ID   AFO82958; SV 1; linear; viral cRNA; STD; VRL; 1695 BP.
XX
PA   JX310059.1
XX
DT   16-SEP-2012 (Rel. 114, Created)
DT   16-SEP-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Influenza A virus (A/duck/India/WB-NIV10736/2009(H4N6)) hemagglutinin
XX
KW   .
XX
OS   Influenza A virus (A/duck/India/WB-NIV10736/2009(H4N6))
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes;
OC   Articulavirales; Orthomyxoviridae; Alphainfluenzavirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RX   PUBMED; 22867041.
RA   Pawar S.D., Kale S.D., Rawankar A.S., Koratkar S.S., Raut C.G., Pande S.A.,
RA   Mullick J., Mishra A.C.;
RT   "Avian influenza surveillance reveals presence of low pathogenic avian
RT   influenza viruses in poultry during 2009 inverted question mark2011 in the
RT   West Bengal State, India";
RL   Virol J 9(1):151-151(2012).
XX
RN   [2]
RA   Mullick J., Deshpande A., Payyapilly B., Bangale R., Keng S.S., Walke S.,
RA   Pawar S.D., Mishra A.C.;
RT   ;
RL   Submitted (13-JUL-2012) to the INSDC.
RL   Avian Influenza, National Institute of Virology, 130/1 Sus Road, MCC, NIV,
RL   Pune, Maharashtra 411021, India
XX
DR   MD5; 5348f6170405c783edf63b94a7c404c0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1695
FT                   /organism="Influenza A virus
FT                   (A/duck/India/WB-NIV10736/2009(H4N6))"
FT                   /segment="4"
FT                   /host="Anas platyrhynchos"
FT                   /strain="A/duck/India/WB-NIV10736/2009"
FT                   /serotype="H4N6"
FT                   /mol_type="viral cRNA"
FT                   /country="India:Murshidabad"
FT                   /isolation_source="tracheal swab"
FT                   /collected_by="S.D. Pawar"
FT                   /collection_date="17-Dec-2009"
FT                   /db_xref="taxon:1210132"
FT   CDS             JX310059.1:1..1695
FT                   /codon_start=1
FT                   /gene="HA"
FT                   /product="hemagglutinin"
FT                   /db_xref="GOA:J9QEK0"
FT                   /db_xref="InterPro:IPR000149"
FT                   /db_xref="InterPro:IPR001364"
FT                   /db_xref="InterPro:IPR008980"
FT                   /db_xref="InterPro:IPR013828"
FT                   /db_xref="UniProtKB/TrEMBL:J9QEK0"
FT                   /protein_id="AFO82958.1"
FT                   /translation="MLSIVILFLLVAESSSQNYTGNPVICMGHHAVANGTMVKTLTDDQ
FT                   VEVVTAQELVESQNLPELCPSPLRLVDGQTCDIINGALGSPGCDHLNDAKWDIFIERPN
FT                   AVDTCYPFDVPDYQSLRSILANNGKFEFIAEEFQWSTVKQNGKSGACKRANVNDFFNRL
FT                   NWLVKSNGDAYPLQNLTKVNNGDYARLYIWGVHHPSTDTEQTNLYKNNPGRVTVSTKTS
FT                   QTSVVPNIGSRPWVRGQSGRISFYWTIVEPGDLIVFNTIGNLIAPRGHYKLNSQKKSTI
FT                   LNTATPIGSCVSKCHTDKGSLSTTKPFQNISRIAIGDCPKYVKQGSLKLATGMRNIPEK
FT                   ASRGLFGAIAGFIENGWQGLIDGWYGFRHQNAEGTGTAADLKSTQAAIDQINGKLNRLI
FT                   EKTNEKYHQIEKEFEQVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDVTDSEM
FT                   NKLFERVRRQLRENAEDKGNGCFEIFHKCDNNCIESIRNGTYDHDIYRDEAINNRFQIQ
FT                   GVKLAQGYKNIILWISFSISCFLLVALLLAFILWACQNGNIRCQICI"
XX
SQ   Sequence 1695 BP; 554 A; 338 C; 392 G; 411 T; 0 other;
     atgctatcaa ttgtgatttt gtttctgctt gttgcagaga gctcttctca aaactacaca        60
     ggaaaccctg tgatatgtat gggacatcat gctgtagcca atgggactat ggtaaagacc       120
     ctcactgatg atcaagtgga agtggtcact gcacaggaac tggtggaatc acagaacctc       180
     ccggaactat gcccgagtcc tctaagacta gtcgatggcc agacctgtga tatcatcaat       240
     ggagccttgg gaagcccagg atgtgaccat ttgaatgatg ctaaatggga cattttcata       300
     gaaaggccca atgcggtgga cacttgctat ccatttgatg tgccagatta tcagagccta       360
     aggagcatac tcgccaacaa tgggaaattc gaattcattg ctgaagaatt ccaatggagc       420
     actgtgaagc aaaatggcaa atccggggcc tgcaagaggg caaatgtgaa cgatttcttt       480
     aataggctga attggctcgt gaagtcaaac ggggatgcat accctctcca gaatttgaca       540
     aaagtaaaca acggtgatta tgcgaggctt tacatctggg gagttcacca cccttcgacg       600
     gataccgagc aaaccaacct gtacaagaac aatcctggta gggttactgt ctctaccaaa       660
     actagtcaga caagtgtagt gcccaacatt ggcagcagac cttgggtgag aggacaaagt       720
     ggcagaatca gtttctattg gactattgta gagcctggag atttgatagt cttcaacaca       780
     ataggaaatt taattgcccc aagaggacat tacaaattaa acagtcagaa gaagagcaca       840
     attctgaaca ctgcaactcc cataggctca tgtgtcagta aatgtcacac agacaaaggt       900
     tctctctcta ctacaaagcc ctttcaaaat atctcaagga tagcaattgg agactgtccc       960
     aaatatgtca aacagggctc cctaaaactt gcaactggga tgagaaatat ccctgaaaag      1020
     gcatcaagag ggctttttgg ggcaatagct ggattcatag agaatggatg gcaaggcctg      1080
     attgatggtt ggtatgggtt cagacaccaa aatgcagaag gaacaggaac agctgctgat      1140
     ctaaaatcca ctcaggcagc cattgatcag atcaatggaa aacttaatcg tcttattgag      1200
     aagacaaacg agaaatacca ccaaatcgaa aaagaattcg aacaagttga aggaagaatc      1260
     caagacctgg agaagtatgt tgaagacaca aagattgatc tatggtcata taatgcagag      1320
     ctattagtag ctttggaaaa ccagcatact atagatgtga ctgattcgga gatgaacaaa      1380
     ctctttgaaa gagtaaggcg acaactcagg gagaatgctg aagacaaagg aaatgggtgc      1440
     tttgaaatat tccacaaatg tgacaacaac tgcattgaaa gcattcgaaa tgggacctat      1500
     gatcatgata tttatagaga tgaagcgatc aacaatcgat tccaaataca gggagtcaaa      1560
     ttggcccagg gatacaagaa catcatcctt tggatttcgt tctccatatc atgctttttg      1620
     ctcgtagcac tgcttttggc cttcattttg tgggcttgtc agaacggaaa catccggtgc      1680
     cagatttgca tttaa                                                       1695
//