ID AB360990; SV 1; linear; genomic DNA; STD; INV; 3078 BP. XX AC AB360990; XX DT 15-SEP-2007 (Rel. 93, Created) DT 10-MAY-2009 (Rel. 100, Last updated, Version 2) XX DE Culicoides jacobsoni mitochondrial cox1, nd2, cox2 genes for cytochrome c DE oxidase subunit I, NADH dehydrogenase subunit 2, cytochrome c oxidase DE subunit II, partial cds, clone: Kag14_1. XX KW . XX OS Culicoides jacobsoni OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; OC Neoptera; Holometabola; Diptera; Nematocera; Chironomoidea; OC Ceratopogonidae; Ceratopogoninae; Culicoides; Avaritia. OG Mitochondrion XX RN [1] RP 1-3078 RA Matsumoto Y.; RT ; RL Submitted (11-SEP-2007) to the INSDC. RL Contact:Yukiko Matsumoto National Institute of Agricultural Sciences, RL Insect-Microbe Research Unit; Owashi1-2, Tsukuba, Ibaraki 305-8634, Japan XX RN [2] RX DOI; 10.1111/j.1365-2915.2008.00789.x. RX PUBMED; 19239613. RA Matsumoto Y., Yanase T., Tsuda T., Noda H.; RT "Species-specific mitochondrial gene rearrangements in biting midges and RT vector species identification"; RL Med. Vet. Entomol. 23(1):47-55(2009). XX DR MD5; 8a6830258c2131d03db5ef9129b40490. XX FH Key Location/Qualifiers FH FT source 1..3078 FT /organism="Culicoides jacobsoni" FT /organelle="mitochondrion" FT /mol_type="genomic DNA" FT /country="Japan:Kagoshima" FT /collection_date="30-Jul-2004" FT /clone="Kag14_1" FT /db_xref="taxon:469751" FT CDS <1..1297 FT /codon_start=2 FT /transl_table=5 FT /gene="cox1" FT /product="cytochrome c oxidase subunit I" FT /note="putative" FT /db_xref="GOA:A8B0Q1" FT /db_xref="InterPro:IPR000883" FT /db_xref="InterPro:IPR023615" FT /db_xref="InterPro:IPR023616" FT /db_xref="InterPro:IPR033944" FT /db_xref="InterPro:IPR036927" FT /db_xref="UniProtKB/TrEMBL:A8B0Q1" FT /protein_id="BAF80243.1" FT /translation="PLMLGAPDMAFPRMNNMSFWMLPPSLTLLLISSFVENGVGTGWTV FT YPPLSTNISHAGASVDLAIFSLHLAGISSILGAVNFITTIVNMRPNEMIPEFMPLFVWS FT VLITAVLLLLSLPVLAGAITMLLMDRNINTSFFDPSGGGDPILYQHLFWFFGHPEVYIL FT ILPGFGIISHIVLHESGKKIAFGALGMIYAMITIGILGFIVWAHHMFTVGMDVDTRAYF FT TSATMIIAIPTGIKIFSWIATFQGSNLNLSTSLLWTLGFLFLFTVGGLTGVILANSSLD FT IVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWYPLFTGLNLNSMMMKFQFWMMFLGVNL FT TFFPQHFLGLSGMPRRYSDYPDSYISWNIISTLGSTISFFSIFFLMFLIWESMITNRSI FT LYPIYLSSSIEWHQCLPPLEHSYNEMPIMYTK" FT CDS <1406..2422 FT /codon_start=1 FT /transl_table=5 FT /gene="nd2" FT /product="NADH dehydrogenase subunit 2" FT /note="putative; translation start site undetermined" FT /db_xref="GOA:A8B0Q2" FT /db_xref="InterPro:IPR001750" FT /db_xref="InterPro:IPR003917" FT /db_xref="UniProtKB/TrEMBL:A8B0Q2" FT /protein_id="BAF80244.1" FT /translation="INNLFSKTIFFMILMISTLLTISSSSWIGMWMGLELNLLSFIPLL FT IINNNISSTESAIKYFLYQTFASLIFLFFSMIYIMKITFFNYFIFNMEIHYIVMSMNLK FT LVTPMFNMIENLTWFNTLIMLTWQKLAPLVVISYMTMYNYLMLFMMACCLIGAVGGLIQ FT TSMQKLLVYSSMNHLGWLFIAQIYNNYLWLTYFLIYTIITISIISMLKIFNIFNFNQLF FT FFNNNNNFNILMKIFLFMNLLSLGGLPPFLGFFPKLMVIEHMMKSNFYLLMLGLIFCSL FT FTLYYYIRLSFSAFMMNYMSMKWFFYSFNKFYMYIYMIFINFINLFMIWYIVFLNYF" FT CDS 2494..>3078 FT /codon_start=1 FT /transl_table=5 FT /gene="cox2" FT /product="cytochrome c oxidase subunit II" FT /note="putative" FT /db_xref="GOA:A8B0Q3" FT /db_xref="InterPro:IPR002429" FT /db_xref="InterPro:IPR008972" FT /db_xref="InterPro:IPR011759" FT /db_xref="InterPro:IPR036257" FT /db_xref="UniProtKB/TrEMBL:A8B0Q3" FT /protein_id="BAF80245.1" FT /translation="MATWGHLMLLESNSSTMEEMILFHDYTLTFMLGIIMFVAWLLFNM FT IINKLNTKFIMMSHKIEIAWTTIPALILILIAFPSIKLLYLMDEMDNPSVSIKVIGNQW FT FWTYEYSDYENINSFDSYLIPTNKLMNEEFRLLDVDHRLIIPTNTQIRLIITALDVLHS FT WTIPSLGIKLDATPGRLNQMQIHARRSGLYYG" XX SQ Sequence 3078 BP; 1081 A; 348 C; 290 G; 1359 T; 0 