ID   AAF51705; SV 1; linear; genomic DNA; STD; INV; 1047 BP.
XX
PA   AE014296.5
XX
PR   Project:PRJNA13812;
XX
DT   13-SEP-2006 (Rel. 89, Created)
DT   15-DEC-2023 (Rel. 144, Last updated, Version 27)
XX
DE   Drosophila melanogaster (fruit fly) uncharacterized protein, isoform B
XX
KW   .
XX
OS   Drosophila melanogaster (fruit fly)
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila; Sophophora.
XX
RN   [1]
RX   DOI; 10.1126/science.287.5461.2185.
RX   PUBMED; 10731132.
RA   Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
RA   Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
RA   George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
RA   Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., Brandon R.C.,
RA   Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C.,
RA   Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A.,
RA   An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A.,
RA   Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V.,
RA   Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J.,
RA   Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E.,
RA   Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B.,
RA   Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I.,
RA   Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C.,
RA   Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S.,
RA   Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M.,
RA   Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
RA   Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D.,
RA   Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F.,
RA   Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D.,
RA   Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A.,
RA   Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C.,
RA   McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C.,
RA   Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L.,
RA   Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R.,
RA   Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V.,
RA   Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
RA   Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E.,
RA   Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C.,
RA   Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A.,
RA   Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C.,
RA   Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G.,
RA   Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.,
RA   Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
RT   "The genome sequence of Drosophila melanogaster";
RL   Science 287(5461):2185-2195(2000).
XX
RN   [2]
RX   PUBMED; 12537568.
RA   Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
RA   Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
RA   George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
RA   Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
RA   Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
RA   Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
RT   "Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster
RT   euchromatic genome sequence";
RL   Genome Biol. 3(12):.
XX
RN   [3]
RX   PUBMED; 12537572.
RA   Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
RA   Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
RA   Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
RA   Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A., Harris N.L.,
RA   Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C.,
RA   Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.;
RT   "Annotation of the Drosophila melanogaster euchromatic genome: a systematic
RT   review";
RL   Genome Biol. 3(12):.
XX
RN   [4]
RX   PUBMED; 12537573.
RA   Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
RA   Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M.,
RA   Celniker S.E.;
RT   "The transposable elements of the Drosophila melanogaster euchromatin: a
RT   genomics perspective";
RL   Genome Biol. 3(12):.
XX
RN   [5]
RX   PUBMED; 12537574.
RA   Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
RA   Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
RA   Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
RA   Karpen G.H.;
RT   "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly";
RL   Genome Biol. 3(12):.
XX
RN   [6]
RX   PUBMED; 16110336.
RA   Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
RA   Ashburner M., Anxolabehere D.;
RT   "Combined evidence annotation of transposable elements in genome
RT   sequences";
RL   PLoS Comput Biol 1(2):166-175(2005).
XX
RN   [7]
RC   Erratum:[Science. 2007 Sep 7;317(5843):1325]
RX   DOI; 10.1126/science.1139815.
RX   PUBMED; 17569856.
RA   Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
RT   "The Release 5.1 annotation of Drosophila melanogaster heterochromatin";
RL   Science 316(5831):1586-1591(2007).
XX
RN   [8]
RX   DOI; 10.1126/science.1139816.
RX   PUBMED; 17569867.
RA   Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
RA   Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
RA   Dimitri P., Karpen G.H., Celniker S.E.;
RT   "Sequence finishing and mapping of Drosophila melanogaster
RT   heterochromatin";
RL   Science 316(5831):1625-1628(2007).
XX
RN   [9]
RX   PUBMED; 25589440.
RA   Hoskins R.A., Carlson J.W., Wan K.H., Park S., Mendez I., Galle S.E.,
RA   Booth B.W., Pfeiffer B.D., George R.A., Svirskas R., Krzywinski M.,
RA   Schein J., Accardo M.C., Damia E., Messina G., Mendez-Lago M.,
RA   de Pablos B., Demakova O.V., Andreyeva E.N., Boldyreva L.V., Marra M.,
RA   Carvalho A.B., Dimitri P., Villasante A., Zhimulev I.F., Rubin G.M.,
RA   Karpen G.H., Celniker S.E.;
RT   "The Release 6 reference sequence of the Drosophila melanogaster genome";
RL   Genome Res 25(3):445-458(2015).
XX
RN   [10]
RC   Publication Status: Online-Only
RX   PUBMED; 26109356.
RG   FlyBase Consortium
RA   Crosby M.A., Gramates L.S., Dos Santos G., Matthews B.B., St Pierre S.E.,
RA   Zhou P., Schroeder A.J., Falls K., Emmert D.B., Russo S.M., Gelbart W.M.;
RT   "Gene Model Annotations for Drosophila melanogaster: The Rule-Benders";
RL   G3 (Bethesda, Md.) 5(8):1737-1749(2015).
XX
RN   [11]
RC   Publication Status: Online-Only
RX   PUBMED; 26109357.
RG   FlyBase Consortium
RA   Matthews B.B., Dos Santos G., Crosby M.A., Emmert D.B., St Pierre S.E.,
RA   Gramates L.S., Zhou P., Schroeder A.J., Falls K., Strelets V., Russo S.M.,
RA   Gelbart W.M.;
RT   "Gene Model Annotations for Drosophila melanogaster: Impact of
RT   High-Throughput Data";
RL   G3 (Bethesda, Md.) 5(8):1721-1736(2015).
