ID   AGN69801; SV 1; linear; viral cRNA; STD; VRL; 1695 BP.
XX
PA   KF113545.1
XX
DT   04-JUN-2014 (Rel. 121, Created)
DT   04-JUN-2014 (Rel. 121, Last updated, Version 1)
XX
DE   Influenza A virus (A/chicken/Pakistan/NARC-28842/2011(H4N6)) hemagglutinin
XX
KW   .
XX
OS   Influenza A virus (A/chicken/Pakistan/NARC-28842/2011(H4N6))
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes;
OC   Articulavirales; Orthomyxoviridae; Alphainfluenzavirus.
XX
RN   [1]
RA   Siddique N., Naeem K., Abbas M.A., Ali A., Rashid F., Rafique S., Begum I.,
RA   Ghafar A., Malik S.A.;
RT   "Isolation and sequence analysis of reassortant low pathogenic AIV H4N6
RT   isolated from duck and chicken in live birds market from Pakistan";
RL   Unpublished.
XX
RN   [2]
RA   Siddique N., Naeem K., Abbas M.A., Ali A., Rashid F., Rafique S., Begum I.,
RA   Ghafar A., Malik S.A.;
RT   ;
RL   Submitted (21-MAY-2013) to the INSDC.
RL   National Reference Lab for Poultry Diseases (NRLPD), Animal Sciences
RL   Institute (ASI), National Agricultural Research Center (NARC), Park Road,
RL   Islamabad, Federal Area 45500, Pakistan
XX
DR   MD5; 928208aa8feb56215ad088472e31a4dc.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1695
FT                   /organism="Influenza A virus
FT                   (A/chicken/Pakistan/NARC-28842/2011(H4N6))"
FT                   /segment="4"
FT                   /host="Gallus gallus domesticus"
FT                   /strain="A/chicken/Pakistan/NARC-28842/2011"
FT                   /serotype="H4N6"
FT                   /mol_type="viral cRNA"
FT                   /country="Pakistan"
FT                   /isolation_source="allantoic fluid"
FT                   /collection_date="10-Oct-2011"
FT                   /db_xref="taxon:1336028"
FT   CDS             KF113545.1:1..1695
FT                   /codon_start=1
FT                   /gene="HA"
FT                   /product="hemagglutinin"
FT                   /db_xref="GOA:A0A059PSD1"
FT                   /db_xref="InterPro:IPR000149"
FT                   /db_xref="InterPro:IPR001364"
FT                   /db_xref="InterPro:IPR008980"
FT                   /db_xref="InterPro:IPR013828"
FT                   /db_xref="UniProtKB/TrEMBL:A0A059PSD1"
FT                   /protein_id="AGN69801.1"
FT                   /translation="MLSIVILFMLVAESSSQNYTGNPVICMGHHAVANGTMVKTLTDDQ
FT                   VEVVTAQELVESQNLPELCPSPLRLVDGQTCDIINGALGSPGCDHLNGAEWDIFIERPN
FT                   AVDTCYPFDVPDYQSLRSILANNGKFEFIAEEFQWSTVKQNGKSGACKRANVNDFFNRL
FT                   NWLVKSDGNAYPLQNLTKVNNGDYARLYIWGVHHPSTDTEQTNLYENNPGRVTVSTKTS
FT                   QTSVVPNIGSRPWVRGQSGRISFYWTIVEPGDLIVFNTIGNLIAPRGHYKLNNQKKSTI
FT                   LNTATPIGSCVSKCHTDKGSLSTTKPFQNISRIAIGDCPKYVKQGSLKLATGMRNIPEK
FT                   ASRGLFGAIAGFIENGWQGLIDGWYGFRHQNAEGTGTAADLKSTQAAIDQINGKLNRLI
FT                   EKTNEKYHQIEKEFEQVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDVTDSEM
FT                   NKLFERVRRQLRENAEDKGNGCFEIFHKCDNNCIESIRNGTYDHDIYRDEAINNRFQIQ
FT                   GVKLIQGYKDIILWISFSISCFLLVALLLAFILWACQNGNIRCQICI"
XX
SQ   Sequence 1695 BP; 549 A; 342 C; 397 G; 407 T; 0 other;
     atgctatcaa ttgtaatttt gtttatgctt gttgcagaga gctcttctca aaattacaca        60
     ggaaaccctg tgatatgcat gggacatcat gctgtggcca atgggactat ggtaaagacc       120
     ctcactgatg atcaagtgga agtggtcact gcacaagaac tggtagaatc acagaacctc       180
     ccggaactat gcccgagtcc tctgagacta gtcgatggcc agacctgtga catcatcaat       240
     ggagccttag gaagcccagg atgtgaccat ttgaatggtg ccgagtggga cattttcata       300
     gaaaggccca atgcagtgga cacttgctat ccgtttgatg tgccagatta tcagagcctg       360
     aggagcatac ttgccaacaa tgggaaattc gaattcattg ctgaagaatt ccaatggagc       420
     accgtgaagc aaaatggtaa atccggggcc tgcaagaggg caaatgtgaa cgatttcttt       480
     aataggctga attggctcgt gaagtcagac gggaatgcgt accctctcca gaatttgaca       540
     aaggtaaaca acggtgatta tgcgaggctt tacatctggg gagttcatca cccttcaacg       600
     gacaccgagc aaaccaacct gtacgagaac aatcctggta gggttactgt atctaccaaa       660
     actagtcaaa caagtgtagt gcccaacatc ggcagcagac cttgggtgag aggacaaagt       720
     ggcagaatca gcttctattg gactattgta gagcctggag atttgatagt cttcaacaca       780
     ataggaaatt taattgctcc aagaggacat tacaagttaa acaatcagaa gaagagcaca       840
     attctgaaca ctgcaactcc tataggctca tgtgtcagta aatgtcatac agacaaaggt       900
     tctctctcta ccaccaagcc ctttcaaaat atctcaagga tagcaattgg agattgtccc       960
     aaatatgtca aacaaggctc cctaaaactt gcaacaggga tgagaaacat ccctgaaaag      1020
     gcatcaagag ggctttttgg ggcaatagct gggttcatag agaatggatg gcaaggcctg      1080
     attgatggtt ggtacggctt cagacaccaa aacgcggagg gaacaggaac agctgctgat      1140
     ctaaaatcca ctcaggcagc cattgatcag atcaacggaa aacttaatcg tcttattgag      1200
     aagaccaacg aaaaatacca tcaaatcgaa aaagaattcg aacaagttga aggaagaatc      1260
     caagacctgg agaagtatgt tgaggacaca aaaattgatc tatggtcata taatgcagag      1320
     ctattagtcg ctctggaaaa ccagcacact atagatgtga ctgactcgga gatgaataag      1380
     ctctttgaaa gagtaaggcg acaactcagg gagaatgctg aagacaaagg aaatgggtgc      1440
     tttgaaatat ttcacaaatg tgacaacaac tgcattgaaa gcattcggaa tgggacctat      1500
     gatcatgata tttatagaga tgaagcgata aacaatcgat tccaaataca gggagtcaaa      1560
     ttgatccagg gatacaagga catcatcctt tggatttcgt tctccatatc atgctttttg      1620
     ctcgtagcac tgcttttggc cttcattttg tgggcttgtc agaacggaaa catccggtgc      1680
     cagatttgca tttaa                                                       1695
//