ID   CAD92443; SV 1; linear; mRNA; STD; MAM; 3354 BP.
XX
PA   AJ564972.1
XX
DT   03-JUN-2004 (Rel. 80, Created)
DT   03-JUN-2004 (Rel. 80, Last updated, Version 1)
XX
DE   Sus scrofa (pig) partial protocadherin
XX
KW   .
XX
OS   Sus scrofa (pig)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RA   Blanco-Arias P.;
RT   ;
RL   Submitted (03-JUN-2003) to the INSDC.
RL   Blanco-Arias P., Pathology, University of Cambridge, Tennis Court Rd, CB2
RL   1QP, UNITED KINGDOM.
XX
RN   [2]
RA   Blanco-Arias P., Sargent C.A., Affara N.A.;
RT   "A comparative study among pig, mouse and human Pcdhx";
RL   Unpublished.
XX
DR   MD5; e1b466d7d6b80a48c48cbf088c342b4c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3354
FT                   /organism="Sus scrofa"
FT                   /map="Xq"
FT                   /mol_type="mRNA"
FT                   /tissue_type="brain"
FT                   /db_xref="taxon:9823"
FT   CDS             AJ564972.1:<403..3756
FT                   /codon_start=1
FT                   /gene="PCDHX"
FT                   /product="protocadherin"
FT                   /db_xref="GOA:Q6KEQ9"
FT                   /db_xref="InterPro:IPR002126"
FT                   /db_xref="InterPro:IPR013164"
FT                   /db_xref="InterPro:IPR013585"
FT                   /db_xref="InterPro:IPR015919"
FT                   /db_xref="InterPro:IPR020894"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6KEQ9"
FT                   /protein_id="CAD92443.1"
FT                   /translation="MDLLSGTHIFAVLLACIVFQSGAQEKNYTIREEMPENVLIGDLLK
FT                   DLNLSLIPDRSLTTPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGIVVDA
FT                   HCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSRYALPAT
FT                   IDPDTGINGVQNYHLIKGQSIFGLDVIETPEGEKMPQLIVQKELDREEKDTYVMKIKVE
FT                   DGGFPQRSSTAILQVSVADTNDNRPVFKENEIEVSIPENAPVGSSVTQLHATDADIGEN
FT                   AKIHFYFSNLISNMAKKLFHLNSTTGLITIKEPLDREESPNHKLLVLASDGGLTPARAM
FT                   VLVNVTDINDNIPSIDIRYIINPINGTVVLSENAPLNTKIALITVTDKDADHNGWVSCF
FT                   TDHEVPFRLRPVFSNQFLLETAAYLDYESTREYAIKLLAADAGKPPLNQSSMLLIKVKD
FT                   ENDNAPVFTQPFLSLSVPENNSPGTQLTKISAMDADSGRNAEINYLLGFDAPSEFNLDH
FT                   RTGILTAVKKLDREKQEKYSFTVLAKDNGMPPLMTNATVLVTVLDQNDNSPVFTHNEYN
FT                   FYVPENLPRHGTVGLITVTDPDYGENSAVILSILDANDDFTIDPQTGVIQPNISFDREK
FT                   QESYTFYVKAEDGGRISRSSTAKVTINVVDVNDNKPVFVVPSSNYSFELVPPSTNPGTV
FT                   VFTVVAIDNDTGMNAELRYSMVGGNTKGLFIIDQTSGNITLKEKCVFADLGLHRLVVKA
FT                   KDLGQPDSLFNVVNVNLFVNESVTNATLIYELVRKNIETPVTQNIETTDASSPSSDYVK
FT                   IVVAIVAGTITVILVIFITAVVRCQQSPHLKAAQKNKQNSEWVTPNPENRQMIMMKKKK
FT                   KKKKKHAPKNLLLNFVTIEEAKADGADNNRSSITLDLPIELEEQTMGKYNWGTTPTTFK
FT                   PDSADLARHYKSASPQPTFQIQPETPLNSKHHIIQELPLDNTFVGCDSISKCSSSSSDP
FT                   YSVSECSYPVTTFKTPVSVHTRPPMKEAIRFHTPMKETTTVEIWTHPQPQRKSEGKRAG
FT                   KSQRRVTFHLPEGSQESSSDGGLGDHDTGSLPSTSHALPLGYPQEEYFDHAAPNNRTEG
FT                   DGNSDPESGK"
XX
SQ   Sequence 3354 BP; 1039 A; 759 C; 697 G; 859 T; 0 other;
     atggacttgt tgtccgggac gcatatattt gcggtcctgt tagcatgcat cgtatttcaa        60
     tctggcgccc aggagaagaa ctacactatc cgggaagaaa tgccagaaaa cgtcctaata       120
     ggcgacttgc tgaaagacct caacttgtcg ctaattccag acaggtccct aacaactcct       180
     atgcagttca agctagtgta taagactggg gatgtgccac tgattcgaat tgaagagggt       240
     actggtgaga tcttcactac tggagctcgc attgatcgtg agaaattatg tgctggtatc       300
     gtggtggatg ctcattgctt ttatgaggtg gaggtcgccg ttctgcctga tgaaatattt       360
     agactggtta agatacgttt tctgatagaa gatataaatg ataatgcacc tttattccca       420
     gcaacagtta tcaacatatc aattccagag aactcggcta taaattctcg gtatgctctc       480
     ccagcgacca ttgatcctga cacaggaata aacggagttc aaaactatca tctaattaag       540