other; tcctttaata ttaggagctc ctgatatagc tttccctcga ataaataata taagattttg 60 aatattaccc ccttctttaa ctctattact tattagaagt tttgttgaaa atggagtagg 120 aacaggatga acagtttatc cacctctttc tactaatatt tctcatgcag gagcttctgt 180 tgatttagct attttttcat tacatttagc cggaattagt tctattttag gagctgttaa 240 ttttattact acaattgtaa atatacgtcc taatgaaata attccagaat ttataccatt 300 atttgtttga tctgtattaa ttactgctgt attattatta ttatcattac cagtattagc 360 tggagctatt acaatattat taatagaccg taatattaat acttcatttt ttgatccaag 420 aggaggtgga gatccaattt tatatcaaca tcttttttga ttttttggtc atcctgaagt 480 ttatatttta attttaccag gatttggaat tatttctcat atcgtattac atgaaagagg 540 aaaaaaaatt gcttttggag cattaggaat aatttatgct ataattacta ttggaatttt 600 aggttttatt gtatgagctc atcatatatt tacagttgga atagatgtag atactcgagc 660 atattttaca tcagctacta taattattgc tattcctaca ggaattaaaa tttttagatg 720 aattgctacc tttcaaggta gaaatttaaa tctttctact tctttacttt gaactttagg 780 atttttattt ttatttacag taggtggact gacaggagta attctagcta attcttctct 840 tgatattgta ttacatgata cttattatgt agttgctcat tttcattatg ttttatcaat 900 aggagcagta ttcgcaatta taggagggtt tattcattga tatcctttat ttacaggatt 960 aaatttaaat tctataatga taaaatttca attttgaata atatttttag gtgtaaattt 1020 aacatttttc cctcaacatt ttttaggttt aagaggaata cctcgtcgat attctgacta 1080 tcctgattct tatatttcat gaaatattat ttcaacatta ggatcaacaa tttctttttt 1140 tagaattttt tttttgatat ttttaatttg agaaagaata attactaatc gttcaattct 1200 ttatcctatt tatttatctt cttctattga atgacaccaa tgtttaccac ctttagaaca 1260 ttcttataat gaaataccaa ttatatatac aaaataatta tttaactaat aatataaata 1320 tatatataca tattataaaa ttaaaaaaat atatctatat attataaata taaaaatttt 1380 attaattttt attaataata aataaattaa taatttattt tctaaaacaa ttttttttat 1440 aattttaata attagaactt tactaactat ttcttcttct tcttgaattg gtatatgaat 1500 aggattagaa ttaaatcttt tatcctttat tcctttatta attattaata ataatattag 1560 ctcaacagaa tcagcaatta aatatttttt ataccaaact tttgcttctt taattttttt 1620 atttttttct ataatttata ttataaaaat tacatttttt aattatttta tttttaatat 1680 agaaatccat tacattgtaa tatcaataaa tttaaaactt gtaacaccaa tatttaatat 1740 aattgaaaat ttaacttgat ttaatacatt aattatatta acttgacaaa aattagctcc 1800 tcttgttgtc atttcttaca taacaatata taattattta atattattta taatagcttg 1860 ttgtcttatc ggagcagtag gtggattaat tcaaacttca atacaaaaat tattagtata 1920 ttcttctata aatcatcttg gatgattatt tattgctcaa atttataata attatttatg 1980 attaacttat tttttaattt acactattat tactatctca attattagta tattaaaaat 2040 ttttaatatt tttaatttta atcaattatt tttttttaat aataataata atttcaatat 2100 tttaataaaa atttttttat ttataaattt actttcatta ggaggacttc ctccttttct 2160 tggatttttc cctaaattaa tagtaattga acatataata aaatcaaatt tttatttatt 2220 aatattagga ttaatttttt gctctttatt tactttatac tattatattc gattatcatt 2280 ttctgctttt ataataaatt atatatctat aaaatgattt ttttattcat tcaataaatt 2340 ttatatatat atttatataa tttttattaa ctttattaat ctatttataa tttgatatat 2400 tgttttttta aattattttt aaaaaaaaat tacaaattta atataaatta attcaaatag 2460 agattataaa atagaataaa ttaaatttca ttaatggcaa catgaggaca tttaatatta 2520 ttagaaagta attcttctac aatagaagaa ataattcttt ttcatgacta tacacttaca 2580 tttatactag gtattattat atttgttgca tgattgttat ttaatataat tattaataaa 2640 ttgaatacta aatttattat aatatctcat aaaattgaaa ttgcttgaac tacaattcct 2700 gcccttattt taattcttat tgcttttcct tctattaaat tattatatct aatagatgaa 2760 atagataatc cttctgttag aattaaagta attgggaatc aatgattttg aacatatgaa 2820 tattcagact atgaaaatat taatagattt gattcttatt taattcctac taataaatta 2880 ataaatgaag aatttcgttt attagatgta gatcatcgat taattattcc tacaaacaca 2940 caaattcgat taattattac agcattagat gttttacatt cttgaactat tccctcttta 3000 ggaatcaaat tagatgctac tccaggtcga ttaaatcaaa tacaaatcca tgcccgacga 3060 tcaggtttat attatggt 3078 //