ID HQ290989; SV 1; linear; genomic DNA; STD; VRT; 5259 BP. XX AC HQ290989; XX DT 12-APR-2011 (Rel. 108, Created) DT 31-JUL-2012 (Rel. 113, Last updated, Version 2) XX DE Dendrobates sp. 'Quibdo' 12S ribosomal RNA gene, partial sequence; DE tRNA-Val, 16S ribosomal RNA, and tRNA-Leu genes, complete sequence; NADH DE dehydrogenase subunit 1 (ND1) gene, partial cds; tRNA-Ile, tRNA-Gln, and DE tRNA-Met genes, complete sequence; NADH dehydrogenase subunit 2 (ND2) gene, DE complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, and tRNA-Cys genes, complete DE sequence; and tRNA-Tyr gene, partial sequence; mitochondrial. XX KW . XX OS Ranitomeya sp. 'Quibdo' OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Neobatrachia; Hyloidea; Dendrobatidae; Dendrobatinae; OC Ranitomeya; unclassified Ranitomeya. OG Mitochondrion XX RN [1] RP 1-5259 RX DOI; 10.1073/pnas.1010952108. RX PUBMED; 21444790. RA Santos J.C., Cannatella D.C.; RT "Phenotypic integration emerges from aposematism and scale in poison RT frogs"; RL Proc. Natl. Acad. Sci. U.S.A. 108(15):6175-6180(2011). XX RN [2] RP 1-5259 RA Santos J.C., Cannatella D.C.; RT ; RL Submitted (22-SEP-2010) to the INSDC. RL Integrative Biology, University of Texas at Austin, 1 University Station RL C0930, Austin, TX 78712, USA XX DR MD5; 87aab9f24e3cf792c887a5fcc9ea9069. DR RFAM; RF00005; tRNA. XX FH Key Location/Qualifiers FH FT source 1..5259 FT /organism="Ranitomeya sp. 'Quibdo'" FT /organelle="mitochondrion" FT /isolate="43A" FT /mol_type="genomic DNA" FT /country="Colombia:Choco, Quibdo, La Troje, 50 MASL" FT /specimen_voucher="TNHCFS4943" FT /db_xref="taxon:991020" FT rRNA <1..929 FT /product="12S ribosomal RNA" FT tRNA 930..1000 FT /product="tRNA-Val" FT rRNA 1001..2609 FT /product="16S ribosomal RNA" FT tRNA 2610..2682 FT /product="tRNA-Leu" FT /note="codons recognized: UUR" FT gene <2683..3643 FT /gene="ND1" FT CDS <2683..3643 FT /codon_start=1 FT /transl_table=2 FT /transl_except=(pos:3643,aa:TERM) FT /gene="ND1" FT /product="NADH dehydrogenase subunit 1" FT /note="start codon not determined; TAA stop codon is FT completed by the addition of 3' A residues to the mRNA" FT /db_xref="GOA:F4ZUD1" FT /db_xref="InterPro:IPR001694" FT /db_xref="InterPro:IPR018086" FT /db_xref="UniProtKB/TrEMBL:F4ZUD1" FT /protein_id="AEB39321.1" FT /translation="VSLLIFTQPLCYMVPVLLAVAFLTLIERKVLGYMQHRKGPNVVGP FT TGLLQPIADGVKLFIKEPIRPTASSQVLFLLAPVLAFSIAMIIWAPLPMPLSLSDMNLG FT ILFILALSSLTVYSILGSGWASNSKYALIGALRAVAQTISYEVTLALILLCTILLSGNF FT TLQNFNITQEPLWLIIPMWPLTLMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGP FT FVLFFLAEYANILMMNTISSFIFFGSSTFPSLPHATSTLILKATLLSILFLWVRASYPR FT FRYDQLMHLVWKNFLPLTLALTIWFVIFPLTMLFIPPCF" FT tRNA 3644..3714 FT /product="tRNA-Ile" FT tRNA complement(3714..3784) FT /product="tRNA-Gln" FT tRNA 3784..3852 FT /product="tRNA-Met" FT