ID HDB14002; SV 1; linear; transcribed RNA; TSA; MAM; 2190 BP. XX PA DQIR01158525.1 XX PR Project:PRJNA480168; XX DT 04-APR-2019 (Created) DT 04-APR-2019 (Last updated) XX DE Sus scrofa (pig) ubiquitin carboxyl-terminal hydrolase BAP1 XX KW TPA; TSA; TPA:assembly; Third Party Data; Transcriptome Shotgun Assembly. XX OS Sus scrofa (pig) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus. XX RN [1] RC Publication Status: Online-Only RX PUBMED; 30723633. RA Gilbert D.G.; RT "Genes of the pig, Sus scrofa, reconstructed with EvidentialGene"; RL Peerj 7:0-e6374(2019). XX RN [2] RA Gilbert D.G.; RT ; RL Submitted (28-JUL-2018) to the INSDC. RL Indiana University, IN, USA XX DR MD5; bfc417b4f6e0051e68b8d3d20ebcd11d. DR BioSample; SAMEA3303526. DR BioSample; SAMEA3303527. DR BioSample; SAMEA3303528. DR BioSample; SAMEA3303529. DR BioSample; SAMEA3303531. DR BioSample; SAMEA3303532. DR BioSample; SAMEA4447539. DR BioSample; SAMEA4447549. DR BioSample; SAMEA4447554. DR BioSample; SAMN02925400. DR BioSample; SAMN02925407. DR BioSample; SAMN05952593. DR BioSample; SAMN05952594. DR BioSample; SAMN05952595. DR BioSample; SAMN05952596. DR BioSample; SAMN05952612. DR BioSample; SAMN05952613. DR BioSample; SAMN05952614. DR BioSample; SAMN05952615. DR BioSample; SAMN05952626. DR BioSample; SAMN07956242. DR BioSample; SAMN07956243. DR BioSample; SAMN07956244. DR BioSample; SAMN07956245. DR BioSample; SAMN07956246. DR BioSample; SAMN07956247. XX FH Key Location/Qualifiers FH FT source 1..2190 FT /organism="Sus scrofa" FT /mol_type="transcribed RNA" FT /db_xref="taxon:9823" FT /submitter_seqid="Susscr4EVm004345t2" FT CDS DQIR01158525.1:63..2252 FT /codon_start=1 FT /product="ubiquitin carboxyl-terminal hydrolase BAP1" FT /note="original_id:Susscrtridba1a_sRn1l2SRR5027063idbaidbt FT k27Loc44653; located at chr13:34545408-34553423:-, 100 pct FT aligned, 17 exons; protein is 100 pct similar to FT human18nc:NP_004647.1 gene.; FT db_xref_other:GenBank:NP_004647.1; FT db_xref_other:busco:EOG090B02LA; FT db_xref_other:pig18ncrf:XM_001925236.6" FT /inference="similar to AA sequence:GenBank:NP_004647.1" FT /protein_id="HDB14002.1" FT /translation="MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYG FT FIFLFKWIEERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCS FT SVDLGPTLSRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVR FT TMEAFHFVSYVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEP FT YHDIRFNLMAVVPDRRIKYEARLHVLKVNRQTILESLQQLIRVTQPELIQTHKSQESQL FT PEESKPVSSKSPLSVEANRASVASEGTHTDGVEEVAGSCPQALTHSPPSKPKLMVKPPG FT SSLNGVPPNPTPIVQRLPAFLDNHNYAKSPMQEEEDLAAGVGRSRVPIRPPQQYSDDED FT DYEDDEEDDMQNTNSAIRYKRKGPGKPGPLSGSGDGQLSVLQPNTINVLAEKLKESQKD FT LSIPLSIKTSSGAGSPAVAVPTHSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPT FT RPSSPVTSHISKVLFGEDDSLLRVDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALT FT ESGKGSSPSVRLSQSSHGSGSPEEKDMVEAMDGREKPGLVRPGEPLSGEKYSPKELLAL FT LKCVEAEIANYEACLKEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQ FT NISVRRRQGVSIGRLHKQRKPDRRKRSRPYKAKRQ" XX SQ Sequence 2190 BP; 521 A; 620 C; 636 G; 413 T; 0 other; atgaataagg gctggctgga gctggagagc gaccctggcc tcttcaccct cctggtggaa 60 gattttggtg tcaaaggggt gcaggtggag gagatctatg accttcagag caaatgccag 120 ggccctgtgt atggattcat cttcctgttc aaatggatcg aagaacgccg atcccgtcgc 180 aaggtctcta ccttggtgga tgatacatct gtgattgatg atgatattgt gaataacatg 240 ttctttgccc accagctgat ccccaactct tgcgccactc atgccctgct gagtgtgctc 300 ctgaactgca gcagtgtgga cctggggcct accctgagtc gcatgaagga cttcaccaaa 360 ggcttcagcc ctgagagcaa aggatatgcg attggcaatg ctccggagct ggccaaggca 420 cataatagcc atgccaggcc cgagccacgc cacctccctg agaagcagaa tggccttagt 480 gcagtgcgga ccatggaggc attccacttt gtcagctatg tgcctatcac aggccggctt 540 tttgagctcg atgggctgaa ggtctacccc attgaccatg ggccctgggg ggaggatgag 600 gaatggacag acaaggcccg gcgggtcatc atggagcgta tcggccttgc cactgcaggg 660 gagccctacc atgacatccg cttcaacctg atggcggtgg tgcctgaccg caggatcaag 720 tacgaggcca ggctgcatgt gctgaaggtg aaccgtcaga caatactgga gtcgctgcag 780 cagctgatta gggtaaccca gccagagctg attcaaaccc acaagtctca agagtcacag 840 ttgcctgaag agtccaaacc agtcagcagc aagtccccgc tttcggtgga agcaaacagg 900 gcctcagtgg cctctgaggg cactcacaca gatggtgtgg aggaagtggc tggttcgtgc 960 ccacaagccc tgacccacag ccctcccagc aaacccaagc tgatggtgaa gcctccaggg 1020 agcagcctca atggggttcc ccccaacccc actccgattg tccagcggct gccagccttt 1080 ctggacaatc acaactatgc caagtccccc atgcaggagg aggaagacct ggcagcaggc 1140 gtgggccgca gccgagttcc aatccgccca ccccagcagt attcagacga tgaggatgac 1200 tatgaggatg acgaggagga tgacatgcag aataccaact ccgccatcag gtataagcga 1260 aagggtccag ggaagccagg gccattgagt ggctctggag atgggcagct ctccgtgctg 1320 cagcccaaca ccatcaacgt cttagctgag aagctcaaag aatctcagaa agacctctcc 1380 attcctctgt ccatcaagac aagcagcggg gctgggagtc cggctgtggc agtgcccaca 1440 cactcgcagc cctcacccac ccccagcaat gagagcacgg acacagcctc tgagattggc 1500 agtgctttca attcaccact gcgctcgccc atccgctcgg ccaaccccac gcggccctct 1560 agccccgtca cctcccacat ctccaaggtg ctgtttggag aggacgacag cttgctgcgt 1620 gttgactgca tacgctacaa tcgcgctgta cgtgacctgg gtcctgttat aagcacaggc 1680 ctgctgcacc tggctgagga tggcgtgctg agtcccctag cactgacaga gagtgggaag 1740 ggttcctccc cttctgtcag actgagccaa agcagccatg ggtctggcag cccggaggag 1800 aaggacatgg tagaagctat ggatggcaga gagaagcctg ggttggtcag gcctggcgag 1860 cctttgagtg gggagaagta ttcacccaag gagctgctgg cattgctgaa gtgtgtggaa 1920 gctgagatcg caaactatga ggcctgcctc aaggaagaag tggagaagag gaagaagttc 1980 aagattgacg accagagaag gactcacaac tacgatgagt tcatctgcac cttcatctcc 2040 atgctggctc aggaaggcat gctggccaac ctagtggagc agaacatctc agtgcggcgg 2100 cgccagggtg tcagcattgg tcggctccac aagcagcgga agcccgaccg gcggaaacgg 2160 tcacgcccct acaaagccaa gcgccagtga 2190 //