SFTSV Gn in complex with JK-8/12 Fab
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 8zhq
Q-score: 0.505
Zhang S, Shang H, Han S, Li J, Peng X, Wu Y, Yang X, Leng Y, Wang F, Cui N, Xu L, Zhang H, Guo Y, Xu X, Zhang N, Liu W, Li H
Ebiomedicine (2024) 111 pp. 105481-105481 [ DOI: doi:10.1016/j.ebiom.2024.105481 Pubmed: 39644769 ]
- Envelopment polyprotein (38 kDa, Protein from Severe fever with thrombocytopenia syndrome virus)
- Jk-12 fab heavy chain (22 kDa, Protein from Homo sapiens)
- Jk-8 fab heavy chain (23 kDa, Protein from Homo sapiens)
- Jk-12 fab light chain (22 kDa, Protein from Homo sapiens)
- Ternary complex of sftsv gn with neutralizing antibodies fab jk-8 and jk-12 (150 kDa, Complex from Homo sapiens)
- Jk-8 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
LH2 complex from Ectothiorhodospira haloalkaliphila at near-atomic resolution
Resolution: 1.7 Å
EM Method: Single-particle
Fitted PDBs: 8z4v
Q-score: 0.823
Burtseva AD, Baymukhametov TN, Bolshakov MA, Makhneva ZK, Mardanov AV, Tsedilin AM, Zhang H, Popov VO, Ashikhmin AA, Boyko KM
Structure (2024) [ Pubmed: 39694041 DOI: doi:10.1016/j.str.2024.11.015 ]
- Anhydrorhodovibrin (566 Da, Ligand)
- Bacteriochlorophyll a (911 Da, Ligand)
- Light-harvesting protein b:800-850 subunit beta (5 kDa, Protein from Ectothiorhodospira haloalkaliphila ATCC 51935)
- Lh2 complex from ectothiorhodospira haloalkaliphila (Complex from Ectothiorhodospira haloalkaliphila)
- Light-harvesting protein b-800/850 alpha chain (7 kDa, Protein from Ectothiorhodospira haloalkaliphila ATCC 51935)
- Water (18 Da, Ligand)
Cryo-EM strcuture of Cas5-HNH Cascade,apo-Conf2
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8zm3
Q-score: 0.22
To Be Published
- Crispr system cascade subunit casc (41 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated endoribonuclease cse3 (31 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr system cascade subunit casd (43 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated protein cse2 (crispr_cse2) (20 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Magnesium ion (24 Da, Ligand)
- Cas5-hnh cascade (400 MDa, Complex from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Rna (61-mer) (19 kDa, RNA from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated protein cse1 (crispr_cse1) (60 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
Cryo-EM structure of Cas5-HNH Cascade bound with dsDNA
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 9jxs
Q-score: 0.446
Liu YN, Wang L, Zhang H, Zhu H
To Be Published
- Crispr system cascade subunit casc (41 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated endoribonuclease cse3 (31 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated protein cse2 (crispr_cse2) (20 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr system cascade subunit casd (43 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Rna (61-mer) (19 kDa, RNA from Escherichia coli)
- Non-target dna (16 kDa, DNA from Escherichia coli)
- Cas5-hnh cascade complex bound with dna (400 MDa, Complex from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Dna (54-mer) (16 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Crispr-associated protein cse1 (crispr_cse1) (60 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
Cryo-EM structure of inhibitor 25a bound human urea transporter A2.
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8xd7
Q-score: 0.461
Huang SM, Huang ZZ, Liu L, Xiong MY, Zhang C, Cai BY, Wang MW, Cai K, Jia YL, Wang JL, Zhang MH, Xie YH, Li M, Zhang H, Weng CH, Wen X, Li Z, Sun Y, Yi F, Yang Z, Xiao P, Yang F, Yu X, Tie L, Yang BX, Sun JP
Nat Commun (2024) 15 pp. 10226-10226 [ Pubmed: 39587082 DOI: doi:10.1038/s41467-024-54305-y ]
Cryo-EM structure of urea bound human urea transporter A2.
