ID   EAU91058; SV 2; linear; genomic DNA; WGS; FUN; 1125 BP.
XX
PA   AACS02000003.1
XX
PR   Project:PRJNA1447;
XX
DT   17-JUN-2010 (Rel. 105, Created)
DT   11-AUG-2014 (Rel. 121, Last updated, Version 2)
XX
DE   Coprinopsis cinerea okayama7#130 formate dehydrogenase
XX
KW   WGS.
XX
OS   Coprinopsis cinerea okayama7#130
OC   Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes;
OC   Agaricomycetidae; Agaricales; Psathyrellaceae; Coprinopsis.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RX   DOI; 10.1073/pnas.1003391107.
RX   PUBMED; 20547848.
RA   Stajich J.E., Wilke S.K., Ahren D., Au C.H., Birren B.W., Borodovsky M.,
RA   Burns C., Canback B., Casselton L.A., Cheng C.K., Deng J., Dietrich F.S.,
RA   Fargo D.C., Farman M.L., Gathman A.C., Goldberg J., Guigo R., Hoegger P.J.,
RA   Hooker J.B., Huggins A., James T.Y., Kamada T., Kilaru S., Kodira C.,
RA   Kues U., Kupfer D., Kwan H.S., Lomsadze A., Li W., Lilly W.W., Ma L.J.,
RA   Mackey A.J., Manning G., Martin F., Muraguchi H., Natvig D.O.,
RA   Palmerini H., Ramesh M.A., Rehmeyer C.J., Roe B.A., Shenoy N., Stanke M.,
RA   Ter-Hovhannisyan V., Tunlid A., Velagapudi R., Vision T.J., Zeng Q.,
RA   Zolan M.E., Pukkila P.J.;
RT   "Insights into evolution of multicellular fungi from the assembled
RT   chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)";
RL   Proc. Natl. Acad. Sci. U.S.A. 107(26):11889-11894(2010).
XX
RN   [2]
RA   Birren B., Nusbaum C., Abebe A., Abouelleil A., Adekoya E., Ait-zahra M.,
RA   Allen N., Allen T., An P., Anderson M., Anderson S., Arachchi H.,
RA   Armbruster J., Bachantsang P., Baldwin J., Barry A., Bayul T.,
RA   Blitshsteyn B., Bloom T., Blye J., Boguslavskiy L., Borowsky M.,
RA   Boukhgalter B., Brunache A., Butler J., Calixte N., Calvo S., Camarata J.,
RA   Campo K., Chang J., Cheshatsang Y., Citroen M., Collymore A., Considine T.,
RA   Cook A., Cooke P., Corum B., Cuomo C., David R., Dawoe T., Degray S.,
RA   Dodge S., Dooley K., Dorje P., Dorjee K., Dorris L., Duffey N., Dupes A.,
RA   Elkins T., Engels R., Erickson J., Farina A., Faro S., Ferreira P.,
RA   Fischer H., Fitzgerald M., Foley K., Gage D., Galagan J., Gearin G.,
RA   Gnerre S., Gnirke A., Goyette A., Graham J., Grandbois E., Gyaltsen K.,
RA   Hafez N., Hagopian D., Hagos B., Hall J., Hatcher B., Heller A.,
RA   Higgins H., Honan T., Horn A., Houde N., Hughes L., Hulme W., Husby E.,
RA   Iliev I., Jaffe D., Jones C., Kamal M., Kamat A., Kamvysselis M.,
RA   Karlsson E., Kells C., Kieu A., Kisner P., Kodira C., Kulbokas E.,
