ID AEG77033; SV 1; linear; genomic RNA; STD; VRL; 3267 BP. XX PA JF304926.1 XX DT 05-JUN-2011 (Rel. 109, Created) DT 11-SEP-2011 (Rel. 110, Last updated, Version 2) XX DE Human rotavirus A RNA-dependent RNA polymerase XX KW . XX OS Human rotavirus A OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Rotavirus; Rotavirus A. XX RN [1] RX DOI; 10.1099/vir.0.033001-0. RX PUBMED; 21613446. RA Ghosh S., Adachi N., Gatheru Z., Nyangao J., Yamamoto D., Ishino M., RA Urushibara N., Kobayashi N.; RT "Whole-genome analysis reveals the complex evolutionary dynamics of Kenyan RT G2P[4] human rotavirus strains"; RL J. Gen. Virol. 92(Pt 9):2201-2208(2011). XX RN [2] RA Ghosh S., Kobayashi N.; RT ; RL Submitted (07-FEB-2011) to the INSDC. RL Department of Hygiene, Sapporo Medical University School of Medicine, S-1 RL W-17, Chuo Ku, Sapporo, Hokkaido 0608556, Japan XX DR MD5; 32c9ca769a3424853b53572315b6e9d7. XX FH Key Location/Qualifiers FH FT source 1..3267 FT /organism="Human rotavirus A" FT /host="Homo sapiens" FT /strain="AK26" FT /mol_type="genomic RNA" FT /country="Kenya" FT /collection_date="Jul-1982" FT /db_xref="taxon:10941" FT CDS JF304926.1:19..3285 FT /codon_start=1 FT /gene="VP1" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:F6LP41" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007097" FT /db_xref="InterPro:IPR022071" FT /db_xref="InterPro:IPR042032" FT /db_xref="UniProtKB/TrEMBL:F6LP41" FT /protein_id="AEG77033.1" FT /translation="MGKYNLILSEYLSFIYDSQSAVQIPIYYSSNSELESRCIEFHSKC FT LENSKNGLSLKKLFIEYNDVIENATLLSILSYSYDKYNAVERKLVKYARGKPLEADLTV FT NELDYENNKITSELFPTAEEYTDSLMDPAILTSLSSNLNAVMFWLEKHENDTAEKLKIY FT KRRSDLFTIVASTVNKYGVPRHNAKYRYEYDVMKDKPYYLVTWANSSIEMLMSVFSHED FT YLIARELIVLSYSNRSTLAKLVSSPMSILVALVDINGTFITNEELELEFSNKYVRAIVP FT DQTFDELNQMLDNMRKAGLVDIPKMIQDWLTNCSIEKFPLMAKIYSWSFHVGFRKQKML FT DAALDQLKTEYTEDVDEEMYREYTMLIRDEVVKMLEEPVKHDDHLLQDSELAGLLSMSS FT ASNGESRQLKFGRKTIFSTKKNMHVMDDMANGRYTPGIIPPVNVDKPIPLGRRDVPGRR FT TRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSYGDVTRFLSNNAMVL FT YTDVSQWDSSQHNTQPFRKGIIMGLDILANMTNDARVIQTLNLYKQTQINLMDSYVQIP FT DGNVIKKIQYGAVASGEKQTKAANSIANLALIKTVLSRISNKYSFATKIIRVDGDDNYA FT VLQFNTEVTKQMIQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKIFFRAGIN FT LLNNEKRGQSTQWDQAAVLYSNYIVNRLRGFETDREFILTKIMQMTSVAITGSLRLFPS FT ERVLTTNSTFKVFDSEDFIIEYGTTDDEVYIQRAFMSLSSQRSGIADEIAASTTFKNYV FT SKLSEQLLFSKNNIVSRGIALTEKAKLNSYAPISLEKRRAQISALLTMLQKPVTFKSSK FT ITINDILGDIKPFFTISEAHLPIQYQKFMPTLPENVQYIIQCIGSRTYQIEDDGSKSAI FT SRLISKYSVYKPSIEELYKVISLHENEIQLYLISLGIPKIDADTYVGSKIYSQDKYRIL FT ESYVYNLLSINYGCYQLFDFNSPDLEKLIRIPFKGKIPAVTFILHLYAKLEVINYAIKN FT GSWISVFCNYPKSEMIKLWKKMWNITSLRSPYSNANFFQD" XX SQ Sequence 3267 BP; 1255 A; 485 C; 579 G; 948 T; 0 other; atggggaagt ataatctaat cttgtcagaa tatttatcat ttatatacga ttcacaatct 60 gcagttcaaa ttccgattta ttattcttcc aatagtgaac tggaaagtag atgtattgaa 120 tttcattcta aatgtttgga aaattcaaaa aatggactgt cactaaagaa actcttcata 180 gaatacaatg acgttataga aaatgctaca ttgctatcaa ttctatcata ctcatatgat 240 aaatacaatg ctgttgaaag aaaattagtt aagtatgcaa gagggaaacc attagaagca 300 gatttaacag taaatgaatt agattatgaa aataataaaa taacctctga gctatttcca 360 acagcggaag agtacaccga ttcactaatg gatccagcga ttctaacgtc cttgtcatcc 420 aatttaaatg cagttatgtt ctggttagaa aaacatgaaa atgatacagc tgaaaagctt 480 aagatttata