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8xda
Q-score: 0.54
Huang SM, Huang ZZ, Liu L, Xiong MY, Zhang C, Cai BY, Wang MW, Cai K, Jia YL, Wang JL, Zhang MH, Xie YH, Li M, Zhang H, Weng CH, Wen X, Li Z, Sun Y, Yi F, Yang Z, Xiao P, Yang F, Yu X, Tie L, Yang BX, Sun JP
Nat Commun (2024) 15 pp. 10226-10226 [ Pubmed: 39587082 DOI: doi:10.1038/s41467-024-54305-y ]
- Water (18 Da, Ligand)
- Urea (60 Da, Ligand)
- Homotrimer complex of human urea transporter (Complex from Homo sapiens)
- Urea transporter 2 (43 kDa, Protein from Homo sapiens)
Cryo-EM structure of human urea transporter A2.
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8xdb
Q-score: 0.515
Huang SM, Huang ZZ, Liu L, Xiong MY, Zhang C, Cai BY, Wang MW, Cai K, Jia YL, Wang JL, Zhang MH, Xie YH, Li M, Zhang H, Weng CH, Wen X, Li Z, Sun Y, Yi F, Yang Z, Xiao P, Yang F, Yu X, Tie L, Yang BX, Sun JP
Nat Commun (2024) 15 pp. 10226-10226 [ Pubmed: 39587082 DOI: doi:10.1038/s41467-024-54305-y ]
Cryo-EM structure of human urea transporter A2.
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8xdc
Q-score: 0.562
Huang SM, Huang ZZ, Liu L, Xiong MY, Zhang C, Cai BY, Wang MW, Cai K, Jia YL, Wang JL, Zhang MH, Xie YH, Li M, Zhang H, Weng CH, Wen X, Li Z, Sun Y, Yi F, Yang Z, Xiao P, Yang F, Yu X, Tie L, Yang BX, Sun JP
Nat Commun (2024) 15 pp. 10226-10226 [ Pubmed: 39587082 DOI: doi:10.1038/s41467-024-54305-y ]
Cryo-EM structure of human urea transporter A2.
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8xdd
Q-score: 0.524
Huang SM, Huang ZZ, Liu L, Xiong MY, Zhang C, Cai BY, Wang MW, Cai K, Jia YL, Wang JL, Zhang MH, Xie YH, Li M, Zhang H, Weng CH, Wen X, Li Z, Sun Y, Yi F, Yang Z, Xiao P, Yang F, Yu X, Tie L, Yang BX, Sun JP
Nat Commun (2024) 15 pp. 10226-10226 [ Pubmed: 39587082 DOI: doi:10.1038/s41467-024-54305-y ]
- 1-(3-methoxyphenyl)methanamine (137 Da, Ligand)
- Homotrimer complex of human urea transporter (Complex from Homo sapiens)
- Urea transporter 2 (43 kDa, Protein from Homo sapien)
- 8-hydroxyquinoline-2-carboxylic acid (189 Da, Ligand)
Cryo-EM structure of zebrafish urea transporter.
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8xdh
Q-score: 0.57
Huang SM, Huang ZZ, Liu L, Xiong MY, Zhang C, Cai BY, Wang MW, Cai K, Jia YL, Wang JL, Zhang MH, Xie YH, Li M, Zhang H, Weng CH, Wen X, Li Z, Sun Y, Yi F, Yang Z, Xiao P, Yang F, Yu X, Tie L, Yang BX, Sun JP
Nat Commun (2024) 15 pp. 10226-10226 [ Pubmed: 39587082 DOI: doi:10.1038/s41467-024-54305-y ]
- Homotrimer complex of human urea transporter (Complex from Danio rerio)
- Urea transporter (47 kDa, Protein from Danio rerio)
- Urea (60 Da, Ligand)