ID   AAR01190; SV 1; linear; genomic DNA; STD; VRL; 1487 BP.
XX
PA   AY334293.1
XX
DT   20-APR-2005 (Rel. 83, Created)
DT   20-APR-2005 (Rel. 83, Last updated, Version 1)
XX
DE   Human immunodeficiency virus 1 partial gag protein
XX
KW   .
XX
OS   Human immunodeficiency virus 1
OC   Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
XX
RN   [1]
RP   1-1487
RX   DOI; 10.1089/aid.2005.21.239.
RX   PUBMED; 15795531.
RA   Currier J.R., Harris M.E., Cox J.H., McCutchan F.E., Birx D.L., Maayan S.,
RA   Ferrari G.;
RT   "Immunodominance and cross-reactivity of B5703-restricted CD8 T lymphocytes
RT   from HIV type 1 subtype C-infected Ethiopians";
RL   AIDS Res. Hum. Retroviruses 21(3):239-245(2005).
XX
RN   [2]
RP   1-1487
RA   Currier J.R., Harris M.E., Ferrari G., Maayan S., Cox J.H., McCutchan F.E.,
RA   Birx D.L.;
RT   ;
RL   Submitted (02-JUL-2003) to the INSDC.
RL   The Henry M. Jackson Foundation, 13 Taft Court, Rockville, MD 20850, USA
XX
DR   MD5; ce59685725aae4cef5ac8db271502f1e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1487
FT                   /organism="Human immunodeficiency virus 1"
FT                   /isolate="02ET700.287.369"
FT                   /mol_type="genomic DNA"
FT                   /country="Ethiopia"
FT                   /proviral
FT                   /db_xref="taxon:11676"
FT   CDS             AY334293.1:<1..1487
FT                   /codon_start=3
FT                   /gene="gag"
FT                   /product="gag protein"
FT                   /db_xref="GOA:Q53E11"
FT                   /db_xref="InterPro:IPR000071"
FT                   /db_xref="InterPro:IPR000721"
FT                   /db_xref="InterPro:IPR001878"
FT                   /db_xref="InterPro:IPR008916"
FT                   /db_xref="InterPro:IPR008919"
FT                   /db_xref="InterPro:IPR010999"
FT                   /db_xref="InterPro:IPR012344"
FT                   /db_xref="InterPro:IPR014817"
FT                   /db_xref="InterPro:IPR036875"
FT                   /db_xref="UniProtKB/TrEMBL:Q53E11"
FT                   /protein_id="AAR01190.1"
FT                   /translation="ARASILRGGKLDTWEKIRLRPGGKKHYMLKHLVWASRELERFALN
FT                   PDLLETSEGCKQIINQLQPALQTGTEGLRSLFNTVATLYCVHKNIAVKDTKEALDRIEE
FT                   EQNKSQQTTQQAKAADGKVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKGFNPEV
FT                   IPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPVAPGQ
FT                   MREPRGSDIAGTTSNLQEQITWMTSNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIK
FT                   QGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRALGPGASLEE
FT                   MMTACQGVGGPGHKARVLAEAMSQANNINIMMQRSNFKGPRRIIKCFNCGKEGHIARNC
FT                   RAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPVESFR
FT                   FEETTPSPKQEPKDKEPCKEPLTALKSLFGSDPLSQ"
XX
SQ   Sequence 1487 BP; 544 A; 295 C; 356 G; 292 T; 0 other;
     gtgcgagagc gtcaatatta agagggggaa aattagatac gtgggaaaaa attaggttaa        60
     ggccaggggg aaagaaacac tatatgctaa aacacctagt atgggcaagc agggagctgg       120
     aaagatttgc acttaaccct gaccttttag agacatcaga gggctgtaaa caaataataa       180
     accagctaca accagctctt cagacaggaa cagagggact tagatcatta tttaacacag       240
     tggcaactct ctattgtgta cataaaaaca tagcggtaaa agacaccaaa gaagccttgg       300
     acaggataga ggaagaacaa aataaaagtc agcaaacaac acagcaggca aaagcggctg       360
     acgggaaagt cagtcaaaat tatcctatag tgcagaatct ccaagggcaa atggtacacc       420
     aacctctatc acctagaact ttaaatgcat gggtaaaagt aatagaggag aagggtttca       480
     atccagaggt aatacccatg tttacagcat tatcagaagg agccacccca caagatctaa       540
     acaccatgtt aaatacagtg gggggacatc aagcagccat gcaaatgcta aaagatacca       600
     tcaatgagga ggctgcagaa tgggataggt tacatccagt acatgcaggg cctgttgcac       660
     ccggccaaat gagagaacca aggggaagtg acatagcagg aactactagt aaccttcagg       720
     aacaaataac atggatgaca agtaacccac ctattccagt gggagacatt tataaaagat       780
     ggataattct gggattaaat aaaatagtaa gaatgtacag ccctgtcagc attttggaca       840
     taaaacaagg accaaaggaa ccctttagag actatgtaga ccggttcttt aaaaccttaa       900
     gagctgaaca agctacacaa gatgtaaaaa attggatgac cgacaccttg ttggtccaaa       960
     atgcgaaccc agattgcaag accattttaa gagcattagg gccaggggct tcattagaag      1020
     aaatgatgac agcatgtcag ggagtgggag gacctggcca caaagcaaga gtcttggctg      1080
     aggcaatgag ccaagcaaac aatataaaca ttatgatgca gagaagcaat tttaagggtc      1140
     ctagaagaat tattaaatgt ttcaattgtg gcaaggaagg gcacatagct agaaattgca      1200
     gggctcctag gaaaaaaggc tgttggaaat gtggaaagga aggacaccaa atgaaagact      1260
     gtactgaaag gcaggctaat tttttaggga aaatttggcc ttcccacaag gggaggccag      1320
     ggaatttcct tcagagcaga ccagagccaa cagccccacc agtagagagc ttcaggttcg      1380
     aggagacaac cccctctccg aagcaggagc cgaaagacaa ggaaccctgc aaggagccct      1440
     taactgccct caaatcactc tttggcagcg accccttgtc tcaataa                    1487
//