XX
RN   [12]
RG   Berkeley Drosophila Genome Project
RA   Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
RA   Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C.,
RA   Rubin G.;
RT   "Drosophila melanogaster release 4 sequence";
RL   Unpublished.
XX
RN   [13]
RA   Adams M.D., Celniker S.E., Gibbs R.A., Rubin G.M., Venter C.J.;
RT   ;
RL   Submitted (21-MAR-2000) to the INSDC.
RL   Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA
XX
RN   [14]
RG   Drosophila Heterochromatin Genome Project
RA   Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
RT   ;
RL   Submitted (01-AUG-2006) to the INSDC.
RL   Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley
RL   National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720,
RL   USA
XX
RN   [15]
RC   Direct Submission
RA   Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S.,
RA   Svirskas R., Karpen G.;
RT   ;
RL   Submitted (10-AUG-2006) to the INSDC.
RL   Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory,
RL   One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
XX
RN   [16]
RC   Direct Submission
RA   Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
RA   Svirskas R., Rubin G.;
RT   ;
RL   Submitted (10-AUG-2006) to the INSDC.
RL   Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory,
RL   One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
XX
RN   [17]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (07-OCT-2015) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [18]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (07-DEC-2016) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [19]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (24-MAY-2018) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [20]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (22-APR-2019) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [21]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (20-APR-2020) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [22]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (19-OCT-2022) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [23]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (10-NOV-2022) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [24]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (13-DEC-2023) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
DR   MD5; a1a5d10fa7ba238c903a68f1702e1e8d.
DR   BioSample; SAMN02803731.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1047
FT                   /organism="Drosophila melanogaster"
FT                   /chromosome="3L"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:7227"
FT   CDS             complement(join(AE014296.5:21302605..21303549,
FT                   AE014296.5:21303910..21304011))
FT                   /codon_start=1
FT                   /gene="CG11309"
FT                   /gene_synonym="Dmel\CG11309"
FT                   /locus_tag="Dmel_CG11309"
FT                   /product="uncharacterized protein, isoform B"
FT                   /EC_number="3.-.-.-"
FT                   /note="CG11309 gene product from transcript CG11309-RB;
FT                   CG11309-PB"
FT                   /db_xref="GOA:Q9VP52"
FT                   /db_xref="InterPro:IPR000073"
FT                   /db_xref="InterPro:IPR018247"
FT                   /db_xref="InterPro:IPR029058"
FT                   /db_xref="UniProtKB/TrEMBL:Q9VP52"
FT                   /protein_id="AAF51705.1"
FT                   /translation="MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPFAEISITVPWG
FT                   HISGKWYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAIDLPGHGLSSRLPDGC
FT                   YYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICFVFAAVFPDKVDMIIGIDALKPHQ
FT                   RPYPSVIRTMETRLDEFLREDERNRSKNEPPSYTYDELIERVYIGTFHSVNKEHCKHLM
FT                   ARNIGKSEKYPDKYFFCRDRRLKFYNYAIGSQELCVEMANRITCPYLFIKAAQSSYFED
FT                   KKYYDEVLDVLLKKPNFEYLEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKA
FT                   KEAKESKL"
XX
SQ   Sequence 1047 BP; 249 A; 272 C; 289 G; 237 T; 0 other;
     atggacacgg acgacaactc aagtggcact attaccggca gtgatcttgg ccagcgttat        60
     cggcatgcag gcgacttaac tggcgaagcc ccaaccagac ccttcgccga gatcagcatt       120
     acggttccat gggggcacat atccggcaag tggtacggtc cgcagaacgt ccaaccaatt       180
     ttaggactgc acgggtggca ggataatgcg ggaacctttg atcgcctgat gccgctgctg       240
     tcgccggacg tggcattcct cgcgatcgat cttcctggtc acgggctatc gtcccgactg       300
     cctgatggct gctactacaa ctccgtggat aatctgtatg tgatccgcct gatcatgaag       360
     cagtacaagt gggagaaagt gtccctggtt ggacactcaa tgtcgtccat tatttgcttt       420
     gttttcgccg cggtctttcc ggacaaggtg gacatgatca ttgggattga tgccctgaaa       480
     cctcatcagc gtccgtatcc gtcggttatt aggaccatgg aaacccgttt ggacgagttc       540
     ttgcgtgaag acgaaaggaa ccggagtaag aacgagccgc cgagctacac ctacgatgaa       600
     cttattgaga gggtctatat cggcaccttc cattcggtga acaaggagca ctgcaagcat       660
     ttaatggctc gcaacatcgg caagtcggag aagtacccgg acaagtactt cttctgccgc       720
     gataggcgtc tcaagtttta caactatgcc atcgggtccc aggagctgtg tgtggaaatg       780
     gccaatcgga ttacatgtcc ttacttgttc atcaaggccg cccagtcctc gtatttcgag       840
     gacaagaagt actacgacga ggtgctggat gtgctgttga agaagccgaa ctttgagtac       900
     ctggaggtta atggctcgca ccatgtgcac atgaacgatc cagaggccat cattgcaccg       960
     gtcaacaact ttatccagcg cttcggaccg gcggcagcgg ctgcatcccg ccagaaggcc      1020
     aaggaggcga aggagagcaa gctttag                                          1047
//