ID AAF51705; SV 1; linear; genomic DNA; STD; INV; 1047 BP. XX PA AE014296.5 XX PR Project:PRJNA13812; XX DT 13-SEP-2006 (Rel. 89, Created) DT 15-DEC-2023 (Rel. 144, Last updated, Version 27) XX DE Drosophila melanogaster (fruit fly) uncharacterized protein, isoform B XX KW . XX OS Drosophila melanogaster (fruit fly) OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; OC Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; OC Drosophilidae; Drosophila; Sophophora. XX RN [1] RX DOI; 10.1126/science.287.5461.2185. RX PUBMED; 10731132. RA Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., RA Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., RA George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., RA Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., Brandon R.C., RA Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., RA Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., RA An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., RA Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., RA Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., RA Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., RA Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., RA Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., RA Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., RA Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., RA Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., RA Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., RA Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., RA Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., RA Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., RA Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., RA Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., RA McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., RA Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., RA Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., RA Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., RA Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., RA Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., RA Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., RA Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., RA Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., RA Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., RA Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., RA Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.; RT "The genome sequence of Drosophila melanogaster"; RL Science 287(5461):2185-2195(2000). XX RN [2] RX PUBMED; 12537568. RA Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., RA Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., RA George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., RA Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J., RA Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., RA Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.; RT "Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster RT euchromatic genome sequence"; RL Genome Biol. 3(12):. XX RN [3] RX PUBMED; 12537572. RA Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., RA Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., RA Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P., RA Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A., Harris N.L., RA Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., RA Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.; RT "Annotation of the Drosophila melanogaster euchromatic genome: a systematic RT review"; RL Genome Biol. 3(12):. XX RN [4] RX PUBMED; 12537573. RA Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., RA Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., RA Celniker S.E.; RT "The transposable elements of the Drosophila melanogaster euchromatin: a RT genomics perspective"; RL Genome Biol. 3(12):. XX RN [5] RX PUBMED; 12537574. RA Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., RA Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., RA Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., RA Karpen G.H.; RT "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly"; RL Genome Biol. 3(12):. XX RN [6] RX PUBMED; 16110336. RA Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., RA Ashburner M., Anxolabehere D.; RT "Combined evidence annotation of transposable elements in genome RT sequences"; RL PLoS Comput Biol 1(2):166-175(2005). XX RN [7] RC Erratum:[Science. 2007 Sep 7;317(5843):1325] RX DOI; 10.1126/science.1139815. RX PUBMED; 17569856. RA Smith C.D., Shu S., Mungall C.J., Karpen G.H.; RT "The Release 5.1 annotation of Drosophila melanogaster heterochromatin"; RL Science 316(5831):1586-1591(2007). XX RN [8] RX DOI; 10.1126/science.1139816. RX PUBMED; 17569867. RA Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., RA Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., RA Dimitri P., Karpen G.H., Celniker S.E.; RT "Sequence finishing and mapping of Drosophila melanogaster RT heterochromatin"; RL Science 316(5831):1625-1628(2007). XX RN [9] RX PUBMED; 25589440. RA Hoskins R.A., Carlson J.W., Wan K.H., Park S., Mendez I., Galle S.E., RA Booth B.W., Pfeiffer B.D., George R.A., Svirskas R., Krzywinski M., RA Schein J., Accardo M.C., Damia E., Messina G., Mendez-Lago M., RA de Pablos B., Demakova O.V., Andreyeva E.N., Boldyreva L.V., Marra M., RA Carvalho A.B., Dimitri P., Villasante A., Zhimulev I.F., Rubin G.M., RA Karpen G.H., Celniker S.E.; RT "The Release 