Baker's yeast)
- Ul22m (25 kDa, Protein from Baker's yeast)
- Bl35m (7 kDa, Protein from Baker's yeast)
- Yeast mitochondrial ribosome - class a (Complex from Saccharomyces cerevisiae)
- Ul29m (26 kDa, Protein from Baker's yeast)
- Unknown protein sequence 1 (8 kDa, Protein from Baker's yeast)
- Ms26 (26 kDa, Protein from Baker's yeast)
- Ml40 (13 kDa, Protein from Baker's yeast)
- Bl34m (5 kDa, Protein from Baker's yeast)
- Ms38 (4 kDa, Protein from Baker's yeast)
- Ml59 (18 kDa, Protein from Baker's yeast)
- Ms35 (32 kDa, Protein from Baker's yeast)
- Bs21m (10 kDa, Protein from Baker's yeast)
- Us19m (9 kDa, Protein from Baker's yeast)
- Trna (24 kDa, RNA from Baker's yeast)
- Us8m (17 kDa, Protein from Baker's yeast)
- Ms47 (51 kDa, Protein from Baker's yeast)
- Ml46 (32 kDa, Protein from Baker's yeast)
- Us9m (27 kDa, Protein from Baker's yeast)
- Ul4m (28 kDa, Protein from Baker's yeast)
- Ms41 (11 kDa, Protein from Baker's yeast)
- 15s ribosomal rna (528 kDa, RNA from Baker's yeast)
- Bs16m (13 kDa, Protein from Baker's yeast)
- Ml49 (12 kDa, Protein from Baker's yeast)
- Us17m (27 kDa, Protein from Baker's yeast)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Us12m (13 kDa, Protein from Baker's yeast)
- Bl9m (8 kDa, Protein from Baker's yeast)
- Ms23 (27 kDa, Protein from Baker's yeast)
- Ml67 (25 kDa, Protein from Baker's yeast)
- Bl31m (20 kDa, Protein from Baker's yeast)
- Ms29 (45 kDa, Protein from Baker's yeast)
- Bl17m (26 kDa, Protein from Baker's yeast)
- Ul30m (9 kDa, Protein from Baker's yeast)
- Us7m (18 kDa, Protein from Baker's yeast)
- Ml60 (14 kDa, Protein from Baker's yeast)
- Bl36m (4 kDa, Protein from Baker's yeast)
- Ms46 (18 kDa, Protein from Baker's yeast)
- Magnesium ion (24 Da, Ligand)
- Bl27m (39 kDa, Protein from Baker's yeast)
- Sodium ion (22 Da, Ligand)
- Ul6m (21 kDa, Protein from Baker's yeast)
- Ul14m (14 kDa, Protein from Baker's yeast)
- Ms37 (10 kDa, Protein from Baker's yeast)
- Ul24m (33 kDa, Protein from Baker's yeast)
- Ul15m (24 kDa, Protein from Baker's yeast)
- Ml58 (20 kDa, Protein from Baker's yeast)
- Ul13m (18 kDa, Protein from Baker's yeast)
- Us4m (56 kDa, Protein from Baker's yeast)
- Ml50 (30 kDa, Protein from Baker's yeast)
- Ml57 (23 kDa, Protein from Baker's yeast)
- Bs6m (14 kDa, Protein from Baker's yeast)
- 21s ribosomal rna (1 MDa, RNA from Baker's yeast)
- Ul3m (27 kDa, Protein from Baker's yeast)
- Us5m (33 kDa, Protein from Baker's yeast)
- Us15m (29 kDa, Protein from Baker's yeast)
- Ml41 (14 kDa, Protein from Baker's yeast)
- Ml43 (15 kDa, Protein from Baker's yeast)
Structure of the yeast mitochondrial ribosome - Class B
Release date: Feb. 15, 2017
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 5mre
Q-score: 0.368
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 5mre
Q-score: 0.368
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (2017) 355 pp. 528-531 [ Pubmed: 28154081 DOI: doi:10.1126/science.aal2415 ]
Sample:
- Ml67 (25 kDa, Protein from Saccharomyces cerevisiae)
- Ms46 (18 kDa, Protein from Saccharomyces cerevisiae)
- Ul4m (28 kDa, Protein from Saccharomyces cerevisiae)
- Ul22m (25 kDa, Protein from Saccharomyces cerevisiae)
- Bl28m (25 kDa, Protein from Saccharomyces cerevisiae)
- Bs1m (39 kDa, Protein from Saccharomyces cerevisiae)
- Us5m (33 kDa, Protein from Saccharomyces cerevisiae)
- Bl33m (7 kDa, Protein from Saccharomyces cerevisiae)
