EMPIAR-10484

Soft X-ray Cryo Tomography of Trypanosoma

Entry authors:
Darrow MC
Publication:
SuRVoS: Super-Region Volume Segmentation workbench
Luengo I, Darrow MC, Spink MC, Sun Y, Dai W, He CY, Chiu W, Pridmore T, Ashton AW, Duke EMH, Basham M , French AP 
J. Struct. Biol. 198 43-53 (2017)
PMID: 28246039
Experiment type:
SXT
Deposited:
2019-11-19
Released:
2023-10-17
Last modified:
2023-10-17
Dataset size:
1.5 GB
Experimental metadata:
Contains:
reconstructed volumes
Image not available

Image set

1. Trypanosoma
Category:reconstructed volumes
Image format:MRC
No. of images or tilt series:180
Frames per image:1
Pixel type:UNSIGNED BYTE
Details:
.The data.h5 file is the data output from SuRVoS.
It is in the same orientation as the annotations.

The Easy_Level*_Label*.rec files are the annotation output from SuRVoS.
Each file is a different class of objects as arbitrarily defined by the annotator.
They are all in the same orientations as the data.h5 file.

The .mpg file is the movie showing these data that was provided for publication.
It was created in Chimera.
The movie is open access, but if made avaialble anywhere should indicate the publication it came from:
Luengo, I., Darrow, M. C., Spink, M. C., Sun, Y., Dai, W., He, C. Y., et al.
SuRVoS: Super-Region Volume Segmentation Workbench.
J Struct Biol (198), doi: 10.1016/j.jsb.2017.02.007 (2017).
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