ID   BAE42545; SV 1; linear; mRNA; HTC; MUS; 2607 BP.
XX
PA   AK171589.1
XX
DT   09-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 10)
XX
DE   Mus musculus (house mouse) hypothetical protein
XX
KW   CAP trapper; HTC; HTC.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (14-APR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; af2d150e3fcb4470f39b8dfd316d152f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2607
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="F730314H24"
FT                   /cell_type="B6-derived CD11 +ve dendritic cells"
FT                   /db_xref="taxon:10090"
FT   CDS             AK171589.1:45..2651
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="CD22 antigen (MGD|MGI:88322 GB|L02844, evidence:
FT                   BLASTN, 99%, match=3330)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q3TAX0"
FT                   /db_xref="InterPro:IPR003598"
FT                   /db_xref="InterPro:IPR003599"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR013162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="MGI:MGI:88322"
FT                   /db_xref="UniProtKB/TrEMBL:Q3TAX0"
FT                   /protein_id="BAE42545.1"
FT                   /translation="MRVHYLWLLLILGHVASARYSSANDWTVDHPQTLFAWEGACIRIP
FT                   CKYKTPLPKARLDNILLFQNYEFDKATKKFTGTVLYNATKTEKDPESELYLSKQGRVTF
FT                   LGNRIDNCTLKIHPIRANDSGNLGLRMTAGTERWMEPIHLNVSEKPFQPYIQMPSEIRE
FT                   SQSVTLTCGLNFSCFGYDILLKWFLEDSEITSITSSVTSITSSVTSSIKNVYTESKLTF
FT                   QPKWTDHGKSVKCQVQHSSKVLSERTVRLDVKYTPKLEIKVNPTEVEKNNSVTMTCRVN
FT                   SSNPKLRTVAVSWFKDGRPLEDQELEQEQQMSKLILHSVTKDMRGKYRCQASNDIGPGE
FT                   SEEVELTVHYAPEPSRVHIYPSPAEEGQSVELICESLASPSATNYTWYHNRKPIPGDTQ
FT                   EKLRIPKVSPWHAGNYSCLAENRLGHGKIDQEAKLDVHYAPKAVTTVIQSFTPILEGDS
FT                   VTLVCRYNSSNPDVTSYRWNPQGSGSVLKPGVLRIQKVTWDSMPVSCAACNHKCSWALP
FT                   VILNVHYAPRDVKVLKVSPASEIRAGQRVLLQCDFAESNPAEVRFFWKKNGSLVQEGRY
FT                   LSFGSVSPEDSGNYNCMVNNSIGETLSQAWNLQVLYAPRRLRVSISPGDHVMEGKKATL
FT                   SCESDANPPISQYTWFDSSGQDLHSSGQKLRLEPLEVQHTGSYRCKGTNGIGTGESPPS
FT                   TLTVYYSPETIGKRVALGLGFCLTICILAIWGMKIQKKWKQNRSQQGLQENSSGQSFFV
FT                   RNKKARRTPLSEGPQSQGCYNPAMDDTVSYAILRFPESDTHNTGDAGTPATRAPPPNNS
FT                   DSVTYSVIQKRPMGDYENVNPSCPEDESIHYSELVQFGAGKRPQAKEDVDYVTLKH"
XX
SQ   Sequence 2607 BP; 691 A; 721 C; 669 G; 526 T; 0 other;
     atgcgcgtcc attacctgtg gctcctcttg atcctaggac acgtggcttc ggctcggtac        60
     agctcagcaa atgattggac cgttgaccat ccccaaaccc tctttgcctg ggagggagcc       120
     tgcatcagga ttccttgcaa gtacaaaact ccactaccca aggcacgtct ggacaacatc       180
     ctcctttttc agaactatga gtttgacaag gccaccaaga aattcacagg aactgtcctg       240
     tacaacgcca caaagactga gaaggaccca gagtctgagc tgtacctttc taagcaaggg       300
     agagtaacat ttctggggaa cagaatagac aattgtaccc tgaaaatcca cccgatacgt       360
     gccaatgaca gtgggaatct ggggttgagg atgaccgcag ggactgaacg atggatggag       420