- Us3m (47 kDa, Protein from Saccharomyces cerevisiae)
- Bl17m (26 kDa, Protein from Saccharomyces cerevisiae)
- Ul29m (26 kDa, Protein from Saccharomyces cerevisiae)
- 15s ribosomal rna (528 kDa, RNA from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Ms26 (26 kDa, Protein from Saccharomyces cerevisiae)
- Yeast mitochondrial ribosome - class b (Complex from Saccharomyces cerevisiae)
- Us12m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ms35 (32 kDa, Protein from Saccharomyces cerevisiae)
- Us13m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ml38 (40 kDa, Protein from Saccharomyces cerevisiae)
- Ul24m (33 kDa, Protein from Saccharomyces cerevisiae)
- Ml57 (23 kDa, Protein from Saccharomyces cerevisiae)
- Bl32m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ml50 (30 kDa, Protein from Saccharomyces cerevisiae)
- Ms33 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul13m (18 kDa, Protein from Saccharomyces cerevisiae)
- Us8m (17 kDa, Protein from Saccharomyces cerevisiae)
- Ul5m (31 kDa, Protein from Saccharomyces cerevisiae)
- Bs21m (10 kDa, Protein from Saccharomyces cerevisiae)
- Ul15m (24 kDa, Protein from Saccharomyces cerevisiae)
- Us2m (29 kDa, Protein from Saccharomyces cerevisiae)
- Bs18m (11 kDa, Protein from Saccharomyces cerevisiae)
- Ml59 (18 kDa, Protein from Saccharomyces cerevisiae)
- Ms44 (39 kDa, Protein from Saccharomyces cerevisiae)
- Ms41 (11 kDa, Protein from Saccharomyces cerevisiae)
- Bl31m (20 kDa, Protein from Saccharomyces cerevisiae)
- Bl35m (7 kDa, Protein from Saccharomyces cerevisiae)
- Ul14m (14 kDa, Protein from Saccharomyces cerevisiae)
- Ms37 (10 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ms23 (27 kDa, Protein from Saccharomyces cerevisiae)
- Ml58 (20 kDa, Protein from Saccharomyces cerevisiae)
- Ml49 (12 kDa, Protein from Saccharomyces cerevisiae)
- Us15m (29 kDa, Protein from Saccharomyces cerevisiae)
- Ms38 (4 kDa, Protein from Saccharomyces cerevisiae)
- Ml41 (14 kDa, Protein from Saccharomyces cerevisiae)
- Us9m (27 kDa, Protein from Saccharomyces cerevisiae)
- Us14m (13 kDa, Protein from Saccharomyces cerevisiae)
- Bl36m (4 kDa, Protein from Saccharomyces cerevisiae)
- Bl27m (39 kDa, Protein from Saccharomyces cerevisiae)
- Us7m (18 kDa, Protein from Saccharomyces cerevisiae)
- Ul30m (9 kDa, Protein from Saccharomyces cerevisiae)
- Trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Us11m (16 kDa, Protein from Saccharomyces cerevisiae)
- Ul16m (22 kDa, Protein from Saccharomyces cerevisiae)
- Bl9m (8 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein sequence 1 (8 kDa, Protein from Saccharomyces cerevisiae)
- Ul6m (21 kDa, Protein from Saccharomyces cerevisiae)
- Us4m (56 kDa, Protein from Saccharomyces cerevisiae)
- Bs6m (14 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Ms43 (36 kDa, Protein from Saccharomyces cerevisiae)
- Ul3m (27 kDa, Protein from Saccharomyces cerevisiae)
- Bs16m (13 kDa, Protein from Saccharomyces cerevisiae)
- Sodium ion (22 Da, Ligand)
- Ml43 (15 kDa, Protein from Saccharomyces cerevisiae)
- Ms42 (29 kDa, Protein from Saccharomyces cerevisiae)
- Us10m (21 kDa, Protein from Saccharomyces cerevisiae)
- Bl34m (5 kDa, Protein from Saccharomyces cerevisiae)
- Us19m (9 kDa, Protein from Saccharomyces cerevisiae)
- Ms45 (36 kDa, Protein from Saccharomyces cerevisiae)
- Ml44 (36 kDa, Protein from Saccharomyces cerevisiae)
- Ml60 (14 kDa, Protein from Saccharomyces cerevisiae)
