ID AEE80059; SV 2; linear; genomic DNA; STD; PLN; 822 BP.
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PA CP002686.1
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PR Project:PRJNA116;
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DT 13-MAY-2011 (Rel. 108, Created)
DT 29-JUN-2017 (Rel. 133, Last updated, Version 6)
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DE Arabidopsis thaliana (thale cress) phosphoglycerate mutase family protein
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KW .
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OS Arabidopsis thaliana (thale cress)
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
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RN [1]
RX DOI; 10.1038/35048706.
RX PUBMED; 11130713.
RG European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M.,
RA Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N.,
RA Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L.,
RA Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S.,
RA Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N.,
RA Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P.,
RA Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S.,
RA Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S.,
RA Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana";
RL Nature 408(6814):820-822(2000).
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RN [2]
RG TAIR
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RT ;
RL Submitted (18-FEB-2011) to the INSDC.
RL Department of Plant Biology, Carnegie Institution, 260 Panama Street,
RL Stanford, CA, USA
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RN [3]
RC Protein update by submitter
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RT ;
RL Submitted (17-MAY-2016) to the INSDC.
RL Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr,
RL Rockville, MD 20850, USA
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DR MD5; c7997e04c175b84b278d285851b68bd9.
DR BioSample; SAMN03081427.
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FH Key Location/Qualifiers
FH
FT source 1..822
FT /organism="Arabidopsis thaliana"
FT /chromosome="3"
FT /ecotype="Columbia"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:3702"
FT CDS join(CP002686.1:22336068..22336445,
FT CP002686.1:22336696..22336854,
FT CP002686.1:22336948..22337056,
FT CP002686.1:22337155..22337330)
FT /codon_start=1
FT /locus_tag="AT3G60420"
FT /product="phosphoglycerate mutase family protein"
FT /note="Phosphoglycerate mutase family protein; CONTAINS
FT InterPro DOMAIN/s: Histidine phosphatase superfamily,
FT clade-1 (InterPro:IPR013078), PRIB5 (InterPro:IPR012398);
FT BEST Arabidopsis thaliana protein match is:
FT Phosphoglycerate mutase family protein (TAIR:AT3G60450.1);
FT Has 266 Blast hits to 264 proteins in 108 species: Archae
FT -0; Bacteria - 75; Metazoa - 4; Fungi - 55; Plants - 65;
FT Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink)."
FT /db_xref="EnsemblGenomes-Gn:AT3G60420"
FT /db_xref="InterPro:IPR012398"
FT /db_xref="InterPro:IPR013078"
FT /db_xref="InterPro:IPR029033"
FT /db_xref="UniProtKB/TrEMBL:F4JBT8"
FT /inference="similar to RNA sequence,
FT EST:INSD:EH951730.1,INSD:EH880325.1,INSD:EL156647.1,
FT INSD:EL034872.1,INSD:AU231287.1,INSD:EH857212.1,
FT INSD:EL055984.1,INSD:EG492131.1,INSD:EL126417.1,
FT INSD:BP837685.1,INSD:EL000603.1,INSD:CB254347.1,
FT INSD:BP866917.1,INSD:EL328162.1,INSD:EL005118.1,
FT INSD:EL033640.1,INSD:EL309312.1,INSD:DR216993.1,
FT INSD:BP659335.1,INSD:EL212832.1,INSD:AU239928.2,
FT INSD:BP624125.1,INSD:H36159.1,INSD:EH887251.1,
FT INSD:EH811790.1,INSD:BP796510.1,INSD:EG492132.1,
FT INSD:DR374774.1,INSD:DR216994.1,INSD:EL100306.1"
FT /inference="similar to RNA sequence,
FT mRNA:INSD:AK119045.1,INSD:BT006233.1,INSD:BT014725.1,
FT INSD:AY087075.1"
FT /protein_id="AEE80059.2"
FT /translation="MVFLIACNILYLHHAMKQQETEQMKSKSNMDGHQHVFMMRHGDRI
FT DKFEPQWVSTAARPWDPPLIQGGMFRAFRTGQMIRSQIHFPIHRVFVSPFLRCIQTASE
FT VIAALSDPDANSSDSFDKPKLKVSIEFGLSEMLNSIAFKPEVAPKDGKFDFKISELEAM
FT FPDGMVDHNVDPVYKEMPQWEETLESCNNRYVNLVKTLADKYPCENLLLVTHREGVSFT
FT YATFYKEATHRLDFCACVELQRQISSSEVGDFEVVTSHGQDGIMYPPSNSG"
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SQ Sequence 822 BP; 223 A; 184 C; 175 G; 240 T; 0 other;
atggtcttct taattgcatg taatatacta tacttgcatc acgccatgaa gcagcaagaa 60
acagagcaaa tgaagtctaa atcaaacatg gatggccacc aacatgtttt catgatgcgc 120
catggcgatc gcattgataa gtttgagcca caatgggtct cgactgctgc tcggccttgg 180
gatccaccgc ttattcaagg cggcatgttt cgagcgtttc gaaccggtca gatgatccga 240
tctcagatcc attttcccat tcaccgtgtc tttgtctccc ctttcctccg ctgcatccaa 300
accgcttccg aagttatcgc cgccctttct gaccccgacg caaattcgtc tgattccttc 360
gacaaaccta agctcaaggt ttctattgaa tttggcttga gcgagatgct gaactcaatc 420
gcttttaagc ctgaagttgc tccaaaagat ggcaaatttg atttcaagat ttcagaactt 480
gaagctatgt ttcctgatgg aatggtggat cataatgtag acccggttta caaagagatg 540
ccacaatggg aagagacttt ggaaagttgc aacaatcgat atgttaattt ggtcaagact 600
cttgctgata agtatccttg tgagaatctg ttgttagtca ctcacagaga aggagtaagc 660
tttacatatg ccacattcta taaagaggca acgcacaggt tagatttttg tgcttgtgtt 720
gaactacaaa gacagatctc ctctagtgaa gttggagatt ttgaagtcgt tacaagtcat 780
ggtcaagatg gtatcatgta ccctccctct aactccggtt aa 822
//