ID ANE14433; SV 1; linear; genomic DNA; STD; MAM; 1140 BP.
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PA KU290646.1
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DT 19-MAY-2016 (Rel. 128, Created)
DT 26-MAY-2016 (Rel. 128, Last updated, Version 2)
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DE Canis lupus familiaris (dog) cytochrome b
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KW .
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OS Canis lupus familiaris (dog)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis.
OG Mitochondrion
XX
RN [1]
RC Publication Status: Online-Only
RX PUBMED; 27185408.
RA Strakova A., Ni Leathlobhair M., Wang G.D., Yin T.T., Airikkala-Otter I.,
RA Allen J.L., Allum K.M., Bansse-Issa L., Bisson J.L.,
RA Castillo Domracheva A., de Castro K.F., Corrigan A.M., Cran H.R.,
RA Crawford J.T., Cutter S.M., Delgadillo Keenan L., Donelan E.M.,
RA Faramade I.A., Flores Reynoso E., Fotopoulou E., Fruean S.N.,
RA Gallardo-Arrieta F., Glebova O., Hafelin Manrique R.F., Henriques J.J.,
RA Ignatenko N., Koenig D., Lanza-Perea M., Lobetti R., Lopez Quintana A.M.,
RA Losfelt T., Marino G., Martincorena I., Martinez Castaneda S.,
RA Martinez-Lopez M.F., Meyer M., Nakanwagi B., De Nardi A.B., Neunzig W.,
RA Nixon S.J., Onsare M.M., Ortega-Pacheco A., Peleteiro M.C., Pye R.J.,
RA Reece J.F., Rojas Gutierrez J., Sadia H., Schmeling S.K., Shamanova O.,
RA Ssuna R.K., Steenland-Smit A.E., Svitich A., Thoya Ngoka I., Vitalaru B.A.,
RA de Vos A.P., de Vos J.P., Walkinton O., Wedge D.C., Wehrle-Martinez A.S.,
RA van der Wel M.G., Widdowson S.A., Murchison E.P.;
RT "Mitochondrial genetic diversity, selection and recombination in a canine
RT transmissible cancer";
RL elife 5:E14552-E14552(2016).
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RN [2]
RA Strakova A., Lawlor M., Wang G.-D., Yin T.-T., Airikkala-Otter I.,
RA Allen J.L., Allum K.M., Bansse-Issa L., Bisson J.L.,
RA Castillo Domracheva A., de Castro K.F., Corrigan A.M., Cran H.R.,
RA Crawford J.T., Cutter S.M., Delgadillo Keenan L., Donelan E.M.,
RA Faramade I.A., Flores Reynoso E., Fotopoulou E., Fruean S.N.,
RA Gallardo-Arrieta F., Glebova O., Hafelin Manrique R.F., Henriques J.J.G.P.,
RA Ignatenko N., Koenig D., Lanza-Perea M., Lobetti R., Lopez Quintana A.M.,
RA Losfelt T., Marino G., Martincorena I., Martinez Castaneda S.,
RA Martinez-Lopez M.F., Meyer M., Nakanwagi B., Barboza De Nardi A.,
RA Neunzig W., Nixon S.J., Onsare M.M., Ortega-Pacheco A., Peleteiro M.C.,
RA Pye R.J., Reece J.F., Rojas Gutierrez J., Sadia H., Schmeling S.K.,
RA Shamanova O., Ssuna R.K., Steenland-Smit A.E., Svitich A.J.,
RA Thoya Ngoka I., Vitalaru B.A., de Vos A.P., de Vos J.P., Walkinton O.,
RA Wedge D.C., Wehrle-Martinez A.S., van der Wel M.G., Widdowson S.A.E.,
RA Murchison E.P.;
RT ;
RL Submitted (10-DEC-2015) to the INSDC.
RL Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire CB10 1SA, UK
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DR MD5; 663ed4cc0a25ca3c83b47f07772d66a5.
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FH Key Location/Qualifiers
FH
FT source 1..1140
FT /organism="Canis lupus familiaris"
FT /organelle="mitochondrion"
FT /sub_species="familiaris"
FT /isolate="420T"
FT /mol_type="genomic DNA"
FT /country="Chile"
FT /isolation_source="CTVT Clade 1 tumour"
FT /haplotype="CTVT_1B2b2_16"
FT /db_xref="taxon:9615"
FT CDS KU290646.1:14183..15322
FT /codon_start=1
FT /transl_table=2
FT /gene="CYTB"
FT /product="cytochrome b"
FT /db_xref="GOA:A0A172R8J9"
FT /db_xref="InterPro:IPR005797"
FT /db_xref="InterPro:IPR005798"
FT /db_xref="InterPro:IPR016174"
FT /db_xref="InterPro:IPR027387"
FT /db_xref="InterPro:IPR030689"
FT /db_xref="InterPro:IPR036150"
FT /db_xref="UniProtKB/TrEMBL:A0A172R8J9"
FT /protein_id="ANE14433.1"
FT /translation="MTNIRKTHPLAKIVNNSFIDLPAPSNISAWWNFGSLLGVCLILQI
FT LTGLFLTMHYTSDTATAFSSVTHICRDVNYGWIIRYMHANGASMFFICLFLHVGRGLYY
FT GSYVFMETWNIGIVLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEW
FT IWGGFSVDKATLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPSGITSDSDKIPFHP
FT YYTIKDILGALLLLLILMSLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFTYAIL
FT RSIPNKLGGVLALVFSILILAFIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGG
FT QPVEHPFIIIGQVASILYFTILLILMPTVSVIENNLLKW"
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SQ Sequence 1140 BP; 334 A; 318 C; 156 G; 332 T; 0 other;
atgaccaaca ttcgaaaaac ccacccacta gccaaaattg ttaataactc attcattgac 60
ctcccagcgc cgtctaacat ctctgcttga tggaacttcg gatccttact aggagtatgc 120
ttgattctac agattctaac aggtttattc ttaactatgc actatacatc ggacacagcc 180
acagcttttt catcagtcac ccacatctgc cgagacgtta actacggctg aattatccgc 240
tatatgcacg caaatggcgc ttccatattc tttatctgcc tattcctaca tgtaggacga 300
ggcctatatt acggatccta tgtattcata gaaacatgaa acattggaat tgtactatta 360
ttcgcaacca tagccacagc attcatgggc tatgtactac catgaggaca aatatcattt 420
tgaggagcaa ctgtaatcac taatcttctc tctgccatcc cttatatcgg aactgactta 480
gtagaatgga tctgaggcgg cttctcagtg gacaaagcaa ccctaacacg attctttgca 540
ttccatttca tcctcccttt catcatcgca gctctagcaa tagtacacct cctatttcta 600
cacgaaaccg gatccaacaa cccttcagga atcacatcag actcagacaa aattccattt 660
cacccttact acacaatcaa ggatatccta ggagccttac tcctactcct aatcctaata 720
tcactagttt tattttcacc tgacctatta ggagacccag ataactacac ccctgcaaac 780
cccctaaaca cccctccaca tattaaacct gagtgatatt ttctattcac ctatgctatc 840
ctacgatcca ttcctaataa attaggaggt gtactcgccc tagtattctc catcctaatc 900
ttggcattca ttccactcct ccacacatct aagcaacgca gcataatatt ccggcccctt 960
agccaatgcc tattctgact tttagtcgcc gatcttctca ctttaacatg aattggagga 1020
caaccagttg aacacccttt catcattatc ggacaagtcg cttcaatctt atatttcacc 1080
atcttattga tcctaatacc aacagttagc gttatcgaaa acaaccttct aaaatgaaga 1140
//