- Ms29 (45 kDa, Protein from Saccharomyces cerevisiae)
- Ml40 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul23m (24 kDa, Protein from Saccharomyces cerevisiae)
- Us17m (27 kDa, Protein from Saccharomyces cerevisiae)
- Bl21m (13 kDa, Protein from Saccharomyces cerevisiae)
- 21s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- Ml46 (32 kDa, Protein from Saccharomyces cerevisiae)
- Ul2m (43 kDa, Protein from Saccharomyces cerevisiae)
- Bl19m (17 kDa, Protein from Saccharomyces cerevisiae)
- Ms47 (51 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein sequence 2 (12 kDa, Protein from Saccharomyces cerevisiae)
Structure of the yeast mitochondrial ribosome - Class C
Release date: Feb. 15, 2017
Resolution: 4.97 Å
EM Method: Single-particle
Fitted PDBs: 5mrf
Q-score: 0.241
Resolution: 4.97 Å
EM Method: Single-particle
Fitted PDBs: 5mrf
Q-score: 0.241
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (2017) 355 pp. 528-531 [ Pubmed: 28154081 DOI: doi:10.1126/science.aal2415 ]
Sample:
- Ml67 (25 kDa, Protein from Saccharomyces cerevisiae)
- Ms46 (18 kDa, Protein from Saccharomyces cerevisiae)
- Ul4m (28 kDa, Protein from Saccharomyces cerevisiae)
- Ul22m (25 kDa, Protein from Saccharomyces cerevisiae)
- Bl28m (25 kDa, Protein from Saccharomyces cerevisiae)
- Bs1m (39 kDa, Protein from Saccharomyces cerevisiae)
- Us5m (33 kDa, Protein from Saccharomyces cerevisiae)
- Bl33m (7 kDa, Protein from Saccharomyces cerevisiae)
- Us3m (47 kDa, Protein from Saccharomyces cerevisiae)
- Bl17m (26 kDa, Protein from Saccharomyces cerevisiae)
- Ul29m (26 kDa, Protein from Saccharomyces cerevisiae)
- Yeast mitochondrial ribosome - class c (Complex from Saccharomyces cerevisiae)
- 15s ribosomal rna (528 kDa, RNA from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Ms26 (26 kDa, Protein from Saccharomyces cerevisiae)
- Us12m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ms35 (32 kDa, Protein from Saccharomyces cerevisiae)
- Us13m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ml38 (40 kDa, Protein from Saccharomyces cerevisiae)
- Ul24m (33 kDa, Protein from Saccharomyces cerevisiae)
- Ml57 (23 kDa, Protein from Saccharomyces cerevisiae)
- Bl32m (13 kDa, Protein from Saccharomyces cerevisiae)
- Ml50 (30 kDa, Protein from Saccharomyces cerevisiae)
- Ms33 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul13m (18 kDa, Protein from Saccharomyces cerevisiae)
- Us8m (17 kDa, Protein from Saccharomyces cerevisiae)
- Ul5m (31 kDa, Protein from Saccharomyces cerevisiae)
- Bs21m (10 kDa, Protein from Saccharomyces cerevisiae)
- Ul15m (24 kDa, Protein from Saccharomyces cerevisiae)
- Us2m (29 kDa, Protein from Saccharomyces cerevisiae)
- Bs18m (11 kDa, Protein from Saccharomyces cerevisiae)
- Ml59 (18 kDa, Protein from Saccharomyces cerevisiae)
- Ms44 (39 kDa, Protein from Saccharomyces cerevisiae)
- Ms41 (11 kDa, Protein from Saccharomyces cerevisiae)
- Bl31m (20 kDa, Protein from Saccharomyces cerevisiae)
- Bl35m (7 kDa, Protein from Saccharomyces cerevisiae)
- Ul14m (14 kDa, Protein from Saccharomyces cerevisiae)
- Ms37 (10 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ms23 (27 kDa, Protein from Saccharomyces cerevisiae)
- Ml58 (20 kDa, Protein from Saccharomyces cerevisiae)
- Ml49 (12 kDa, Protein from Saccharomyces cerevisiae)
- Us15m (29 kDa, Protein from Saccharomyces cerevisiae)
- Ms38 (4 kDa, Protein from Saccharomyces cerevisiae)