aaagaagatc agatttattt actatagttg catcaacagt gaataaatac 540 ggtgtgccaa gacataacgc aaaatataga tatgaatatg atgtgatgaa ggacaaacca 600 tattacttag taacatgggc gaactcttca attgagatgt tgatgtcggt tttttctcac 660 gaggactatt taattgcgag agaactgata gtactatcat attctaatag atcgactctg 720 gcgaaattag tctcatcacc gatgtcaatt cttgtagcat tagtagatat taatggaacg 780 ttcattacaa acgaagagtt agaattagaa ttttcaaaca aatatgtacg agccatagtg 840 ccggatcaaa catttgatga actaaaccaa atgcttgata atatgagaaa agctggatta 900 gttgatatac caaaaatgat acaggattgg ttgacaaatt gttctatcga aaaatttcca 960 ttaatggcta aaatatattc atggtcattt cacgttggat ttagaaaaca aaaaatgttg 1020 gatgctgcgt tagatcaatt gaaaactgaa tatacagaag atgtggatga agaaatgtat 1080 cgcgaataca caatgctaat aagagatgaa gttgtcaaaa tgcttgagga accggtgaaa 1140 catgatgatc acttattaca ggattctgaa ttagctggtt tactatcaat gtcatcagca 1200 tcaaatggtg agtccagaca gcttaaattt ggtagaaaaa caattttttc aaccaaaaag 1260 aatatgcacg tgatggatga tatggctaat ggaagatata caccaggtat aataccacca 1320 gtaaatgttg acaaaccaat tccattaggg aggagagatg taccgggaag aagaaccaga 1380 atcatattta tattgccata tgagtatttt atagcgcaac acgctgtagt tgaaaaaatg 1440 ttaatatatg caaaacacac tagagaatat gctgagtttt attcacaatc gaatcagcta 1500 ctatcatacg gtgatgttac gcgatttcta tctaataatg ccatggtgct atatacagat 1560 gtatctcaat gggattcatc ccagcacaat acgcaaccat tcaggaaggg aataataatg 1620 ggattagata tattagccaa catgactaat gatgctagag ttattcagac actaaatttg 1680 tataaacaaa cacagattaa tttaatggat tcatacgttc aaataccaga tggtaacgtt 1740 attaagaaaa tacaatatgg agctgtagca tcaggagaaa agcagacgaa agcagcgaat 1800 tcaatagcaa acctggcact gattaaaaca gttctatcac gtatatctaa taaatactca 1860 tttgccacaa agataataag agttgatggt gatgacaact acgccgtatt gcaatttaat 1920 acagaagtga ctaaacagat gattcaagat gtatcaaatg acgtaagaga aacttatgca 1980 cgtatgaatg ctaaagttaa agctttagtg tccacagtag gaatagagat agctaaaagg 2040 tatattgcag gtggaaagat attttttaga gcaggaataa atctacttaa caatgaaaag 2100 agaggacaga gtacacaatg ggaccaagca gcggttctat actcaaatta cattgtgaat 2160 agacttcgag ggtttgaaac tgatagagaa tttatactga ccaaaataat gcaaatgacg 2220 tcggttgcta tcactggatc attaagactt ttcccttcgg aacgtgtatt gaccacaaat 2280 tctacattta aagtatttga ttcagaagac tttattatag aatatgggac aactgacgat 2340 gaagtgtata tacaaagagc gttcatgtca ctatcaagtc aaagatcggg aatagctgat 2400 gaaatagctg catcaacaac atttaaaaat tacgtatcaa aactatcaga gcagttactt 2460 ttttcaaaga acaatatagt atccagggga atagctttga ctgagaaagc gaaattgaat 2520 tcatatgcac caatatcact tgaaaagaga cgtgcacaga tatcagcact actaacaatg 2580 ttacagaaac cagttacatt taaatcaagt aaaataacaa taaatgatat acttggagat 2640 ataaaaccat tttttacgat aagtgaagca catttaccga tacagtatca gaaatttatg 2700 ccaacattac cagaaaacgt acaatatata attcagtgca taggatcaag aacttatcaa 2760 attgaagatg acggctcaaa gtcagcaata tctcgtttaa tatcaaaata ttcagtttat 2820 aaaccgtcaa ttgaagagct gtataaagta atttcattac atgaaaatga aatacaatta 2880 tatttaattt cactaggcat accaaaaata gatgctgata catatgtagg atcaaagatc 2940 tattctcaag ataagtatag gatactagaa tcatacgtgt ataacctatt atctattaat 3000 tatggatgtt atcaattatt tgactttaat tcaccagatt tagaaaagtt aatcagaata 3060 ccgtttaagg gaaagatacc agctgttact ttcatactgc atttgtatgc taaactagaa 3120 gttataaatt acgctattaa gaatggttca tggataagtg tgttctgtaa ttatccaaaa 3180 tcggaaatga taaaactatg gaagaaaatg tggaacatta catcgttgcg atcaccatat 3240 tctaatgcga atttctttca agattag 3267 //