ID AAF56973; SV 1; linear; genomic DNA; STD; INV; 819 BP.
XX
PA AE014297.3
XX
PR Project:PRJNA13812;
XX
DT 30-AUG-2006 (Rel. 89, Created)
DT 25-JUN-2024 (Rel. 144, Last updated, Version 25)
XX
DE Drosophila melanogaster (fruit fly) jonah 99Ci
XX
KW .
XX
OS Drosophila melanogaster (fruit fly)
OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC Drosophilidae; Drosophila; Sophophora.
XX
RN [1]
RX DOI; 10.1126/science.287.5461.2185.
RX PUBMED; 10731132.
RA Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
RA Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
RA George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
RA Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., Brandon R.C.,
RA Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C.,
RA Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A.,
RA An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A.,
RA Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V.,
RA Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J.,
RA Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E.,
RA Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B.,
RA Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I.,
RA Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C.,
RA Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S.,
RA Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M.,
RA Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
RA Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D.,
RA Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F.,
RA Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D.,
RA Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A.,
RA Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C.,
RA McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C.,
RA Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L.,
RA Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R.,
RA Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V.,
RA Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
RA Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E.,
RA Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C.,
RA Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A.,
RA Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C.,
RA Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G.,
RA Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.,
RA Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
RT "The genome sequence of Drosophila melanogaster";
RL Science 287(5461):2185-2195(2000).
XX
RN [2]
RX PUBMED; 12537568.
RA Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
RA Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
RA George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
RA Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
RA Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
RA Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
RT "Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster
RT euchromatic genome sequence";
RL Genome Biol 3(12):.
XX
RN [3]
RX PUBMED; 12537572.
RA Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
RA Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
RA Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
RA Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A., Harris N.L.,
RA Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C.,
RA Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.;
RT "Annotation of the Drosophila melanogaster euchromatic genome: a systematic
RT review";
RL Genome Biol 3(12):.
XX
RN [4]
RX PUBMED; 12537573.
RA Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
RA Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M.,
RA Celniker S.E.;
RT "The transposable elements of the Drosophila melanogaster euchromatin: a
RT genomics perspective";
RL Genome Biol 3(12):.
XX
RN [5]
RX PUBMED; 12537574.
RA Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
RA Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
RA Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
RA Karpen G.H.;
RT "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly";
RL Genome Biol 3(12):.
XX
RN [6]
RX PUBMED; 16110336.
RA Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
RA Ashburner M., Anxolabehere D.;
RT "Combined evidence annotation of transposable elements in genome
RT sequences";
RL PLoS Comput Biol 1(2):166-175(2005).
XX
RN [7]
RC Erratum:[Science. 2007 Sep 7;317(5843):1325]
RX DOI; 10.1126/science.1139815.
RX PUBMED; 17569856.
RA Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
RT "The Release 5.1 annotation of Drosophila melanogaster heterochromatin";
RL Science 316(5831):1586-1591(2007).
XX
RN [8]
RX DOI; 10.1126/science.1139816.
RX PUBMED; 17569867.
RA Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
RA Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
RA Dimitri P., Karpen G.H., Celniker S.E.;
RT "Sequence finishing and mapping of Drosophila melanogaster
RT heterochromatin";
RL Science 316(5831):1625-1628(2007).
XX
RN [9]
RX PUBMED; 25589440.
RA Hoskins R.A., Carlson J.W., Wan K.H., Park S., Mendez I., Galle S.E.,
RA Booth B.W., Pfeiffer B.D., George R.A., Svirskas R., Krzywinski M.,
RA Schein J., Accardo M.C., Damia E., Messina G., Mendez-Lago M.,
RA de Pablos B., Demakova O.V., Andreyeva E.N., Boldyreva L.V., Marra M.,
RA Carvalho A.B., Dimitri P., Villasante A., Zhimulev I.F., Rubin G.M.,
RA Karpen G.H., Celniker S.E.;
RT "The Release 6 reference sequence of the Drosophila melanogaster genome";
RL Genome Res 25(3):445-458(2015).
XX
RN [10]
RC Publication Status: Online-Only
RX PUBMED; 26109356.
RG FlyBase Consortium
RA Crosby M.A., Gramates L.S., Dos Santos G., Matthews B.B., St Pierre S.E.,
RA Zhou P., Schroeder A.J., Falls K., Emmert D.B., Russo S.M., Gelbart W.M.;
RT "Gene Model Annotations for Drosophila melanogaster: The Rule-Benders";
RL G3 (Bethesda, Md.) 5(8):1737-1749(2015).
XX
RN [11]
RC Publication Status: Online-Only
RX PUBMED; 26109357.
RG FlyBase Consortium
RA Matthews B.B., Dos Santos G., Crosby M.A., Emmert D.B., St Pierre S.E.,
RA Gramates L.S., Zhou P., Schroeder A.J., Falls K., Strelets V., Russo S.M.,
RA Gelbart W.M.;
RT "Gene Model Annotations for Drosophila melanogaster: Impact of
RT High-Throughput Data";
RL G3 (Bethesda, Md.) 5(8):1721-1736(2015).
XX
RN [12]
RG Berkeley Drosophila Genome Project
RA Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
RA Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C.,
RA Rubin G.;
RT "Drosophila melanogaster release 4 sequence";
RL Unpublished.
XX
RN [13]
RA Adams M.D., Celniker S.E., Gibbs R.A., Rubin G.M., Venter C.J.;
RT ;
RL Submitted (21-MAR-2000) to the INSDC.
RL Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA
XX
RN [14]
RG Drosophila Heterochromatin Genome Project
RA Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
RT ;
RL Submitted (01-AUG-2006) to the INSDC.
