ID   ALN12249; SV 1; linear; viral cRNA; STD; VRL; 2151 BP.
XX
PA   KT932364.1
XX
DT   03-JAN-2016 (Rel. 127, Created)
DT   03-JAN-2016 (Rel. 127, Last updated, Version 1)
XX
DE   Influenza A virus (A/ruddy turnstone/Ilha de Canelas/A08/2008(H11N9))
DE   polymerase PA
XX
KW   .
XX
OS   Influenza A virus (A/ruddy turnstone/Ilha de Canelas/A08/2008(H11N9))
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes;
OC   Articulavirales; Orthomyxoviridae; Alphainfluenzavirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RX   PUBMED; 26689791.
RA   Hurtado R., Fabrizio T., Vanstreels R.E., Krauss S., Webby R.J.,
RA   Webster R.G., Durigon E.L.;
RT   "Molecular Characterization of Subtype H11N9 Avian Influenza Virus Isolated
RT   from Shorebirds in Brazil";
RL   PLoS One 10(12):E0145627-E0145627(2015).
XX
RN   [2]
RA   Hurtado R., Fabrizio T., Vanstreels R.E.T., Krauss S., Webby R.J.,
RA   Webster R.G., Durigon E.L.;
RT   ;
RL   Submitted (19-OCT-2015) to the INSDC.
RL   Department of Preventive Veterinary Medicine and Animal Health, School of
RL   Veterinary Medicine and Animal Science, University of Sao Paulo, Avenida
RL   Professor Orlando Marques de Paiva 87, Sao Paulo, Sao Paulo 05508270,
RL   Brazil
XX
DR   MD5; 7c3cc4e8d3e85b1c080a5f37ff2069cd.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2151
FT                   /organism="Influenza A virus (A/ruddy turnstone/Ilha de
FT                   Canelas/A08/2008(H11N9))"
FT                   /segment="3"
FT                   /host="Arenaria interpres (ruddy turnstone)"
FT                   /strain="A/ruddy turnstone/Ilha de Canelas/A08/2008"
FT                   /isolate="A08"
FT                   /serotype="H11N9"
FT                   /mol_type="viral cRNA"
FT                   /country="Brazil:Ilha de Canelas, Para"
FT                   /lat_lon="0.79 S 46.72 W"
FT                   /collection_date="25-Nov-2008"
FT                   /db_xref="taxon:1419066"
FT   CDS             KT932364.1:25..2175
FT                   /codon_start=1
FT                   /gene="PA"
FT                   /product="polymerase PA"
FT                   /db_xref="GOA:A0A0U2Q8K4"
FT                   /db_xref="InterPro:IPR001009"
FT                   /db_xref="InterPro:IPR037534"
FT                   /db_xref="InterPro:IPR038372"
FT                   /db_xref="UniProtKB/TrEMBL:A0A0U2Q8K4"
FT                   /protein_id="ALN12249.1"
FT                   /translation="MEDFVRQCFNPMIVELAEKAMKEYGENPKIETNKFAAICTHLEVC
FT                   FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRTMAWTVVNSICNTTGVDKPK
FT                   FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL
FT                   DEESRARIKTRLFTIRQEMASRGLWDSFRQSERGEETIEERFEITGTMRRLADQSLPPN
FT                   FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNARIEPFLKTTPRPLKLPDGPPCSQRSK
FT                   FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPNIVKPHEKGINPNYLLAWKQ
FT                   VLAELQDLESEEKIPKTKNMKKTSQLKWTLGENMAPEKVDFEDCKDVGDLKQYDSDEPE
FT                   PRSLASWIQSEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY
FT                   IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV
FT                   VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK
FT                   WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPKGVEEGSIGK
FT                   VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLVVQALRDNLEPGTFDLGGLYEAIEECL
FT                   INDPWVLLNASWFNSFLTHALK"
XX
SQ   Sequence 2151 BP; 719 A; 437 C; 510 G; 485 T; 0 other;
     atggaagact ttgtgcgaca atgcttcaat ccaatgatcg tcgagcttgc ggaaaaggca        60
     atgaaagagt atggggaaaa tccaaaaatc gaaactaaca aattcgctgc aatatgcact       120
     cacttggaag tatgtttcat gtattcagac ttccacttca tagacgaacg gggcgaatca       180
     ataattgtgg aatctggtga tccaaatgca ttactgaagc accgatttga gataattgaa       240
     ggaagagacc gaacgatggc ctggacagtg gtgaatagca tctgcaacac cacaggggtc       300
     gataagccta aattcctccc ggacctgtac gattacaagg aaaaccgatt tattgaaatt       360
     ggagtgacac ggagagaggt ccatatatac tatctagaga aagccaataa aataaaatcc       420
     gagaagacac acatccacat tttttcattt actggagaag aaatggccac aaaagcagac       480
     tacacccttg acgaagaaag cagagcaagg atcaaaacca ggctattcac tataagacaa       540
     gaaatggcca gcagaggcct atgggattcc tttcgtcaat ccgaaagagg cgaagagaca       600
     attgaagaaa gatttgaaat cacaggaacc atgcgtaggc ttgccgacca aagtctccca       660
     ccgaacttct ccagccttga aaactttaga gcctatgtgg atggattcga accgaacggc       720
     tgcattgagg gcaagctttc tcaaatgtca aaagaagtga atgccagaat tgaaccattt       780
     ctgaagacaa caccacgccc tctcaaacta cctgatgggc ccccttgctc tcagcggtca       840
     aaattccttc tgatggatgc cttgaaacta agcattgaag acccaagtca tgagggagag       900
     gggataccac tatatgatgc aatcaaatgc atgaagacat tttttggctg gaaagagccc       960
     aacatagtca aaccacatga gaaaggcata aatcccaatt accttctggc ttggaagcaa      1020
     gtgctagcag aactccagga ccttgagagt gaggagaaga tcccaaagac aaagaacatg      1080
     aagaaaacaa gccaattgaa gtggacactt ggtgagaaca tggcaccaga aaaagtggac      1140
     tttgaggatt gcaaggatgt tggcgatcta aaacagtacg atagcgatga gccagagcct      1200
     agatcgctag caagctggat ccagagtgag ttcaataagg cgtgtgaatt gaccgactca      1260
     agttggatag aacttgatga aataggggaa gatgttgctc cgattgaaca cattgcaagc      1320
     atgaggagga actatttcac agcagaagtg tcccattgca gagccactga atacataatg      1380
     aagggagtct acataaatac agccctactc aatgcatctt gtgcagccat ggatgatttt      1440
     cagctgattc caatgataag caaatgtagg acaaaggaag gaagacggaa aacaaacctg      1500
     tacgggttca tcataaaggg gaggtctcat ttgagaaatg atactgatgt ggtaaatttt      1560
     gtgagcatgg aattttctct cactgaccca agactagaac cacacaaatg ggaaaagtac      1620
     tgtgttctcg aaataggaga catgcttctg aggactgcaa taggccaggt gtcaaggccc      1680
     atgttcctgt atgttagaac aaatgggacc tccaagatca agatgaaatg gggtatggaa      1740
     atgaggcgct gccttcttca atctcttcaa cagattgaga gcatgatcga ggccgagtct      1800
     tctgtcaaag aaaaggacat gactaaagaa ttctttgaaa acaagtcgga aacgtggcca      1860
     attggagaat cccccaaagg ggtagaggaa ggctctatcg gaaaagtttg caggacacta      1920
     cttgcgaaat ctgtattcaa cagtctatac gcatctccac aacttgaggg attttcagct      1980
     gaatcaagga aattgcttct cgttgttcag gcgcttaggg acaacctgga acctggaacc      2040
     ttcgatcttg gagggctata cgaagcaatt gaggaatgcc tgattaatga tccctgggtt      2100
     ttgcttaatg catcttggtt caactccttc ctcacacatg cactgaaata g               2151
//