     ggtcaaagta tttttgggct tgatgtcatt gaaacaccag aaggagagaa gatgccacag       600
     ctgatagttc aaaaggagtt agacagggaa gagaaagata catatgtaat gaaaataaag       660
     gttgaagatg gtggctttcc tcaaagatcc agtactgcta ttttgcaagt aagtgttgct       720
     gatacaaatg ataaccgccc agtcttcaag gagaatgaaa ttgaagtcag tataccagaa       780
     aatgctcctg taggttcttc agtgacacag ctccatgcca cagatgccga cataggtgaa       840
     aacgccaaga ttcacttcta tttcagcaat ctaatctcca acatggccaa gaagctgttc       900
     cacctcaact ccactactgg acttataaca attaaagaac cactggatag ggaggaatca       960
     ccaaatcaca aattacttgt tttagcaagt gatggtggat tgacgccagc aagagcaatg      1020
     gtgctagtca atgttacaga tatcaatgat aatatcccat caattgacat aagatacatc      1080
     atcaatccca tcaatggcac tgtggttctt tcagaaaacg ctccactcaa caccaaaatt      1140
     gctctcataa ctgtgacaga taaggatgct gaccataatg gttgggtgtc atgctttaca      1200
     gaccatgagg tccctttcag attaaggcca gtattcagta atcagttcct tctagagact      1260
     gctgcatatc ttgattatga gtccacaaga gaatatgcca ttaaattact ggctgcagat      1320
     gctggcaaac ctcctttgaa tcagtcatcc atgctcctca tcaaagtaaa agatgaaaat      1380
     gacaatgctc cagttttcac tcagcctttc ctaagtcttt ctgttcctga gaataactct      1440
     cctggcaccc aattgacaaa aataagtgca atggatgcag acagtgggcg taatgctgag      1500
     ataaattacc tgctaggctt tgatgctcca tctgaattca acttggatca tcgtacaggc      1560
     attctgaccg cagtgaagaa actggataga gaaaaacagg aaaaatattc attcacagtt      1620
     ctagcaaaag ataatgggat gccaccttta atgaccaatg ccacggtcct tgtgactgtt      1680
     cttgatcaga atgacaacag tccagttttc acgcacaatg agtacaactt ctatgttcca      1740
     gaaaaccttc caagacatgg cacagtagga ctaatcacag taactgatcc tgattatgga      1800
     gaaaattctg cagtcattct ctccatttta gatgcaaatg atgacttcac cattgatcca      1860
     caaactggtg tcatccaacc aaatatctca tttgatagag aaaaacagga atcttatact      1920
     ttctatgtaa aagctgagga tggtggtagg atatcacgtt cttcaactgc caaagtcacc      1980
     ataaatgtgg ttgatgttaa tgacaacaaa ccagtttttg ttgtcccgtc ttccaactac      2040
     tcttttgaac tggttccacc atccactaat ccaggtacag tggtcttcac agtagttgct      2100
     attgacaatg acactggcat gaatgcagag cttcgttata gcatggtagg aggaaacaca      2160
     aaaggtctat ttataattga ccaaacttca ggcaacatta cactgaagga gaaatgtgtc      2220
     tttgcagacc ttggtttaca cagattggta gtcaaagcta aggacttagg acaacctgat      2280
     tctctcttca atgttgtaaa tgtcaatcta tttgtgaatg agtcagtgac caatgctaca      2340
     ctgatttatg aattggtgcg caaaaacatt gaaacaccag tgacccaaaa tattgagaca      2400
     actgatgcat cctcaccatc cagtgactat gtcaagatag tggttgccat tgtggctggc      2460
     accataactg tcatccttgt tattttcatc actgctgtag taagatgcca gcaatcacca      2520
     caccttaagg ctgctcagaa aaacaagcag aattctgaat gggttactcc aaacccagaa      2580
     aacaggcaga tgataatgat gaagaaaaag aagaagaaga agaagaagca tgcacctaag      2640
     aacttgctgc ttaactttgt cactatcgaa gaagctaagg cggatggtgc tgacaacaat      2700
     agaagcagca tcacactaga ccttcccatt gagctggaag agcaaaccat gggcaagtac      2760
     aactggggca ctacacctac tactttcaag cctgacagcg ccgatttggc ccggcactac      2820
     aaatctgcct ctccacagcc taccttccag atccagccag aaactcccct gaattcgaag      2880
     caccacatca tccaggaact gcctcttgat aacaccttcg tgggctgtga ttccatctcc      2940
     aagtgttcct ccagcagttc tgatccctac agtgtttctg agtgcagcta tccagtgaca      3000
     actttcaaga cccctgtgtc tgtgcacacc agaccgccaa tgaaggaggc tatacgattt      3060
     cacactccca tgaaagagac aactactgtg gagatctgga ctcatcccca accacagcgg      3120
     aaatccgagg ggaaaagggc aggaaagtcc cagcggcgtg tcacatttca cctaccagaa      3180
     ggctctcagg aaagcagcag tgatggcgga ctgggagacc atgatacagg cagccttccc      3240
     agcacatccc atgccttgcc ccttggctat cctcaggagg agtactttga tcatgctgca      3300
     cccaacaatc gcactgaagg ggatggcaac tctgatcctg aatctggtaa gtga            3354
//