     cccattcacc tcaatgtctc ggagaaaccg ttccaacctt acatccagat gccatcagaa       480
     atccgggaat cccaaagtgt cactctgacc tgtggactga atttctcctg ctttgggtat       540
     gacatcctct tgaagtggtt cctagaagat tctgagatca cctccatcac ctcttctgtc       600
     acctccatca cctcttctgt cacctcctcc attaagaatg tctatacaga gagcaagctc       660
     accttccaac caaagtggac ggaccacgga aagagtgtga agtgccaagt ccagcactcc       720
     tccaaagtgc tctcagagcg cactgtgcgt ctggatgtta agtatacccc gaagctggag       780
     atcaaggtca atcccacaga ggtggaaaag aacaattctg tgaccatgac atgccgggtt       840
     aacagcagca acccgaaact caggaccgtg gcggtgtctt ggttcaagga tgggcgcccc       900
     ctagaggatc aggaactgga acaggaacaa cagatgtcca agctaattct gcattcagtg       960
     accaaggaca tgagagggaa ataccggtgc caggcttcca acgacatagg cccaggagag      1020
     tcggaagaag tggaactcac ggtgcactat gctccagaac cctccagggt tcacatctac      1080
     ccttcccccg ctgaagaggg acagtcagta gagctgattt gtgagtcact ggccagtcca      1140
     agtgcaacaa actacacctg gtatcacaac aggaaaccta tacctggaga cacccaagag      1200
     aagctccgca tccctaaagt ctccccgtgg catgctggga attactcttg cttggcagag      1260
     aaccgtctgg gtcatggaaa gatagaccag gaagctaagc tggatgtcca ttatgctccc      1320
     aaggcggtga ccacagtgat tcagagcttc acaccaatcc tggaaggaga cagtgtgacc      1380
     ctggtctgta ggtacaactc cagcaatcca gacgtcacct cctacagatg gaaccctcaa      1440
     ggttctggga gtgtgctcaa acccggagtg ctgaggattc agaaagtgac atgggattcc      1500
     atgcctgtca gctgtgctgc ctgcaaccac aagtgttcgt gggccctccc tgtcatcctg      1560
     aatgtccact acgcccccag agacgtgaag gtactgaagg taagccccgc atcagagatc      1620
     cgcgctgggc agcgtgtcct cctccaatgc gacttcgcag agagcaaccc ggcagaggtc      1680
     cgcttcttct ggaagaagaa tgggagtctc gtgcaggaag ggaggtacct gagcttcggc      1740
     tccgtctccc cagaagattc tggaaattat aactgcatgg tcaacaactc catcggagag      1800
     accttgtcac aggcctggaa cctccaagtg ctgtatgctc ctcggaggct gcgtgtgtcc      1860
     atcagccctg gggaccatgt gatggagggg aagaaggcca ccttgtcctg tgagagtgat      1920
     gccaatccgc ccatctcaca gtacacctgg tttgactcca gtggccaaga cctccactcc      1980
     tcaggccaga aactgagact ggaacccctg gaggtccaac acacgggttc ctaccgctgc      2040
     aaagggacca atgggatagg cacaggagag tcaccaccca gcaccctcac tgtctactac      2100
     agtccagaga ccatcggcaa gcgggtcgcc ttgggactag gcttctgcct gactatctgc      2160
     atcctggcca tctgggggat gaaaatccag aaaaaatgga agcaaaaccg cagccagcag      2220
     gggcttcagg aaaattccag tggccagagc ttttttgtga ggaacaaaaa ggctaggagg      2280
     acccctctct cagaaggccc ccaatcccag ggatgctaca atccggcaat ggatgacacc      2340
     gttagttatg ccatcttgcg ctttccagag agtgacacgc acaacactgg agatgcaggg      2400
     accccagcaa cacgggctcc tcctccaaac aacagcgact cggtcactta ctcggtgata      2460
     cagaagcggc ctatggggga ttatgagaat gtgaatccga gctgcccgga ggatgagagc      2520
     atccattact cagagctggt tcagtttggg gctggtaagc ggccccaggc aaaggaagac      2580
     gtagactatg tgaccctcaa gcactga                                          2607
//