ID   AEG77033; SV 1; linear; genomic RNA; STD; VRL; 3267 BP.
XX
PA   JF304926.1
XX
DT   05-JUN-2011 (Rel. 109, Created)
DT   11-SEP-2011 (Rel. 110, Last updated, Version 2)
XX
DE   Human rotavirus A RNA-dependent RNA polymerase
XX
KW   .
XX
OS   Human rotavirus A
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Rotavirus; Rotavirus A.
XX
RN   [1]
RX   DOI; 10.1099/vir.0.033001-0.
RX   PUBMED; 21613446.
RA   Ghosh S., Adachi N., Gatheru Z., Nyangao J., Yamamoto D., Ishino M.,
RA   Urushibara N., Kobayashi N.;
RT   "Whole-genome analysis reveals the complex evolutionary dynamics of Kenyan
RT   G2P[4] human rotavirus strains";
RL   J. Gen. Virol. 92(Pt 9):2201-2208(2011).
XX
RN   [2]
RA   Ghosh S., Kobayashi N.;
RT   ;
RL   Submitted (07-FEB-2011) to the INSDC.
RL   Department of Hygiene, Sapporo Medical University School of Medicine, S-1
RL   W-17, Chuo Ku, Sapporo, Hokkaido 0608556, Japan
XX
DR   MD5; 32c9ca769a3424853b53572315b6e9d7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3267
FT                   /organism="Human rotavirus A"
FT                   /host="Homo sapiens"
FT                   /strain="AK26"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya"
FT                   /collection_date="Jul-1982"
FT                   /db_xref="taxon:10941"
FT   CDS             JF304926.1:19..3285
FT                   /codon_start=1
FT                   /gene="VP1"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:F6LP41"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="InterPro:IPR007097"
FT                   /db_xref="InterPro:IPR022071"
FT                   /db_xref="InterPro:IPR042032"
FT                   /db_xref="UniProtKB/TrEMBL:F6LP41"
FT                   /protein_id="AEG77033.1"
FT                   /translation="MGKYNLILSEYLSFIYDSQSAVQIPIYYSSNSELESRCIEFHSKC
FT                   LENSKNGLSLKKLFIEYNDVIENATLLSILSYSYDKYNAVERKLVKYARGKPLEADLTV
FT                   NELDYENNKITSELFPTAEEYTDSLMDPAILTSLSSNLNAVMFWLEKHENDTAEKLKIY
FT                   KRRSDLFTIVASTVNKYGVPRHNAKYRYEYDVMKDKPYYLVTWANSSIEMLMSVFSHED
FT                   YLIARELIVLSYSNRSTLAKLVSSPMSILVALVDINGTFITNEELELEFSNKYVRAIVP
FT                   DQTFDELNQMLDNMRKAGLVDIPKMIQDWLTNCSIEKFPLMAKIYSWSFHVGFRKQKML
FT                   DAALDQLKTEYTEDVDEEMYREYTMLIRDEVVKMLEEPVKHDDHLLQDSELAGLLSMSS
FT                   ASNGESRQLKFGRKTIFSTKKNMHVMDDMANGRYTPGIIPPVNVDKPIPLGRRDVPGRR
FT                   TRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSYGDVTRFLSNNAMVL
FT                   YTDVSQWDSSQHNTQPFRKGIIMGLDILANMTNDARVIQTLNLYKQTQINLMDSYVQIP
FT                   DGNVIKKIQYGAVASGEKQTKAANSIANLALIKTVLSRISNKYSFATKIIRVDGDDNYA
FT                   VLQFNTEVTKQMIQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKIFFRAGIN
FT                   LLNNEKRGQSTQWDQAAVLYSNYIVNRLRGFETDREFILTKIMQMTSVAITGSLRLFPS
FT                   ERVLTTNSTFKVFDSEDFIIEYGTTDDEVYIQRAFMSLSSQRSGIADEIAASTTFKNYV
FT                   SKLSEQLLFSKNNIVSRGIALTEKAKLNSYAPISLEKRRAQISALLTMLQKPVTFKSSK
FT                   ITINDILGDIKPFFTISEAHLPIQYQKFMPTLPENVQYIIQCIGSRTYQIEDDGSKSAI
FT                   SRLISKYSVYKPSIEELYKVISLHENEIQLYLISLGIPKIDADTYVGSKIYSQDKYRIL
FT                   ESYVYNLLSINYGCYQLFDFNSPDLEKLIRIPFKGKIPAVTFILHLYAKLEVINYAIKN
FT                   GSWISVFCNYPKSEMIKLWKKMWNITSLRSPYSNANFFQD"
XX
SQ   Sequence 3267 BP; 1255 A; 485 C; 579 G; 948 T; 0 other;
     atggggaagt ataatctaat cttgtcagaa tatttatcat ttatatacga ttcacaatct        60
     gcagttcaaa ttccgattta ttattcttcc aatagtgaac tggaaagtag atgtattgaa       120
     tttcattcta aatgtttgga aaattcaaaa aatggactgt cactaaagaa actcttcata       180
     gaatacaatg acgttataga aaatgctaca ttgctatcaa ttctatcata ctcatatgat       240
     aaatacaatg ctgttgaaag aaaattagtt aagtatgcaa gagggaaacc attagaagca       300
     gatttaacag taaatgaatt agattatgaa aataataaaa taacctctga gctatttcca       360
     acagcggaag agtacaccga ttcactaatg gatccagcga ttctaacgtc cttgtcatcc       420