- Ml41 (14 kDa, Protein from Saccharomyces cerevisiae)
- Us9m (27 kDa, Protein from Saccharomyces cerevisiae)
- Us14m (13 kDa, Protein from Saccharomyces cerevisiae)
- Bl36m (4 kDa, Protein from Saccharomyces cerevisiae)
- Bl27m (39 kDa, Protein from Saccharomyces cerevisiae)
- Us7m (18 kDa, Protein from Saccharomyces cerevisiae)
- Ul30m (9 kDa, Protein from Saccharomyces cerevisiae)
- Trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Us11m (16 kDa, Protein from Saccharomyces cerevisiae)
- Ul16m (22 kDa, Protein from Saccharomyces cerevisiae)
- Bl9m (8 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein sequence 1 (8 kDa, Protein from Saccharomyces cerevisiae)
- Ul6m (21 kDa, Protein from Saccharomyces cerevisiae)
- Us4m (56 kDa, Protein from Saccharomyces cerevisiae)
- Bs6m (14 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Ms43 (36 kDa, Protein from Saccharomyces cerevisiae)
- Ul3m (27 kDa, Protein from Saccharomyces cerevisiae)
- Bs16m (13 kDa, Protein from Saccharomyces cerevisiae)
- Sodium ion (22 Da, Ligand)
- Ml43 (15 kDa, Protein from Saccharomyces cerevisiae)
- Ms42 (29 kDa, Protein from Saccharomyces cerevisiae)
- Us10m (21 kDa, Protein from Saccharomyces cerevisiae)
- Bl34m (5 kDa, Protein from Saccharomyces cerevisiae)
- Us19m (9 kDa, Protein from Saccharomyces cerevisiae)
- Ms45 (36 kDa, Protein from Saccharomyces cerevisiae)
- Ml44 (36 kDa, Protein from Saccharomyces cerevisiae)
- Ml60 (14 kDa, Protein from Saccharomyces cerevisiae)
- Ms29 (45 kDa, Protein from Saccharomyces cerevisiae)
- Ml40 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul23m (24 kDa, Protein from Saccharomyces cerevisiae)
- Us17m (27 kDa, Protein from Saccharomyces cerevisiae)
- Bl21m (13 kDa, Protein from Saccharomyces cerevisiae)
- 21s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- Ml46 (32 kDa, Protein from Saccharomyces cerevisiae)
- Ul2m (43 kDa, Protein from Saccharomyces cerevisiae)
- Bl19m (17 kDa, Protein from Saccharomyces cerevisiae)
- Ms47 (51 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein sequence 2 (12 kDa, Protein from Saccharomyces cerevisiae)
Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B
Release date: Nov. 30, 2016
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 5lzs
Q-score: 0.462
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 5lzs
Q-score: 0.462
Shao S, Murray J, Brown A, Taunton J, Ramakrishnan V, Hegde RS
Cell (2016) 167 pp. 1229-1240.e15 [ Pubmed: 27863242 DOI: doi:10.1016/j.cell.2016.10.046 ]
Sample:
- El14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- (2~{s})-~{n}-[(2~{r})-1-[[(3~{s},6~{s},8~{s},12~{s},13~{r},16~{s},17~{r},20~{s},23~{s})-13-[(2~{s})-butan-2-yl]-20-[(4-methoxyphenyl)methyl]-6,17,21-trimethyl-3-(2-methylpropyl)-12-oxidanyl-2,5,7,10,15,19,22-heptakis(oxidanylidene)-8-propan-2-yl-9,18-dioxa-1,4,14,21-tetrazabicyclo[21.3.0]hexacosan-16-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-~{n}-methyl-1-[(2~{s})-2-oxidanylpropanoyl]pyrrolidine-2-carboxamide (1 kDa, Ligand)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (22 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Trna (24 kDa, RNA from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- El34 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- Mrna (3 kDa, RNA from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- E-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Elongation factor 1-alpha 1 (50 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Affinity-purified 80s ribosome-nascent chain complex stalled with didemnin b and containing aminoacyl-trna and eef1a. (3 MDa, Complex from Oryctolagus cuniculus)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (17 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (14 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Es10 (18 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Us4 (26 kDa, Protein from Oryctolagus cuniculus)
Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.
Release date: Nov. 30, 2016
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 5lzt
Q-score: 0.434
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 5lzt
Q-score: 0.434
Shao S, Murray J, Brown A, Taunton J, Ramakrishnan V, Hegde RS
Cell (2016) 167 pp. 1229-1240.e15 [ Pubmed: 27863242 DOI: doi:10.1016/j.cell.2016.10.046 ]
Sample:
- El14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- El6 (33 kDa, Protein from Oryctolagus cuniculus)
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- El36 (12 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- El15 (24 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Affinity-purified 80s ribosome-nascent chain complex reconstituted with erf1 and erf3. (3 MDa, Complex from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- Erf1 (51 kDa, Protein from Homo sapiens)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain (1 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- El34 (13 kDa, Protein from Oryctolagus cuniculus)
- E-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Us3 (26 kDa, Protein from Oryctolagus cuniculus)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- Ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (17 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (14 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Mrna (uga stop codon) (4 kDa, RNA from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- El37 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Erf3a (68 kDa, Protein from Homo sapiens)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- Es10 (18 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- El27 (15 kDa, Protein from Oryctolagus cuniculus)
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Release date: Nov. 30, 2016
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 5lzu
Q-score: 0.399
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 5lzu
Q-score: 0.399
Shao S, Murray J, Brown A, Taunton J, Ramakrishnan V, Hegde RS
Cell (2016) 167 pp. 1229-1240.e15 [ Pubmed: 27863242 DOI: doi:10.1016/j.cell.2016.10.046 ]
Sample:
- El14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic peptide chain release factor subunit 1 (51 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Affinity-purified 80s ribosome-nascent chain complex reconstituted with erf1. (3 MDa, Complex from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- El34 (13 kDa, Protein from Oryctolagus cuniculus)
- E-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Us3 (26 kDa, Protein from Oryctolagus cuniculus)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- Ul11 (17 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (14 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Mrna (uga stop codon) (4 kDa, RNA from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Es10 (18 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)