ID AGN69801; SV 1; linear; viral cRNA; STD; VRL; 1695 BP. XX PA KF113545.1 XX DT 04-JUN-2014 (Rel. 121, Created) DT 04-JUN-2014 (Rel. 121, Last updated, Version 1) XX DE Influenza A virus (A/chicken/Pakistan/NARC-28842/2011(H4N6)) hemagglutinin XX KW . XX OS Influenza A virus (A/chicken/Pakistan/NARC-28842/2011(H4N6)) OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RA Siddique N., Naeem K., Abbas M.A., Ali A., Rashid F., Rafique S., Begum I., RA Ghafar A., Malik S.A.; RT "Isolation and sequence analysis of reassortant low pathogenic AIV H4N6 RT isolated from duck and chicken in live birds market from Pakistan"; RL Unpublished. XX RN [2] RA Siddique N., Naeem K., Abbas M.A., Ali A., Rashid F., Rafique S., Begum I., RA Ghafar A., Malik S.A.; RT ; RL Submitted (21-MAY-2013) to the INSDC. RL National Reference Lab for Poultry Diseases (NRLPD), Animal Sciences RL Institute (ASI), National Agricultural Research Center (NARC), Park Road, RL Islamabad, Federal Area 45500, Pakistan XX DR MD5; 928208aa8feb56215ad088472e31a4dc. XX FH Key Location/Qualifiers FH FT source 1..1695 FT /organism="Influenza A virus FT (A/chicken/Pakistan/NARC-28842/2011(H4N6))" FT /segment="4" FT /host="Gallus gallus domesticus" FT /strain="A/chicken/Pakistan/NARC-28842/2011" FT /serotype="H4N6" FT /mol_type="viral cRNA" FT /country="Pakistan" FT /isolation_source="allantoic fluid" FT /collection_date="10-Oct-2011" FT /db_xref="taxon:1336028" FT CDS KF113545.1:1..1695 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /db_xref="GOA:A0A059PSD1" FT /db_xref="InterPro:IPR000149" FT /db_xref="InterPro:IPR001364" FT /db_xref="InterPro:IPR008980" FT /db_xref="InterPro:IPR013828" FT /db_xref="UniProtKB/TrEMBL:A0A059PSD1" FT /protein_id="AGN69801.1" FT /translation="MLSIVILFMLVAESSSQNYTGNPVICMGHHAVANGTMVKTLTDDQ FT VEVVTAQELVESQNLPELCPSPLRLVDGQTCDIINGALGSPGCDHLNGAEWDIFIERPN FT AVDTCYPFDVPDYQSLRSILANNGKFEFIAEEFQWSTVKQNGKSGACKRANVNDFFNRL FT NWLVKSDGNAYPLQNLTKVNNGDYARLYIWGVHHPSTDTEQTNLYENNPGRVTVSTKTS FT QTSVVPNIGSRPWVRGQSGRISFYWTIVEPGDLIVFNTIGNLIAPRGHYKLNNQKKSTI FT LNTATPIGSCVSKCHTDKGSLSTTKPFQNISRIAIGDCPKYVKQGSLKLATGMRNIPEK FT ASRGLFGAIAGFIENGWQGLIDGWYGFRHQNAEGTGTAADLKSTQAAIDQINGKLNRLI FT EKTNEKYHQIEKEFEQVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDVTDSEM FT NKLFERVRRQLRENAEDKGNGCFEIFHKCDNNCIESIRNGTYDHDIYRDEAINNRFQIQ FT GVKLIQGYKDIILWISFSISCFLLVALLLAFILWACQNGNIRCQICI" XX SQ Sequence 1695 BP; 549 A; 342 C; 397 G; 407 T; 0 other; atgctatcaa ttgtaatttt gtttatgctt gttgcagaga gctcttctca aaattacaca 60 ggaaaccctg tgatatgcat gggacatcat gctgtggcca atgggactat ggtaaagacc 120 ctcactgatg atcaagtgga agtggtcact gcacaagaac tggtagaatc acagaacctc 180 ccggaactat gcccgagtcc tctgagacta gtcgatggcc agacctgtga catcatcaat 240 ggagccttag gaagcccagg atgtgaccat ttgaatggtg ccgagtggga cattttcata 300 gaaaggccca atgcagtgga cacttgctat ccgtttgatg tgccagatta tcagagcctg 360 aggagcatac ttgccaacaa tgggaaattc gaattcattg ctgaagaatt ccaatggagc 420 accgtgaagc aaaatggtaa atccggggcc tgcaagaggg caaatgtgaa cgatttcttt 480 aataggctga attggctcgt gaagtcagac gggaatgcgt accctctcca gaatttgaca 540 aaggtaaaca acggtgatta tgcgaggctt tacatctggg gagttcatca cccttcaacg 600 gacaccgagc aaaccaacct gtacgagaac aatcctggta gggttactgt atctaccaaa 660 actagtcaaa caagtgtagt gcccaacatc ggcagcagac cttgggtgag aggacaaagt 720 ggcagaatca gcttctattg gactattgta gagcctggag atttgatagt cttcaacaca 780 ataggaaatt taattgctcc aagaggacat tacaagttaa acaatcagaa gaagagcaca 840 attctgaaca ctgcaactcc tataggctca tgtgtcagta aatgtcatac agacaaaggt 900 tctctctcta ccaccaagcc ctttcaaaat atctcaagga tagcaattgg agattgtccc 960 aaatatgtca aacaaggctc cctaaaactt gcaacaggga tgagaaacat ccctgaaaag 1020 gcatcaagag ggctttttgg ggcaatagct gggttcatag agaatggatg gcaaggcctg 1080 attgatggtt ggtacggctt cagacaccaa aacgcggagg gaacaggaac agctgctgat 1140 ctaaaatcca ctcaggcagc cattgatcag atcaacggaa aacttaatcg tcttattgag 1200 aagaccaacg aaaaatacca tcaaatcgaa aaagaattcg aacaagttga aggaagaatc 1260 caagacctgg agaagtatgt tgaggacaca aaaattgatc tatggtcata taatgcagag 1320 ctattagtcg ctctggaaaa ccagcacact atagatgtga ctgactcgga gatgaataag 1380 ctctttgaaa gagtaaggcg acaactcagg gagaatgctg aagacaaagg aaatgggtgc 1440 tttgaaatat ttcacaaatg tgacaacaac tgcattgaaa gcattcggaa tgggacctat 1500 gatcatgata tttatagaga tgaagcgata aacaatcgat tccaaataca gggagtcaaa 1560 ttgatccagg gatacaagga catcatcctt tggatttcgt tctccatatc atgctttttg 1620 ctcgtagcac tgcttttggc cttcattttg tgggcttgtc agaacggaaa catccggtgc 1680 cagatttgca tttaa 1695 //