RA   Labutti K., Lama D., Landers T., Leger J., Levine S., Lewis D., Lewis T.,
RA   Lindblad-toh K., Liu X., Lokyitsang T., Lokyitsang Y., Lucien O., Lui A.,
RA   Ma L.J., Mabbitt R., Macdonald J., Maclean C., Major J., Manning J.,
RA   Marabella R., Maru K., Matthews C., Mauceli E., Mccarthy M., Mcdonough S.,
RA   Mcghee T., Meldrim J., Meneus L., Mesirov J., Mihalev A., Mihova T.,
RA   Mikkelsen T., Mlenga V., Moru K., Mozes J., Mulrain L., Munson G.,
RA   Naylor J., Newes C., Nguyen C., Nguyen N., Nguyen T., Nicol R., Nielsen C.,
RA   Nizzari M., Norbu C., Norbu N., O'donnell P., Okoawo O., O'leary S.,
RA   Omotosho B., O'neill K., Osman S., Parker S., Perrin D., Phunkhang P.,
RA   Piqani B., Purcell S., Rachupka T., Ramasamy U., Rameau R., Ray V.,
RA   Raymond C., Retta R., Richardson S., Rise C., Rodriguez J., Rogers J.,
RA   Rogov P., Rutman M., Schupbach R., Seaman C., Settipalli S., Sharpe T.,
RA   Sheridan J., Sherpa N., Shi J., Smirnov S., Smith C., Sougnez C.,
RA   Spencer B., Stalker J., Stange-thomann N., Stavropoulos S., Stetson K.,
RA   Stone C., Stone S., Stubbs M., Talamas J., Tchuinga P., Tenzing P.,
RA   Tesfaye S., Theodore J., Thoulutsang Y., Topham K., Towey S., Tsamla T.,
RA   Tsomo N., Vallee D., Vassiliev H., Venkataraman V., Vinson J., Vo A.,
RA   Wade C., Wang S., Wangchuk T., Wangdi T., Whittaker C., Wilkinson J.,
RA   Wu Y., Wyman D., Yadav S., Yang S., Yang X., Yeager S., Yee E., Young G.,
RA   Zainoun J., Zembeck L., Zimmer A., Zody M., Lander E.;
RT   ;
RL   Submitted (25-JUL-2003) to the INSDC.
RL   Whitehead Institute/MIT Center for Genome Research, 320 Charles Street,
RL   Cambridge, MA 02142, USA
XX
RN   [3]
RG   The Broad Institute Genome Sequencing Platform
RA   Stajich J.E., Pukkila P., Dietrich F., Farman M., Gathman A., Hoegger P.,
RA   Kilaru S., Kues U., Lilly W., Mackey A.J., Muraguchi H., Rehmeyer C.,
RA   Stanke M., Velagapudi R., Wilke S., Borodovsky M., Guigo R., Young S.K.,
RA   Kodira C.D., Zeng Q., Koehrsen M., Alvarado L., Berlin A., Borenstein D.,
RA   Chen Z., Engels R., Freedman E., Gellesch M., Goldberg J., Griggs A.,
RA   Gujja S., Heiman D., Hepburn T., Howarth C., Jen D., Larson L., Lewis B.,
RA   Mehta T., Park D., Pearson M., Roberts A., Saif S., Shea T., Shenoy N.,
RA   Sisk P., Stolte C., Sykes S., Walk T., White J., Yandava C., Galagan J.,
RA   Nusbaum C., Birren B.;
RT   ;
RL   Submitted (11-JUN-2010) to the INSDC.
RL   Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA
RL   02142, USA
XX
DR   MD5; 825a55ffb7b2b85b5c5c9ceb48eca368.