RL Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley
RL National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720,
RL USA
XX
RN [15]
RC Direct Submission
RA Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S.,
RA Svirskas R., Karpen G.;
RT ;
RL Submitted (10-AUG-2006) to the INSDC.
RL Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory,
RL One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
XX
RN [16]
RC Direct Submission
RA Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
RA Svirskas R., Rubin G.;
RT ;
RL Submitted (10-AUG-2006) to the INSDC.
RL Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory,
RL One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
XX
RN [17]
RG FlyBase
RA ;
RT ;
RL Submitted (07-OCT-2015) to the INSDC.
RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL Cambridge, MA 02138, USA
XX
RN [18]
RG FlyBase
RA ;
RT ;
RL Submitted (07-DEC-2016) to the INSDC.
RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL Cambridge, MA 02138, USA
XX
RN [19]
RG FlyBase
RA ;
RT ;
RL Submitted (24-MAY-2018) to the INSDC.
RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL Cambridge, MA 02138, USA
XX
RN [20]
RG FlyBase
RA ;
RT ;
RL Submitted (22-APR-2019) to the INSDC.
RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL Cambridge, MA 02138, USA
XX
RN [21]
RG FlyBase
RA ;
RT ;
RL Submitted (20-APR-2020) to the INSDC.
RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL Cambridge, MA 02138, USA
XX
RN [22]
RG FlyBase
RA ;
RT ;
RL Submitted (19-OCT-2022) to the INSDC.
RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL Cambridge, MA 02138, USA
XX
RN [23]
RG FlyBase
RA ;
RT ;
RL Submitted (13-DEC-2023) to the INSDC.
RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL Cambridge, MA 02138, USA
XX
DR MD5; 228439ff1d9998a1cff2c721c389f1a7.
DR BioSample; SAMN02803731.
XX
FH Key Location/Qualifiers
FH
FT source 1..819
FT /organism="Drosophila melanogaster"
FT /chromosome="3R"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:7227"
FT CDS complement(join(AE014297.3:29925299..29925854,
FT AE014297.3:29925912..29926174))
FT /codon_start=1
FT /gene="Jon99Ci"
FT /gene_synonym="143341_at"
FT /gene_synonym="99Calpha"
FT /gene_synonym="CG17951"
FT /gene_synonym="Jon99B"
FT /gene_synonym="Jon99C"
FT /gene_synonym="Jon99C1"
FT /gene_synonym="Jon99C2"
FT /gene_synonym="Jon99Calpha"
FT /gene_synonym="Jon99Calphai"
FT /gene_synonym="Jon99Cbeta"
FT /gene_synonym="Jon99Cbetai"
FT /gene_synonym="JonC"
FT /gene_synonym="SER3"
FT /gene_synonym="SP150"
FT /gene_synonym="Ser99Dc"
FT /gene_synonym="Dmel\CG31039"
FT /gene_synonym="CG31039"
FT /gene_synonym="Ser3"
FT /gene_synonym="ser99Dc"
FT /gene_synonym="JON99CI"
FT /locus_tag="Dmel_CG31039"
FT /product="jonah 99Ci"
FT /EC_number="3.4.21.-"
FT /note="CG31039 gene product from transcript CG31039-RA;
FT CG31039-PA; Jon99Ci-PA; jonah 99C beta; serine protease 3;
FT jonah 99 Ci; jonah 99C alpha"
FT /protein_id="AAF56973.1"
FT /translation="MRGLTLLSLAFLGVCSALTVPHSLVHPRDLEIRHGGIEGRITNGN
FT LASEGQVPYIVGVSLNSNGNWWWCGGSIIGHTWVLTAAHCTAGADEASLYYGAVNYNEP
FT AFRHTVSSENFIRYPHYVGLDHDLALIKTPHVDFYSLVNKIELPSLDDRYNSYENNWVQ
FT AAGWGAIYDGSNVVEDLRVVDLKVISVAECQAYYGTDTASENTICVETPDGKATCQGDS
FT GGPLVTKEGDKLIGITSFVSAYGCQVGGPAGFTRVTKYLEWIKEETGIYY"
XX
SQ Sequence 819 BP; 184 A; 210 C; 233 G; 192 T; 0 other;
atgaggggtc ttacactctt gtcgctcgcc ttccttgggg tctgtagtgc cctaactgtg 60
ccccattcgc tggtccatcc acgcgatctg gagattcgtc atggagggat tgagggtcgt 120
attaccaacg gaaacctggc gtccgagggt caggttccct acatcgtggg tgtgagcttg 180
aacagcaacg gaaactggtg gtggtgcggc ggatccataa tcggacacac ttgggtgctc 240
actgctgccc actgtaccgc tggtgctgat gaggcttcac tgtactatgg tgccgtcaac 300
tacaacgaac ctgccttccg ccacacagtg agcagcgaga acttcatcag atatccccac 360
tacgttggac tcgatcatga tttggccctg atcaagactc cccatgtgga cttctacagc 420
ctggtcaaca aaatagagct tcccagcctg gatgaccgat acaactctta cgaaaacaat 480
tgggttcagg ccgccggatg gggtgccatt tacgatggca gcaatgtggt ggaggatctg 540
cgagtggtgg atctgaaagt gatctccgtg gcggagtgcc aggcttacta cggaactgat 600
accgcctccg agaacaccat ctgtgtggaa actccggacg gaaaggccac ctgccagggt 660
gattctggtg gtcctctggt cacaaaggag ggtgataagc ttatcggaat cacttccttc 720
gtctccgctt acggatgcca ggttggagga ccggctggct tcactagggt caccaagtac 780
ctggaatgga taaaggagga gactggaatc tattattaa 819
//