ID   AHN59374; SV 1; linear; genomic DNA; STD; INV; 774 BP.
XX
PA   AE014298.5
XX
PR   Project:PRJNA13812;
XX
DT   30-AUG-2006 (Rel. 89, Created)
DT   25-JUN-2024 (Rel. 144, Last updated, Version 28)
XX
DE   Drosophila melanogaster (fruit fly) crossveinless, isoform C
XX
KW   .
XX
OS   Drosophila melanogaster (fruit fly)
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila; Sophophora.
XX
RN   [1]
RX   DOI; 10.1126/science.287.5461.2185.
RX   PUBMED; 10731132.
RA   Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
RA   Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
RA   George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
RA   Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., Brandon R.C.,
RA   Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C.,
RA   Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A.,
RA   An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A.,
RA   Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V.,
RA   Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J.,
RA   Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E.,
RA   Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B.,
RA   Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I.,
RA   Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C.,
RA   Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S.,
RA   Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M.,
RA   Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
RA   Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D.,
RA   Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F.,
RA   Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D.,
RA   Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A.,
RA   Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C.,
RA   McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C.,
RA   Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L.,
RA   Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R.,
RA   Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V.,
RA   Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
RA   Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E.,
RA   Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C.,
RA   Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A.,
RA   Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C.,
RA   Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G.,
RA   Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.,
RA   Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
RT   "The genome sequence of Drosophila melanogaster";
RL   Science 287(5461):2185-2195(2000).
XX
RN   [2]
RX   PUBMED; 12537568.
RA   Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
RA   Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
RA   George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
RA   Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
RA   Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
RA   Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
RT   "Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster
RT   euchromatic genome sequence";
RL   Genome Biol 3(12):.
XX
RN   [3]
RX   PUBMED; 12537572.
RA   Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
RA   Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
RA   Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
RA   Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A., Harris N.L.,
RA   Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C.,
RA   Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.;
RT   "Annotation of the Drosophila melanogaster euchromatic genome: a systematic
RT   review";
RL   Genome Biol 3(12):.
XX
RN   [4]
RX   PUBMED; 12537573.
RA   Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
RA   Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M.,
RA   Celniker S.E.;
RT   "The transposable elements of the Drosophila melanogaster euchromatin: a
RT   genomics perspective";
RL   Genome Biol 3(12):.
XX
RN   [5]
RX   PUBMED; 12537574.
RA   Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
RA   Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
RA   Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
RA   Karpen G.H.;
RT   "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly";
RL   Genome Biol 3(12):.
XX
RN   [6]
RX   PUBMED; 16110336.
RA   Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
RA   Ashburner M., Anxolabehere D.;
RT   "Combined evidence annotation of transposable elements in genome
RT   sequences";
RL   PLoS Comput Biol 1(2):166-175(2005).
XX
RN   [7]
RC   Erratum:[Science. 2007 Sep 7;317(5843):1325]
RX   DOI; 10.1126/science.1139815.
RX   PUBMED; 17569856.
RA   Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
RT   "The Release 5.1 annotation of Drosophila melanogaster heterochromatin";
RL   Science 316(5831):1586-1591(2007).
XX
RN   [8]
RX   DOI; 10.1126/science.1139816.
RX   PUBMED; 17569867.
RA   Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
RA   Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
RA   Dimitri P., Karpen G.H., Celniker S.E.;
RT   "Sequence finishing and mapping of Drosophila melanogaster
RT   heterochromatin";
RL   Science 316(5831):1625-1628(2007).
XX
RN   [9]
RX   PUBMED; 25589440.
RA   Hoskins R.A., Carlson J.W., Wan K.H., Park S., Mendez I., Galle S.E.,
RA   Booth B.W., Pfeiffer B.D., George R.A., Svirskas R., Krzywinski M.,
RA   Schein J., Accardo M.C., Damia E., Messina G., Mendez-Lago M.,
RA   de Pablos B., Demakova O.V., Andreyeva E.N., Boldyreva L.V., Marra M.,
RA   Carvalho A.B., Dimitri P., Villasante A., Zhimulev I.F., Rubin G.M.,
RA   Karpen G.H., Celniker S.E.;
RT   "The Release 6 reference sequence of the Drosophila melanogaster genome";
RL   Genome Res 25(3):445-458(2015).
XX
RN   [10]
RC   Publication Status: Online-Only
RX   PUBMED; 26109356.
RG   FlyBase Consortium
RA   Crosby M.A., Gramates L.S., Dos Santos G., Matthews B.B., St Pierre S.E.,
RA   Zhou P., Schroeder A.J., Falls K., Emmert D.B., Russo S.M., Gelbart W.M.;
RT   "Gene Model Annotations for Drosophila melanogaster: The Rule-Benders";
RL   G3 (Bethesda, Md.) 5(8):1737-1749(2015).
XX
RN   [11]
RC   Publication Status: Online-Only
RX   PUBMED; 26109357.
RG   FlyBase Consortium
RA   Matthews B.B., Dos Santos G., Crosby M.A., Emmert D.B., St Pierre S.E.,
RA   Gramates L.S., Zhou P., Schroeder A.J., Falls K., Strelets V., Russo S.M.,
RA   Gelbart W.M.;
RT   "Gene Model Annotations for Drosophila melanogaster: Impact of
RT   High-Throughput Data";
RL   G3 (Bethesda, Md.) 5(8):1721-1736(2015).