DR   BioSample; SAMN02953595.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1125
FT                   /organism="Coprinopsis cinerea okayama7#130"
FT                   /chromosome="3"
FT                   /strain="okayama7#130"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:240176"
FT   CDS             complement(join(AACS02000003.1:2608736..2608779,
FT                   AACS02000003.1:2608833..2609232,
FT                   AACS02000003.1:2609282..2609325,
FT                   AACS02000003.1:2609377..2609551,
FT                   AACS02000003.1:2609606..2609692,
FT                   AACS02000003.1:2609757..2609849,
FT                   AACS02000003.1:2609989..2610016,
FT                   AACS02000003.1:2610151..2610185,
FT                   AACS02000003.1:2610254..2610345,
FT                   AACS02000003.1:2610416..2610461,
FT                   AACS02000003.1:2610513..2610587,
FT                   AACS02000003.1:2610654..2610659))
FT                   /codon_start=1
FT                   /locus_tag="CC1G_03226"
FT                   /product="formate dehydrogenase"
FT                   /db_xref="EnsemblGenomes-Gn:CC1G_03226"
FT                   /db_xref="EnsemblGenomes-Tr:EAU91058"
FT                   /db_xref="GOA:A8N783"
FT                   /db_xref="InterPro:IPR006139"
FT                   /db_xref="InterPro:IPR006140"
FT                   /db_xref="InterPro:IPR029752"
FT                   /db_xref="InterPro:IPR029753"
FT                   /db_xref="InterPro:IPR033689"
FT                   /db_xref="InterPro:IPR036291"
FT                   /db_xref="UniProtKB/TrEMBL:A8N783"
FT                   /protein_id="EAU91058.2"
FT                   /translation="MKVLAILYDGGKAAEEEPRLLGTTENKLGIKDWLESLGHELVAVH
FT                   PASTQRAIIQVSSSKEGPDSDFQKHIVDAEVLITTPFHPGYLTRELIEKAKNLKLCITA
FT                   GVGSDHIDLNAAVDHRIQVLEVSGSNVVSVAEHVVMSILLLVRNFVPAHEMIERGDWEV
FT                   ARIARNAFDLEGKVVGTIGAGRIGYRVLQRLLPFDCKELLYYDYAPLPPAAAEAVKTRR
FT                   VEDLKDFVSQCDVITVNCPLHEGTRGLVNADLLKHFKKGAWLVNTARGAICDKDAVAEA
FT                   LKSGQLSGYAGDVWDVQPAPKDHVWRTAKNPLGGGNGMVPHYSGTTLDAQARYANGAKQ
FT                   ILENYLNGKAQDPQNIIVGLGRYETTAYGQRDKK"
XX
SQ   Sequence 1125 BP; 256 A; 314 C; 298 G; 257 T; 0 other;
     atgaaggtcc tcgctattct ctacgacggt ggcaaagctg ctgaagaaga gcctcgtctc        60
     ctcggtacta ccgagaacaa gttgggcatc aaggattggc tcgaatccct tgggcatgag       120
     cttgtcgcgg tccaccctgc tagcacacag cgagcgatta tccaggtatc cagcagcaag       180
     gaaggccccg atagcgactt tcaaaagcac atcgtcgacg ctgaagtatt gattaccacc       240
     ccgttccatc ctgggtacct gacccgggaa ctcattgaga aggctaaaaa cctgaagttg       300
     tgcatcactg ctggagttgg ttccgatcac atcgacttga acgccgctgt cgaccatcgt       360
     attcaagtat tggaggtctc tggctccaat gtagtatctg tcgccgagca tgtcgttatg       420
     agtatcctct tgctcgtccg caactttgtt cctgctcacg agatgattga gcgtggtgat       480
     tgggaagtag ctcgtattgc acgaaacgct ttcgacctgg aaggcaaggt cgttggaacc       540
     attggtgctg gccgaattgg atatcgtgtc cttcagcgac tcttaccctt cgactgcaag       600
     gagcttttgt actatgacta tgctcctctt cctcctgctg ccgctgaggc cgtcaagacc       660
     cgccgtgtcg aggatctcaa ggacttcgtc tcccaatgcg acgtgatcac tgtcaactgc       720
     cccttgcacg aaggaactcg tggcctcgtc aacgcggacc tcctcaaaca cttcaagaag       780
     ggtgcttggc tcgtcaacac tgctcgcggt gccatctgtg acaaggatgc cgttgctgaa       840
     gccctcaaat ccggacaact ctccggctac gcaggcgatg tgtgggacgt ccagccagct       900
     cccaaggatc acgtctggcg taccgccaag aacccgcttg gaggaggaaa cggcatggtt       960
     cctcactact caggtacgac tttggatgcg caggccaggt atgcgaatgg cgcgaagcag      1020
     attttggaga actatctcaa tgggaaggcg caagaccccc agaacatcat cgtcggtctt      1080
     ggtcgctacg agaccacagc ttatggccaa cgcgacaaga aatga                      1125
//