Resolution: 12.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8qxu
Q-score: 0.104
Wagner J, Carvajal AI, Bracher A, Beck F, Wan W, Bohn S, Korner R, Baumeister W, Fernandez-Busnadiego R, Hartl FU
Nature (2024) 633 pp. 459-464 [ Pubmed: 39169181 DOI: doi:10.1038/s41586-024-07843-w ]
- Co-chaperonin groes (10 kDa, Protein from Escherichia coli BL21(DE3))
- Water (18 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- (groel)14(groes)7 (1 MDa, Complex from Escherichia coli BL21(DE3))
- Potassium ion (39 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chaperonin groel (57 kDa, Protein from Escherichia coli BL21(DE3))
Resolution: 13.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8qxv
Q-score: 0.081
Wagner J, Carvajal AI, Bracher A, Beck F, Wan W, Bohn S, Korner R, Baumeister W, Fernandez-Busnadiego R, Hartl FU
Nature (2024) 633 pp. 459-464 [ Pubmed: 39169181 DOI: doi:10.1038/s41586-024-07843-w ]
- Co-chaperonin groes (10 kDa, Protein from Escherichia coli BL21(DE3))
- Water (18 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Chaperonin groel (57 kDa, Protein from Escherichia coli BL21(DE3))
- (groel)14(groes)7 (Complex from Escherichia coli BL21(DE3))
- Adenosine-5'-diphosphate (427 Da, Ligand)
D1-state of wild type human mitochondrial LONP1 protease
Resolution: 15.0 Å
EM Method: Single-particle
Fitted PDBs: 7ngp
Q-score: 0.065
Mohammed I, Schmitz KA, Schenck N, Balasopoulos D, Topitsch A, Maier T, Abrahams JP
Structure (2022) 30 pp. 1254-1268.e7 [ DOI: doi:10.1016/j.str.2022.06.006 Pubmed: 35870450 ]
- D1-state of lonp1 hexameric complex (600 kDa, Complex from Homo sapiens)
- Lon protease homolog, mitochondrial (93 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Human mitochondrial Lon protease homolog, D2-state
Resolution: 12.0 Å
EM Method: Single-particle
Fitted PDBs: 7ngq
Q-score: 0.078
Mohammed I, Schmitz KA, Schenck N, Balasopoulos D, Topitsch A, Maier T, Abrahams JP
Structure (2022) 30 pp. 1254-1268.e7 [ DOI: doi:10.1016/j.str.2022.06.006 Pubmed: 35870450 ]
- Lon protease homolog, mitochondrial (Complex from Homo sapiens)
- Lon protease homolog, mitochondrial (93 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Structure of SWI/SNF chromatin remodeler RSC bound to a nucleosome
Resolution: 15.0 Å
EM Method: Single-particle
Fitted PDBs: 6tda
Q-score: 0.081
Wagner FR, Dienemann C, Wang H, Stutzer A, Tegunov D, Urlaub H, Cramer P
Nature (2020) 579 pp. 448-451 [ DOI: doi:10.1038/s41586-020-2088-0 Pubmed: 32188943 ]
- Chromatin remodelling complex rsc ('remodels the structure of chromatin') bound to a nucleosome (Complex)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Chromatin structure-remodeling complex subunit rsc7 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Regulator of ty1 transposition protein 102 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Chromatin structure-remodeling complex protein rsc6 (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nuclear protein sth1/nps1 (156 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Chromatin structure-remodeling complex protein rsc8 (126 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Atpase domain of sth1 bound to the nucleosome (Complex from Xenopus laevis)
- Dna (Complex from synthetic construct)
- Dna-i (72 kDa, DNA from synthetic construct)
- Rsc core (Complex from Saccharomyces cerevisiae S288C)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Chromatin structure-remodeling complex protein rsc58 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit rsc9 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-j (73 kDa, DNA from synthetic construct)
- Chromatin structure-remodeling complex subunit sfh1 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (32 kDa, Protein from Saccharomyces cerevisiae S288C)
- Actin-like protein arp9 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- High temperature lethal protein 1 (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Actin-related protein 7 (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit rsc4 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 12.7 Å
EM Method: Single-particle
Fitted PDBs: 6mmb
Q-score: 0.068
Jalali-Yazdi F, Chowdhury S, Yoshioka C, Gouaux E
Cell (2018) 175 pp. 1520-1532.e15 [ DOI: doi:10.1016/j.cell.2018.10.043 Pubmed: 30500536 ]
- Diheteromeric nmda receptor glun1/glun2a in the 'super-splayed' conformation, in complex with glycine and glutamate, in the presence of 1 micromolar zinc chloride, and at ph 6.1 (500 kDa, Complex from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (94 kDa, Protein from Rattus norvegicus)
- Glutamate receptor ionotropic, nmda 2a (93 kDa, Protein from Rattus norvegicus)
Resolution: 12.3 Å
EM Method: Single-particle
Fitted PDBs: 5neu
Q-score: 0.079
Kotecha A, Wang Q, Dong X, Ilca SL, Ondiviela M, Zihe R, Seago J, Charleston B, Fry EE, Abrescia NGA, Springer TA, Huiskonen JT, Stuart DI
Nat Commun (2017) 8 pp. 15408-15408 [ Pubmed: 28534487 DOI: doi:10.1038/ncomms15408 ]
- Integrin (Complex from Homo sapiens)
- Foot-and-mouth disease virus (Virus from Foot-and-mouth disease virus)
- Integrin beta-6 (51 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- O1 manisa vp2 (24 kDa, Protein from Foot-and-mouth disease virus)
- O1 manisa vp1 (22 kDa, Protein from Foot-and-mouth disease virus)
- Magnesium ion (24 Da, Ligand)
- Foot-and-mouth disease virus (9 MDa, Complex)
- Capsid protein (23 kDa, Protein from Foot-and-mouth disease virus)
- O1 manisa vp4 (8 kDa, Protein from Foot-and-mouth disease virus)
- Integrin alpha-v (64 kDa, Protein from Homo sapiens)
Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112
Resolution: 13.5 Å
EM Method: Single-particle
Fitted PDBs: 5me0
Q-score: 0.07
Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil-Carton D, Gualerzi CO, Fucini P, Connell SR
Nucleic Acids Res (2017) 45 pp. 2179-2187 [ DOI: doi:10.1093/nar/gkw1251 Pubmed: 27986852 ]
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- 30s pre-initiation complex stalled by ge81112 (Complex from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-1 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- N-formylmethionine (177 Da, Ligand)
- 30s ribosomal protein s16 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- Fmet-trna (24 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-2 (97 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (19 kDa, Protein from Geobacillus stearothermophilus)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (16 kDa, Protein from Escherichia coli K-12)
Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112
Resolution: 13.5 Å
EM Method: Single-particle
Fitted PDBs: 5me1
Q-score: 0.072
Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil-Carton D, Gualerzi CO, Fucini P, Connell SR
Nucleic Acids Res (2017) 45 pp. 2179-2187 [ DOI: doi:10.1093/nar/gkw1251 Pubmed: 27986852 ]
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- 30s pre-initiation complex ic-2 stalled by ge81112 (Complex from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-1 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- N-formylmethionine (177 Da, Ligand)
- 30s ribosomal protein s16 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- Fmet-trna (24 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-2 (97 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (19 kDa, Protein from Geobacillus stearothermophilus)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (16 kDa, Protein from Escherichia coli K-12)