Immature HIV-1 matrix structure
Resolution: 7.2 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7ovq
Q-score: 0.232
Qu K, Ke Z, Zila V, Anders-Osswein M, Glass B, Mucksch F, Muller R, Schultz C, Muller B, Krausslich HG, Briggs JAG
Science (2021) 373 pp. 700-704 [ Pubmed: 34353956 DOI: doi:10.1126/science.abe6821 ]
- Gag polyprotein (13 kDa, Protein from Human immunodeficiency virus 1)
- Myristic acid (228 Da, Ligand)
- Human immunodeficiency virus 1 (Virus from Human immunodeficiency virus 1)
Resolution: 7.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7ovr
Q-score: 0.245
Qu K, Ke Z, Zila V, Anders-Osswein M, Glass B, Mucksch F, Muller R, Schultz C, Muller B, Krausslich HG, Briggs JAG
Science (2021) 373 pp. 700-704 [ Pubmed: 34353956 DOI: doi:10.1126/science.abe6821 ]
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Myristic acid (228 Da, Ligand)
- Hiv-1 matrix (13 kDa, Protein from Human immunodeficiency virus 1)
- Human immunodeficiency virus 1 (Virus from Human immunodeficiency virus 1)
Resolution: 9.1 Å
EM Method: Subtomogram averaging
Fitted PDBs: 6ftg
Q-score: 0.126
Braunger K, Pfeffer S, Shrimal S, Gilmore R, Berninghausen O, Mandon EC, Becker T, Forster F, Beckmann R
Science (2018) 360 pp. 215-219 [ DOI: doi:10.1126/science.aar7899 Pubmed: 29519914 ]
- 60s ribosomal protein l6 (28 kDa, Protein from Rabbit)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Rabbit)
- El32 (15 kDa, Protein from Rabbit)
- El29 (14 kDa, Protein from Rabbit)
- Rpn2 (6 kDa, Protein from Dog)
- Ribosomal protein l11 (19 kDa, Protein from Rabbit)
- Ul13 (23 kDa, Protein from Rabbit)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- El22 (11 kDa, Protein from Rabbit)
- Protein transport protein sec61 subunit beta (3 kDa, Protein from Dog)
- Zinc ion (65 Da, Ligand)
- El8 (27 kDa, Protein from Rabbit)
- El30 (10 kDa, Protein from Rabbit)
- El34 (12 kDa, Protein from Rabbit)
- Ost4 (3 kDa, Protein from Dog)
- Ul14 (21 kDa, Protein from Rabbit)
- Ribosomal protein l24 (7 kDa, Protein from Rabbit)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- Ul30 (26 kDa, Protein from Rabbit)
- Ul2 (26 kDa, Protein from Rabbit)
- Sec61 protein conducting channel (Complex from Canis lupus familiaris)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Rabbit)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Dog)
- Protein transport protein sec61 subunit alpha isoform 1 (50 kDa, Protein from Dog)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3a (80 kDa, Protein from Dog)
- 28s ribosomal rna (1 MDa, RNA from Rabbit)
- [(2~{s},3~{r},4~{r},5~{s},6~{r})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{z},6~{z},10~{z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic acid (651 Da, Ligand)
- Tmem258 (5 kDa, Protein from Dog)
- Ribosomal protein l4 (41 kDa, Protein from Rabbit)
- 80s ribosome from wt canine rough microsomal membranes bound to the endoplasmic reticulum protein translocon (Complex)
- El38 (8 kDa, Protein from Rabbit)
- 60s ribosomal protein l29 (8 kDa, Protein from Rabbit)
- Ribosomal protein l12 (17 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Rabbit)
- Ost48 (2 kDa, Protein from Dog)
- El13 (24 kDa, Protein from Rabbit)
- El28 (15 kDa, Protein from Rabbit)
- Mammalian oligosaccharyltransferase (Complex from Canis lupus familiaris)
- El39 (6 kDa, Protein from Rabbit)
- Ul6 (21 kDa, Protein from Rabbit)
- El21 (18 kDa, Protein from Rabbit)
- El19 (21 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- 60s ribosomal protein l36 (11 kDa, Protein from Rabbit)
- Ribosomal protein l14 (16 kDa, Protein from Rabbit)
- El40 (6 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Rabbit)
- El20 (20 kDa, Protein from Rabbit)
- El42 (12 kDa, Protein from Rabbit)
- Ribosomal protein l37 (10 kDa, Protein from Rabbit)
- El33 (12 kDa, Protein from Rabbit)
- Ul22 (17 kDa, Protein from Rabbit)
- Ul15 (16 kDa, Protein from Rabbit)
- El31 (12 kDa, Protein from Rabbit)
- 60s ribosomal subunit (Complex from Oryctolagus cuniculus)
- Ul14 (13 kDa, Protein from Rabbit)
- Dad1 (8 kDa, Protein from Dog)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,rpn1 (14 kDa, Protein from Dog)
- Ribosomal protein l26 (15 kDa, Protein from Rabbit)
- Oligosaccharyltransferase complex subunit ostc (13 kDa, Protein from Dog)
- Ribosomal protein l37a (10 kDa, Protein from Rabbit)
- Ul3 (45 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- Ul23 (13 kDa, Protein from Rabbit)
Cryo-EM map of protofilament of microtubule doublet
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 5ucy
Q-score: 0.264
Ichikawa M, Liu D, Kastritis PL, Basu K, Hsu TC, Yang S, Bui KH
Nat Commun (2017) 8 pp. 15035-15035 [ DOI: doi:10.1038/ncomms15035 Pubmed: 28462916 ]
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Protofilament from ciliary microtubule doublet (Cellular component from Tetrahymena thermophila)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin alpha chain (48 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Tubulin beta chain (48 kDa, Protein from Tetrahymena thermophila)