ID   BAE24311; SV 1; linear; mRNA; HTC; MUS; 843 BP.
XX
PA   AK140275.1
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
XX
DE   Mus musculus (house mouse) hypothetical protein
XX
KW   CAP trapper; HTC; HTC.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 58888903e32c2c61c0b2d0d405ff62f7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..843
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="B230378H06"
FT                   /tissue_type="corpora quadrigemina"
FT                   /db_xref="taxon:10090"
FT   CDS             AK140275.1:151..993
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="putative"
FT                   /note="similar to F-box ONLY protein 17 (UniProt|Q8BKF7,
FT                   evidence: FASTY, 99.6%ID, 100%length, match=840)"
FT                   /db_xref="GOA:Q6DIA9"
FT                   /db_xref="InterPro:IPR001810"
FT                   /db_xref="InterPro:IPR007397"
FT                   /db_xref="InterPro:IPR008979"
FT                   /db_xref="InterPro:IPR036047"
FT                   /db_xref="InterPro:IPR039752"
FT                   /db_xref="MGI:MGI:2685007"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6DIA9"
FT                   /protein_id="BAE24311.1"
FT                   /translation="MGAWISRTRVPTPEPDPQEVLDLSRLPPELLLLVLSHVPPRTLLM
FT                   HCRRVCRAWRALVDGQALWLLLLARDHSAAGRALLTLARRCLPPAHEDTPCPLGQFCAL
FT                   RPLGRNLISNPCGQEGLRKWMVRHGGDGWVVEKNRKPVPGAPSQTCFVTSFSWCRKKQV
FT                   VDLVEKGLWPELLDSGGVEIAVSDWWGARHDSGCKYRLFVTLLDAHQNVIDKFSAVPDP
FT                   IEQWNNDIYLQVTHVFSGIRRGIRFVSFEHWGQDTQFWAGHYGARVTNSSVIIRVCQS"
XX
SQ   Sequence 843 BP; 153 A; 257 C; 264 G; 169 T; 0 other;
     atgggtgcct ggatatccag gacccgggtc ccgacgccgg agcccgaccc ccaggaggtc        60
     ctggacctga gccgtctgcc cccggagctg ctcctgctgg tactgagcca cgtgcccccg       120
     cgcacgctgc tgatgcactg ccgccgagtg tgccgcgcct ggcgcgccct ggtagatggc       180
     caggccctat ggttgctgct gctggcccgt gaccacagcg cagcgggccg cgccctgctg       240
     acactagccc gccgctgtct gccccctgcc cacgaagaca cgccctgccc gctgggccaa       300
     ttctgcgcac tgagaccgct aggacgcaac ctcatcagca acccctgtgg ccaagaaggc       360
     ctgcgcaaat ggatggtgcg gcacggtggg gatggatggg tggtggagaa gaacaggaaa       420
     cctgtacctg gggccccttc acagacctgc ttcgtgactt ccttcagctg gtgtcgcaag       480
     aagcaggtcg tggacctggt ggagaagggt ctgtggccag agctgctgga cagtggtggt       540
     gtggagattg ctgtctctga ctggtgggga gctcgacatg acagtggctg taagtaccgt       600
     ctctttgtca cgcttcttga tgcccaccag aacgtcatag ataagttctc cgctgtgcca       660
     gatcccattg aacagtggaa caatgatatc tacctgcagg tcacccacgt gttctccggc       720
     atcaggaggg gcatacgttt tgtctctttt gaacactggg gccaggacac acagttctgg       780
     gctggccact atggggccag agtgacgaac tccagtgtga tcatacgagt ctgtcagtcc       840
     tag                                                                     843
//