     aatttaaatg cagttatgtt ctggttagaa aaacatgaaa atgatacagc tgaaaagctt       480
     aagatttata aaagaagatc agatttattt actatagttg catcaacagt gaataaatac       540
     ggtgtgccaa gacataacgc aaaatataga tatgaatatg atgtgatgaa ggacaaacca       600
     tattacttag taacatgggc gaactcttca attgagatgt tgatgtcggt tttttctcac       660
     gaggactatt taattgcgag agaactgata gtactatcat attctaatag atcgactctg       720
     gcgaaattag tctcatcacc gatgtcaatt cttgtagcat tagtagatat taatggaacg       780
     ttcattacaa acgaagagtt agaattagaa ttttcaaaca aatatgtacg agccatagtg       840
     ccggatcaaa catttgatga actaaaccaa atgcttgata atatgagaaa agctggatta       900
     gttgatatac caaaaatgat acaggattgg ttgacaaatt gttctatcga aaaatttcca       960
     ttaatggcta aaatatattc atggtcattt cacgttggat ttagaaaaca aaaaatgttg      1020
     gatgctgcgt tagatcaatt gaaaactgaa tatacagaag atgtggatga agaaatgtat      1080
     cgcgaataca caatgctaat aagagatgaa gttgtcaaaa tgcttgagga accggtgaaa      1140
     catgatgatc acttattaca ggattctgaa ttagctggtt tactatcaat gtcatcagca      1200
     tcaaatggtg agtccagaca gcttaaattt ggtagaaaaa caattttttc aaccaaaaag      1260
     aatatgcacg tgatggatga tatggctaat ggaagatata caccaggtat aataccacca      1320
     gtaaatgttg acaaaccaat tccattaggg aggagagatg taccgggaag aagaaccaga      1380
     atcatattta tattgccata tgagtatttt atagcgcaac acgctgtagt tgaaaaaatg      1440
     ttaatatatg caaaacacac tagagaatat gctgagtttt attcacaatc gaatcagcta      1500
     ctatcatacg gtgatgttac gcgatttcta tctaataatg ccatggtgct atatacagat      1560
     gtatctcaat gggattcatc ccagcacaat acgcaaccat tcaggaaggg aataataatg      1620
     ggattagata tattagccaa catgactaat gatgctagag ttattcagac actaaatttg      1680
     tataaacaaa cacagattaa tttaatggat tcatacgttc aaataccaga tggtaacgtt      1740
     attaagaaaa tacaatatgg agctgtagca tcaggagaaa agcagacgaa agcagcgaat      1800
     tcaatagcaa acctggcact gattaaaaca gttctatcac gtatatctaa taaatactca      1860
     tttgccacaa agataataag agttgatggt gatgacaact acgccgtatt gcaatttaat      1920
     acagaagtga ctaaacagat gattcaagat gtatcaaatg acgtaagaga aacttatgca      1980
     cgtatgaatg ctaaagttaa agctttagtg tccacagtag gaatagagat agctaaaagg      2040
     tatattgcag gtggaaagat attttttaga gcaggaataa atctacttaa caatgaaaag      2100
     agaggacaga gtacacaatg ggaccaagca gcggttctat actcaaatta cattgtgaat      2160
     agacttcgag ggtttgaaac tgatagagaa tttatactga ccaaaataat gcaaatgacg      2220
     tcggttgcta tcactggatc attaagactt ttcccttcgg aacgtgtatt gaccacaaat      2280
     tctacattta aagtatttga ttcagaagac tttattatag aatatgggac aactgacgat      2340
     gaagtgtata tacaaagagc gttcatgtca ctatcaagtc aaagatcggg aatagctgat      2400
     gaaatagctg catcaacaac atttaaaaat tacgtatcaa aactatcaga gcagttactt      2460
     ttttcaaaga acaatatagt atccagggga atagctttga ctgagaaagc gaaattgaat      2520
     tcatatgcac caatatcact tgaaaagaga cgtgcacaga tatcagcact actaacaatg      2580
     ttacagaaac cagttacatt taaatcaagt aaaataacaa taaatgatat acttggagat      2640
     ataaaaccat tttttacgat aagtgaagca catttaccga tacagtatca gaaatttatg      2700
     ccaacattac cagaaaacgt acaatatata attcagtgca taggatcaag aacttatcaa      2760
     attgaagatg acggctcaaa gtcagcaata tctcgtttaa tatcaaaata ttcagtttat      2820
     aaaccgtcaa ttgaagagct gtataaagta atttcattac atgaaaatga aatacaatta      2880
     tatttaattt cactaggcat accaaaaata gatgctgata catatgtagg atcaaagatc      2940
     tattctcaag ataagtatag gatactagaa tcatacgtgt ataacctatt atctattaat      3000
     tatggatgtt atcaattatt tgactttaat tcaccagatt tagaaaagtt aatcagaata      3060
     ccgtttaagg gaaagatacc agctgttact ttcatactgc atttgtatgc taaactagaa      3120
     gttataaatt acgctattaa gaatggttca tggataagtg tgttctgtaa ttatccaaaa      3180
     tcggaaatga taaaactatg gaagaaaatg tggaacatta catcgttgcg atcaccatat      3240
     tctaatgcga atttctttca agattag                                          3267
//