Electron cryo-microscopy of porcine Factor VIII bound to lipid nanotubes and helical reconstruction
Dalm D, Galaz-Montoya JG, Miller JL, Grushin K, Villalobos A, Koyfman AY, Schmid MF, Stoilova-McPhie S
Sci Rep (2015) 5 pp. 11212-11212 [ DOI: doi:10.1038/srep11212 Pubmed: 26082135 ]
Density map of GluA2em in complex with LY451646 and glutamate
Resolution: 12.8 Å
EM Method: Single-particle
Fitted PDBs: 4uq6
Q-score: 0.097
Meyerson JR, Kumar J, Chittori S, Rao P, Pierson J, Bartesaghi A, Mayer ML, Subramaniam S
Nature (2014) 514 pp. 328-334 [ DOI: doi:10.1038/NATURE13603 Pubmed: 25119039 ]
- Glua2em with ly451646 and glutamate (370 kDa, Sample)
- Glua2 (370 kDa, Protein from Rattus norvegicus)
- Glutamate (Ligand from synthetic construct)
Visualizing GroEL/ES in the Act of Encapsulating a Non-Native Substrate Protein
Resolution: 15.9 Å
EM Method: Single-particle
Fitted PDBs: 3zq1
Q-score: 0.067
Chen D-H, Madan D, Weaver J, Lin Z, Schroder GF, Chiu W, Rye HS
Cell (2013) 153 pp. 1354-1365 [ Pubmed: 23746846 DOI: doi:10.1016/j.cell.2013.04.052 ]
- Groel-d398a (800 kDa, Protein from Escherichia coli K-12)
- Ribulose-1,5-bisphosphate carboxylase oxygenase (50 kDa, Protein from Rhodospirillum rubrum)
- Groes (70 kDa, Protein from Escherichia coli K-12)
- Non-native rubisco substrate protein encapsulated inside the cavity of groel capped by groes with the assistance of nucleotide atp (920 kDa, Sample)
- Adenosine triphosphate (Ligand from synthetic construct)
Asymmetric reconstruction of 13-protofilament GTPgammaS microtubules decorated with Mal3 CH domain
Maurer SP, Fourniol FJ, Bohner G, Moores CA, Surrey T
Cell (2012) 149 pp. 371-382 [ Pubmed: 22500803 DOI: doi:10.1016/j.cell.2012.02.049 ]
- Alpha-beta tubulin dimer (100 kDa, Protein from Sus scrofa)
- Guanosine 5'-o-(gamma-thio)triphosphate (Ligand from synthetic construct)
- Mal3 (16 kDa, Protein)
- 13-protofilament gtpgammas microtubule decorated with monomeric mal3 (Sample)
Asymmetric reconstruction of GDP microtubules decorated with monomeric Mal3
Maurer SP, Fourniol FJ, Bohner G, Moores CA, Surrey T
Cell (2012) 149 pp. 371-382 [ Pubmed: 22500803 DOI: doi:10.1016/j.cell.2012.02.049 ]
- Gdp microtubules decorated with monomeric mal3 (Sample)
- Alpha tubulin (50 kDa, Protein from Sus scrofa)
- Mal3 (16 kDa, Protein from Schizosaccharomyces pombe)
- Guanosine 5'-o-diphosphate (Ligand from unidentified)
- Beta tubulin (100 kDa, Protein from Sus scrofa)
In vivo 70S E.coli ribosome with PSRP1
Sharma MR, Donhofer A, Barat C, Marquez V, Datta PP, Fucini P, Wilson DN, Agrawal RK
J Biol Chem (2010) 285 pp. 4006-4014 [ DOI: doi:10.1074/jbc.M109.062299 Pubmed: 19965869 ]
- 70s ribosome (2 MDa, Complex from Escherichia coli)
- Plastid specific ribosomal protein-1 (270 kDa, Ligand from Spinacia oleracea)
- In vivo 70s e.coli ribosome with psrp1 (2 MDa, Sample)
Structure of the E. coli signal recognition particle bound to a translating ribosome.
Resolution: 15.5 Å
EM Method: Single-particle
Fitted PDBs: 2iy3
Q-score: 0.017
Schaffitzel C, Oswald M, Berger I, Ishikawa T, Abrahams JP, Koerten HK, Koning RI, Ban N
Nature (2006) 444 pp. 503-506 [ DOI: doi:10.1038/nature05182 Pubmed: 17086205 ]
- P-site trna (25 kDa, RNA from Escherichia coli)
- E. coli srp (90 kDa, Ligand from Escherichia coli)
- E.coli 70s ribosome (2 MDa, Complex from Escherichia coli)
- E-site trna (25 kDa, RNA from Escherichia coli)
- E. coli ribosome nascent chain complexes and signal recognition particle (Sample)
- A-site trna (25 kDa, RNA from Escherichia coli)
Barat C, Datta PP, Raj VS, Sharma MR, Kaji H, Kaji A, Agrawal RK
Mol Cell (2007) 27 pp. 250-261 [ Pubmed: 17643374 DOI: doi:10.1016/j.molcel.2007.06.005 ]
- 70s escherichia coli ribosome (2 MDa, Complex from Escherichia coli)
- Ribosome recycling factor (20 kDa, Ligand from Escherichia coli)
- 70s_rrf_ug (2 MDa, Sample)
Wendler P, Shorter J, Plisson C, Cashikar AG, Lindquist S, Saibil HR
Cell (2007) 131 pp. 1366-1377 [ Pubmed: 18160044 DOI: doi:10.1016/j.cell.2007.10.047 ]
- Atpgammas (Ligand)
- Hsp104 n728a (102 kDa, Protein from Saccharomyces cerevisiae)
- Yeast hsp104 n728a atpgs (600 kDa, Sample)
Locking and unlocking of ribosomal motions.
Resolution: 12.5 Å
EM Method: Single-particle
Fitted PDBs: 1pn6, 1pn7, 1pn8
Q-score: 0.024333334
Valle M, Zavialov A, Sengupta J, Rawat U, Ehrenberg M, Frank J
Cell (2003) 114 pp. 123-134 [ DOI: doi:10.1016/S0092-8674(03)00476-8 Pubmed: 12859903 ]
- Ef-g (Ligand from Escherichia coli)
- Gdp (Ligand from synthetic construct)
- Ef-g bound release complex in the presence of (Sample)
- Release complex (Complex from Escherichia coli)
- Fusidic acid (Ligand from synthetic construct)