6 reference sequence of the Drosophila melanogaster genome"; RL Genome Res 25(3):445-458(2015). XX RN [10] RC Publication Status: Online-Only RX PUBMED; 26109356. RG FlyBase Consortium RA Crosby M.A., Gramates L.S., Dos Santos G., Matthews B.B., St Pierre S.E., RA Zhou P., Schroeder A.J., Falls K., Emmert D.B., Russo S.M., Gelbart W.M.; RT "Gene Model Annotations for Drosophila melanogaster: The Rule-Benders"; RL G3 (Bethesda, Md.) 5(8):1737-1749(2015). XX RN [11] RC Publication Status: Online-Only RX PUBMED; 26109357. RG FlyBase Consortium RA Matthews B.B., Dos Santos G., Crosby M.A., Emmert D.B., St Pierre S.E., RA Gramates L.S., Zhou P., Schroeder A.J., Falls K., Strelets V., Russo S.M., RA Gelbart W.M.; RT "Gene Model Annotations for Drosophila melanogaster: Impact of RT High-Throughput Data"; RL G3 (Bethesda, Md.) 5(8):1721-1736(2015). XX RN [12] RG Berkeley Drosophila Genome Project RA Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., RA Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., RA Rubin G.; RT "Drosophila melanogaster release 4 sequence"; RL Unpublished. XX RN [13] RA Adams M.D., Celniker S.E., Gibbs R.A., Rubin G.M., Venter C.J.; RT ; RL Submitted (21-MAR-2000) to the INSDC. RL Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA XX RN [14] RG Drosophila Heterochromatin Genome Project RA Smith C.D., Shu S., Mungall C.J., Karpen G.H.; RT ; RL Submitted (01-AUG-2006) to the INSDC. RL Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley RL National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, RL USA XX RN [15] RC Direct Submission RA Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S., RA Svirskas R., Karpen G.; RT ; RL Submitted (10-AUG-2006) to the INSDC. RL Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, RL One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA XX RN [16] RC Direct Submission RA Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., RA Svirskas R., Rubin G.; RT ; RL Submitted (10-AUG-2006) to the INSDC. RL Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, RL One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA XX RN [17] RG FlyBase RA ; RT ; RL Submitted (07-OCT-2015) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [18] RG FlyBase RA ; RT ; RL Submitted (07-DEC-2016) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [19] RG FlyBase RA ; RT ; RL Submitted (24-MAY-2018) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [20] RG FlyBase RA ; RT ; RL Submitted (22-APR-2019) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [21] RG FlyBase RA ; RT ; RL Submitted (20-APR-2020) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [22] RG FlyBase RA ; RT ; RL Submitted (19-OCT-2022) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [23] RG FlyBase RA ; RT ; RL Submitted (10-NOV-2022) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [24] RG FlyBase RA ; RT ; RL Submitted (13-DEC-2023) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX DR MD5; a1a5d10fa7ba238c903a68f1702e1e8d. DR BioSample; SAMN02803731. XX FH Key Location/Qualifiers FH FT source 1..1047 FT /organism="Drosophila melanogaster" FT /chromosome="3L" FT /mol_type="genomic DNA" FT /db_xref="taxon:7227" FT CDS complement(join(AE014296.5:21302605..21303549, FT AE014296.5:21303910..21304011)) FT /codon_start=1 FT /gene="CG11309" FT /gene_synonym="Dmel\CG11309" FT /locus_tag="Dmel_CG11309" FT /product="uncharacterized protein, isoform B" FT /EC_number="3.-.-.-" FT /note="CG11309 gene product from transcript CG11309-RB; FT CG11309-PB" FT /db_xref="GOA:Q9VP52" FT /db_xref="InterPro:IPR000073" FT /db_xref="InterPro:IPR018247" FT /db_xref="InterPro:IPR029058" FT /db_xref="UniProtKB/TrEMBL:Q9VP52" FT /protein_id="AAF51705.1" FT /translation="MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPFAEISITVPWG FT HISGKWYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAIDLPGHGLSSRLPDGC FT YYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICFVFAAVFPDKVDMIIGIDALKPHQ FT RPYPSVIRTMETRLDEFLREDERNRSKNEPPSYTYDELIERVYIGTFHSVNKEHCKHLM FT ARNIGKSEKYPDKYFFCRDRRLKFYNYAIGSQELCVEMANRITCPYLFIKAAQSSYFED FT KKYYDEVLDVLLKKPNFEYLEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKA FT KEAKESKL" XX SQ Sequence 1047 BP; 249 A; 272 C; 289 G; 237 T; 0 other; atggacacgg acgacaactc aagtggcact attaccggca gtgatcttgg ccagcgttat 60 cggcatgcag gcgacttaac tggcgaagcc ccaaccagac ccttcgccga gatcagcatt 120 acggttccat gggggcacat atccggcaag tggtacggtc cgcagaacgt ccaaccaatt 180 ttaggactgc acgggtggca ggataatgcg ggaacctttg atcgcctgat gccgctgctg 240 tcgccggacg tggcattcct cgcgatcgat cttcctggtc acgggctatc gtcccgactg 300 cctgatggct gctactacaa ctccgtggat aatctgtatg tgatccgcct gatcatgaag 360 cagtacaagt gggagaaagt gtccctggtt ggacactcaa tgtcgtccat tatttgcttt 420 gttttcgccg cggtctttcc ggacaaggtg gacatgatca ttgggattga tgccctgaaa 480 cctcatcagc gtccgtatcc gtcggttatt aggaccatgg aaacccgttt ggacgagttc 540 ttgcgtgaag acgaaaggaa ccggagtaag aacgagccgc cgagctacac ctacgatgaa 600 cttattgaga gggtctatat cggcaccttc cattcggtga acaaggagca ctgcaagcat 660 ttaatggctc gcaacatcgg caagtcggag aagtacccgg acaagtactt cttctgccgc 720 gataggcgtc tcaagtttta caactatgcc atcgggtccc aggagctgtg tgtggaaatg 780 gccaatcgga ttacatgtcc ttacttgttc atcaaggccg cccagtcctc gtatttcgag 840 gacaagaagt actacgacga ggtgctggat gtgctgttga agaagccgaa ctttgagtac 900 ctggaggtta atggctcgca ccatgtgcac atgaacgatc cagaggccat cattgcaccg 960 gtcaacaact ttatccagcg cttcggaccg gcggcagcgg ctgcatcccg ccagaaggcc 1020 aaggaggcga aggagagcaa gctttag 1047 //