ID AFO82958; SV 1; linear; viral cRNA; STD; VRL; 1695 BP. XX PA JX310059.1 XX DT 16-SEP-2012 (Rel. 114, Created) DT 16-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Influenza A virus (A/duck/India/WB-NIV10736/2009(H4N6)) hemagglutinin XX KW . XX OS Influenza A virus (A/duck/India/WB-NIV10736/2009(H4N6)) OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RC Publication Status: Online-Only RX PUBMED; 22867041. RA Pawar S.D., Kale S.D., Rawankar A.S., Koratkar S.S., Raut C.G., Pande S.A., RA Mullick J., Mishra A.C.; RT "Avian influenza surveillance reveals presence of low pathogenic avian RT influenza viruses in poultry during 2009 inverted question mark2011 in the RT West Bengal State, India"; RL Virol J 9(1):151-151(2012). XX RN [2] RA Mullick J., Deshpande A., Payyapilly B., Bangale R., Keng S.S., Walke S., RA Pawar S.D., Mishra A.C.; RT ; RL Submitted (13-JUL-2012) to the INSDC. RL Avian Influenza, National Institute of Virology, 130/1 Sus Road, MCC, NIV, RL Pune, Maharashtra 411021, India XX DR MD5; 5348f6170405c783edf63b94a7c404c0. XX FH Key Location/Qualifiers FH FT source 1..1695 FT /organism="Influenza A virus FT (A/duck/India/WB-NIV10736/2009(H4N6))" FT /segment="4" FT /host="Anas platyrhynchos" FT /strain="A/duck/India/WB-NIV10736/2009" FT /serotype="H4N6" FT /mol_type="viral cRNA" FT /country="India:Murshidabad" FT /isolation_source="tracheal swab" FT /collected_by="S.D. Pawar" FT /collection_date="17-Dec-2009" FT /db_xref="taxon:1210132" FT CDS JX310059.1:1..1695 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /db_xref="GOA:J9QEK0" FT /db_xref="InterPro:IPR000149" FT /db_xref="InterPro:IPR001364" FT /db_xref="InterPro:IPR008980" FT /db_xref="InterPro:IPR013828" FT /db_xref="UniProtKB/TrEMBL:J9QEK0" FT /protein_id="AFO82958.1" FT /translation="MLSIVILFLLVAESSSQNYTGNPVICMGHHAVANGTMVKTLTDDQ FT VEVVTAQELVESQNLPELCPSPLRLVDGQTCDIINGALGSPGCDHLNDAKWDIFIERPN FT AVDTCYPFDVPDYQSLRSILANNGKFEFIAEEFQWSTVKQNGKSGACKRANVNDFFNRL FT NWLVKSNGDAYPLQNLTKVNNGDYARLYIWGVHHPSTDTEQTNLYKNNPGRVTVSTKTS FT QTSVVPNIGSRPWVRGQSGRISFYWTIVEPGDLIVFNTIGNLIAPRGHYKLNSQKKSTI FT LNTATPIGSCVSKCHTDKGSLSTTKPFQNISRIAIGDCPKYVKQGSLKLATGMRNIPEK FT ASRGLFGAIAGFIENGWQGLIDGWYGFRHQNAEGTGTAADLKSTQAAIDQINGKLNRLI FT EKTNEKYHQIEKEFEQVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDVTDSEM FT NKLFERVRRQLRENAEDKGNGCFEIFHKCDNNCIESIRNGTYDHDIYRDEAINNRFQIQ FT GVKLAQGYKNIILWISFSISCFLLVALLLAFILWACQNGNIRCQICI" XX SQ Sequence 1695 BP; 554 A; 338 C; 392 G; 411 T; 0 other; atgctatcaa ttgtgatttt gtttctgctt gttgcagaga gctcttctca aaactacaca 60 ggaaaccctg tgatatgtat gggacatcat gctgtagcca atgggactat ggtaaagacc 120 ctcactgatg atcaagtgga agtggtcact gcacaggaac tggtggaatc acagaacctc 180 ccggaactat gcccgagtcc tctaagacta gtcgatggcc agacctgtga tatcatcaat 240 ggagccttgg gaagcccagg atgtgaccat ttgaatgatg ctaaatggga cattttcata 300 gaaaggccca atgcggtgga cacttgctat ccatttgatg tgccagatta tcagagccta 360 aggagcatac tcgccaacaa tgggaaattc gaattcattg ctgaagaatt ccaatggagc 420 actgtgaagc aaaatggcaa atccggggcc tgcaagaggg caaatgtgaa cgatttcttt 480 aataggctga attggctcgt gaagtcaaac ggggatgcat accctctcca gaatttgaca 540 aaagtaaaca acggtgatta tgcgaggctt tacatctggg gagttcacca cccttcgacg 600 gataccgagc aaaccaacct gtacaagaac aatcctggta gggttactgt ctctaccaaa 660 actagtcaga caagtgtagt gcccaacatt ggcagcagac cttgggtgag aggacaaagt 720 ggcagaatca gtttctattg gactattgta gagcctggag atttgatagt cttcaacaca 780 ataggaaatt taattgcccc aagaggacat tacaaattaa acagtcagaa gaagagcaca 840 attctgaaca ctgcaactcc cataggctca tgtgtcagta aatgtcacac agacaaaggt 900 tctctctcta ctacaaagcc ctttcaaaat atctcaagga tagcaattgg agactgtccc 960 aaatatgtca aacagggctc cctaaaactt gcaactggga tgagaaatat ccctgaaaag 1020 gcatcaagag ggctttttgg ggcaatagct ggattcatag agaatggatg gcaaggcctg 1080 attgatggtt ggtatgggtt cagacaccaa aatgcagaag gaacaggaac agctgctgat 1140 ctaaaatcca ctcaggcagc cattgatcag atcaatggaa aacttaatcg tcttattgag 1200 aagacaaacg agaaatacca ccaaatcgaa aaagaattcg aacaagttga aggaagaatc 1260 caagacctgg agaagtatgt tgaagacaca aagattgatc tatggtcata taatgcagag 1320 ctattagtag ctttggaaaa ccagcatact atagatgtga ctgattcgga gatgaacaaa 1380 ctctttgaaa gagtaaggcg acaactcagg gagaatgctg aagacaaagg aaatgggtgc 1440 tttgaaatat tccacaaatg tgacaacaac tgcattgaaa gcattcgaaa tgggacctat 1500 gatcatgata tttatagaga tgaagcgatc aacaatcgat tccaaataca gggagtcaaa 1560 ttggcccagg gatacaagaa catcatcctt tggatttcgt tctccatatc atgctttttg 1620 ctcgtagcac tgcttttggc cttcattttg tgggcttgtc agaacggaaa catccggtgc 1680 cagatttgca tttaa 1695 //