ID   HDB14002; SV 1; linear; transcribed RNA; TSA; MAM; 2190 BP.
XX
PA   DQIR01158525.1
XX
PR   Project:PRJNA480168;
XX
DT   04-APR-2019 (Created)
DT   04-APR-2019 (Last updated)
XX
DE   Sus scrofa (pig) ubiquitin carboxyl-terminal hydrolase BAP1
XX
KW   TPA; TSA; TPA:assembly; Third Party Data; Transcriptome Shotgun Assembly.
XX
OS   Sus scrofa (pig)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus.
XX
RN   [1]
RC   Publication Status: Online-Only
RX   PUBMED; 30723633.
RA   Gilbert D.G.;
RT   "Genes of the pig, Sus scrofa, reconstructed with EvidentialGene";
RL   Peerj 7:0-e6374(2019).
XX
RN   [2]
RA   Gilbert D.G.;
RT   ;
RL   Submitted (28-JUL-2018) to the INSDC.
RL   Indiana University, IN, USA
XX
DR   MD5; bfc417b4f6e0051e68b8d3d20ebcd11d.
DR   BioSample; SAMEA3303526.
DR   BioSample; SAMEA3303527.
DR   BioSample; SAMEA3303528.
DR   BioSample; SAMEA3303529.
DR   BioSample; SAMEA3303531.
DR   BioSample; SAMEA3303532.
DR   BioSample; SAMEA4447539.
DR   BioSample; SAMEA4447549.
DR   BioSample; SAMEA4447554.
DR   BioSample; SAMN02925400.
DR   BioSample; SAMN02925407.
DR   BioSample; SAMN05952593.
DR   BioSample; SAMN05952594.
DR   BioSample; SAMN05952595.
DR   BioSample; SAMN05952596.
DR   BioSample; SAMN05952612.
DR   BioSample; SAMN05952613.
DR   BioSample; SAMN05952614.
DR   BioSample; SAMN05952615.
DR   BioSample; SAMN05952626.
DR   BioSample; SAMN07956242.
DR   BioSample; SAMN07956243.
DR   BioSample; SAMN07956244.
DR   BioSample; SAMN07956245.
DR   BioSample; SAMN07956246.
DR   BioSample; SAMN07956247.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2190
FT                   /organism="Sus scrofa"
FT                   /mol_type="transcribed RNA"
FT                   /db_xref="taxon:9823"
FT                   /submitter_seqid="Susscr4EVm004345t2"
FT   CDS             DQIR01158525.1:63..2252
FT                   /codon_start=1
FT                   /product="ubiquitin carboxyl-terminal hydrolase BAP1"
FT                   /note="original_id:Susscrtridba1a_sRn1l2SRR5027063idbaidbt
FT                   k27Loc44653; located at chr13:34545408-34553423:-, 100 pct
FT                   aligned, 17 exons; protein is 100 pct similar to
FT                   human18nc:NP_004647.1 gene.;
FT                   db_xref_other:GenBank:NP_004647.1;
FT                   db_xref_other:busco:EOG090B02LA;
FT                   db_xref_other:pig18ncrf:XM_001925236.6"
FT                   /inference="similar to AA sequence:GenBank:NP_004647.1"
FT                   /protein_id="HDB14002.1"
FT                   /translation="MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYG
FT                   FIFLFKWIEERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCS
FT                   SVDLGPTLSRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVR
FT                   TMEAFHFVSYVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEP
FT                   YHDIRFNLMAVVPDRRIKYEARLHVLKVNRQTILESLQQLIRVTQPELIQTHKSQESQL
FT                   PEESKPVSSKSPLSVEANRASVASEGTHTDGVEEVAGSCPQALTHSPPSKPKLMVKPPG
FT                   SSLNGVPPNPTPIVQRLPAFLDNHNYAKSPMQEEEDLAAGVGRSRVPIRPPQQYSDDED
FT                   DYEDDEEDDMQNTNSAIRYKRKGPGKPGPLSGSGDGQLSVLQPNTINVLAEKLKESQKD
FT                   LSIPLSIKTSSGAGSPAVAVPTHSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPT
FT                   RPSSPVTSHISKVLFGEDDSLLRVDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALT
FT                   ESGKGSSPSVRLSQSSHGSGSPEEKDMVEAMDGREKPGLVRPGEPLSGEKYSPKELLAL
FT                   LKCVEAEIANYEACLKEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQ
FT                   NISVRRRQGVSIGRLHKQRKPDRRKRSRPYKAKRQ"
XX
SQ   Sequence 2190 BP; 521 A; 620 C; 636 G; 413 T; 0 other;
     atgaataagg gctggctgga gctggagagc gaccctggcc tcttcaccct cctggtggaa        60
     gattttggtg tcaaaggggt gcaggtggag gagatctatg accttcagag caaatgccag       120
     ggccctgtgt atggattcat cttcctgttc aaatggatcg aagaacgccg atcccgtcgc       180
     aaggtctcta ccttggtgga tgatacatct gtgattgatg atgatattgt gaataacatg       240
     ttctttgccc accagctgat ccccaactct tgcgccactc atgccctgct gagtgtgctc       300
     ctgaactgca gcagtgtgga cctggggcct accctgagtc gcatgaagga cttcaccaaa       360
     ggcttcagcc ctgagagcaa aggatatgcg attggcaatg ctccggagct ggccaaggca       420
     cataatagcc atgccaggcc cgagccacgc cacctccctg agaagcagaa tggccttagt       480
     gcagtgcgga ccatggaggc attccacttt gtcagctatg tgcctatcac aggccggctt       540
     tttgagctcg atgggctgaa ggtctacccc attgaccatg ggccctgggg ggaggatgag       600
     gaatggacag acaaggcccg gcgggtcatc atggagcgta tcggccttgc cactgcaggg       660
     gagccctacc atgacatccg cttcaacctg atggcggtgg tgcctgaccg caggatcaag       720
     tacgaggcca ggctgcatgt gctgaaggtg aaccgtcaga caatactgga gtcgctgcag       780
     cagctgatta gggtaaccca gccagagctg attcaaaccc acaagtctca agagtcacag       840
     ttgcctgaag agtccaaacc agtcagcagc aagtccccgc tttcggtgga agcaaacagg       900
     gcctcagtgg cctctgaggg cactcacaca gatggtgtgg aggaagtggc tggttcgtgc       960
     ccacaagccc tgacccacag ccctcccagc aaacccaagc tgatggtgaa gcctccaggg      1020
     agcagcctca atggggttcc ccccaacccc actccgattg tccagcggct gccagccttt      1080
     ctggacaatc acaactatgc caagtccccc atgcaggagg aggaagacct ggcagcaggc      1140
     gtgggccgca gccgagttcc aatccgccca ccccagcagt attcagacga tgaggatgac      1200
     tatgaggatg acgaggagga tgacatgcag aataccaact ccgccatcag gtataagcga      1260
     aagggtccag ggaagccagg gccattgagt ggctctggag atgggcagct ctccgtgctg      1320
     cagcccaaca ccatcaacgt cttagctgag aagctcaaag aatctcagaa agacctctcc      1380
     attcctctgt ccatcaagac aagcagcggg gctgggagtc cggctgtggc agtgcccaca      1440
     cactcgcagc cctcacccac ccccagcaat gagagcacgg acacagcctc tgagattggc      1500
     agtgctttca attcaccact gcgctcgccc atccgctcgg ccaaccccac gcggccctct      1560
     agccccgtca cctcccacat ctccaaggtg ctgtttggag aggacgacag cttgctgcgt      1620
     gttgactgca tacgctacaa tcgcgctgta cgtgacctgg gtcctgttat aagcacaggc      1680
     ctgctgcacc tggctgagga tggcgtgctg agtcccctag cactgacaga gagtgggaag      1740
     ggttcctccc cttctgtcag actgagccaa agcagccatg ggtctggcag cccggaggag      1800
     aaggacatgg tagaagctat ggatggcaga gagaagcctg ggttggtcag gcctggcgag      1860
     cctttgagtg gggagaagta ttcacccaag gagctgctgg cattgctgaa gtgtgtggaa      1920
     gctgagatcg caaactatga ggcctgcctc aaggaagaag tggagaagag gaagaagttc      1980
     aagattgacg accagagaag gactcacaac tacgatgagt tcatctgcac cttcatctcc      2040
     atgctggctc aggaaggcat gctggccaac ctagtggagc agaacatctc agtgcggcgg      2100
     cgccagggtg tcagcattgg tcggctccac aagcagcgga agcccgaccg gcggaaacgg      2160
     tcacgcccct acaaagccaa gcgccagtga                                       2190
//