XX
RN   [12]
RG   Berkeley Drosophila Genome Project
RA   Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
RA   Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C.,
RA   Rubin G.;
RT   "Drosophila melanogaster release 4 sequence";
RL   Unpublished.
XX
RN   [13]
RA   Adams M.D., Celniker S.E., Gibbs R.A., Rubin G.M., Venter C.J.;
RT   ;
RL   Submitted (21-MAR-2000) to the INSDC.
RL   Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA
XX
RN   [14]
RG   Drosophila Heterochromatin Genome Project
RA   Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
RT   ;
RL   Submitted (01-AUG-2006) to the INSDC.
RL   Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley
RL   National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720,
RL   USA
XX
RN   [15]
RC   Direct Submission
RA   Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S.,
RA   Svirskas R., Karpen G.;
RT   ;
RL   Submitted (10-AUG-2006) to the INSDC.
RL   Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory,
RL   One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
XX
RN   [16]
RC   Direct Submission
RA   Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
RA   Svirskas R., Rubin G.;
RT   ;
RL   Submitted (10-AUG-2006) to the INSDC.
RL   Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory,
RL   One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
XX
RN   [17]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (07-DEC-2016) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [18]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (24-MAY-2018) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [19]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (22-APR-2019) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [20]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (20-APR-2020) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [21]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (19-OCT-2022) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
RN   [22]
RG   FlyBase
RA   ;
RT   ;
RL   Submitted (13-DEC-2023) to the INSDC.
RL   FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
DR   MD5; a7e46cc8c8ef88ebc795527e75997b1b.
DR   BioSample; SAMN02803731.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..774
FT                   /organism="Drosophila melanogaster"
FT                   /chromosome="X"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:7227"
FT   CDS             join(AE014298.5:5690769..5690988,
FT                   AE014298.5:5691892..5692104,AE014298.5:5692165..5692309,
FT                   AE014298.5:5692377..5692572)
FT                   /codon_start=1
FT                   /gene="cv"
FT                   /gene_synonym="CG12410"
FT                   /gene_synonym="Cv"
FT                   /gene_synonym="cv-1"
FT                   /gene_synonym="Dmel\CG12410"
FT                   /gene_synonym="tsg2"
FT                   /gene_synonym="Tsg2"
FT                   /locus_tag="Dmel_CG12410"
FT                   /product="crossveinless, isoform C"
FT                   /note="CG12410 gene product from transcript CG12410-RC;
FT                   CG12410-PC; cv-PC; crossveinless; twisted gastrulation 2"
FT                   /protein_id="AHN59374.1"
FT                   /translation="MEIWRSLTVGTIVLLAIVCFYGTVESCNEVVCASIVSKCMLTQSC
FT                   KCELKNCSCCKECLKCLGKNYEECCSCVELCPKPNDTRNSLSKKSHVEDFDGVPELFNA
FT                   VATPDEGDSFGYNWNVFTFQVDFDKYLKGPKLEKDGHYFLRTNDKNLDEAIQERDNIVT
FT                   VNCTVIYLDQCVSWNKCRTSCQTTGASSTRWFHDGCCECVGSTCINYGVNESRCRKCPE
FT                   SKGELGDELDDPMEEEMQDFGESMGPFDGPVNNNY"
XX
SQ   Sequence 774 BP; 190 A; 200 C; 235 G; 149 T; 0 other;
     atggaaattt ggcgctcgct cacagtgggc accatcgtgc tattggccat cgtctgcttc        60
     tacggcaccg tggagtcctg caacgaggtc gtctgcgcct cgatcgtctc caagtgcatg       120
     ctcacccaga gctgcaagtg cgagctgaag aactgctcct gctgcaagga gtgcctcaaa       180
     tgcctgggca agaactacga ggagtgctgc agctgtgtgg aactctgtcc gaagcccaac       240
     gacacccgca actcgctgtc caagaagtcc cacgtggagg atttcgatgg agtgccggag       300
     ctcttcaacg ccgtggccac tccggatgag ggcgacagct tcggatacaa ctggaacgtg       360
     ttcacgtttc aagtggattt cgacaagtac ttgaagggac ccaagctgga gaaggacggt       420
     cattacttct tgagaaccaa tgataagaac ctggacgaag cgattcagga gcgtgacaac       480
     attgtgaccg taaactgcac ggttatatat ctggatcagt gcgtgtcgtg gaacaagtgc       540
     cgcaccagct gccagacgac aggcgccagc agtacgagat ggttccacga cggctgctgc       600
     gaatgtgtgg gatccacgtg catcaactac ggcgtaaacg agagccgctg tagaaagtgc       660
     ccggagtcaa agggcgaact gggcgacgag ctggacgatc ccatggagga ggagatgcag       720
     gacttcgggg agagcatggg tccgttcgat ggacccgtga acaacaacta ctga             774
//