gene 3854..4888 FT /gene="ND2" FT CDS 3854..4888 FT /codon_start=1 FT /transl_table=2 FT /gene="ND2" FT /product="NADH dehydrogenase subunit 2" FT /db_xref="GOA:F4ZUD2" FT /db_xref="InterPro:IPR001750" FT /db_xref="InterPro:IPR003917" FT /db_xref="InterPro:IPR010933" FT /db_xref="UniProtKB/TrEMBL:F4ZUD2" FT /protein_id="AEB39322.1" FT /translation="MNPYALSVIISSLALGTITTLSSFHWILAWIGLELNTLAIIPLMT FT KIPHPRSIEAATKYFLTQAAASALILFASTLNAWLTGEWTILNPMNPISTVLLSIAIFT FT KLGVAPFHFWLPEVLQGLSLQTGLILSTWQKLAPMALLLQFPQSLNLNLILTLGLISTL FT IGGWGGINQTQIRKILAFSSIAHLGWIVLILKISPQLSLFNFILYLIMTSTLFLMFIAI FT NTKNILQLSTSWSKAPTLAALSLLSLLSLSGLPPLTGFLPKWLIAQELIKQDLMTFAFF FT ILLITLLSLFFYLRLTYTMSLTLAPNSSFSPASWSFKNKTNLSPMVLASLCLLPISPSL FT LAIC" FT tRNA 4889..4956 FT /product="tRNA-Trp" FT tRNA complement(4957..5025) FT /product="tRNA-Ala" FT tRNA complement(5026..5098) FT /product="tRNA-Asn" FT rep_origin 5099..5128 FT /note="light strand replication origin" FT tRNA complement(5126..5188) FT /product="tRNA-Cys" FT tRNA complement(5189..>5259) FT /product="tRNA-Tyr" XX SQ Sequence 5259 BP; 1523 A; 1391 C; 804 G; 1541 T; 0 other; aaggtttggt cccagccttg aaatcagttc ttgtttaata tacacatgca agtctccgca 60 ccccagtgag aacgccctta tttccctctt agggaacagg agctggtatc aggcccaatt 120 cgtgcccata acacctagtc tcgccacacc cacaagggtc ttcagcagtg attaacattg 180 agtatgagcg ccaacttgac tcagttagaa tataaagagc cggctaatct ggtgccagcc 240 gccgcggtta ccccattgtg gctcaaattg atttccttcg gcgtaaagcg tgattaaaga 300 accccactat ttctggaatc caactaaaac taagctgtga cacgcttgtt accttagaag 360 cccacaaacg aaagttattc caatctcatc agcttgaatt cacgacaatt gaggaacaaa 420 ctaggattag ataccctact atgctcagtc gtaaacttta aattaccccc tcttcgcccg 480 ggaactacga gccaagctta aaacccaaag gacttgacgg taccccatat ccccctagag 540 gagcctgtcc tataatcgat aacccccgtt caacctcacc actcctagca attcagcctg 600 tatacctccg tcgtcagctt accacgtgag cgtaagtgag ctcaatgttt ttccaactaa 660 acgtcaggtc aaggtgcaac atatgtagtg ggaagagatg ggctacactt tctatcatta 720 gatcacacgg aagactacct atgaaaccta gtcagaaggc ggatttagaa gtaaaacgga 780 attagaaagt cctttttaac ccggcactgg ggtgtgtaca caccgcccgt caccctcctc 840 aatgctccta acaagttttt aacactttcc agctatttag aagaggcaag tcgtaacatg 900 gtaagcatac cggaaggtgt gcttggaaac aaaatgtagc ttaactctaa agcccttcgc 960 ttacaccgaa actatctctg tgaaacccag atcattttga gcctaatctc tagccccacc 1020 tcaatgcata attattcctt aactcttcct cccttccaaa acatttcctt ggtttagtaa 1080 aggtgattaa aaaacttctt ggagcaataa attcagtacc gcaagggaaa gatgaaataa 1140 aaatgaaaaa tttcacaagc ccaaaaaagc agagtttaat ccttgtacct tttgcatcat 1200 ggtttaacta gtttaatcaa gcaaaaagac ttttagtttg aacccccgaa tctaggcgag 1260 ctattttaag gcagtttcat gaacgaaccc ttctctgttg caaaagagtg ggaagaccct 1320 aaaatagcgg tgacagacct aacgagccta gtgatagctg gttgctccag aaaaggatct 1380 tagtcctgct taaaccttaa taattttttt aaaaatctgt ttaaagttat tcaaataagg 1440 tacagcctat ttgaaaaagg atacaacctt aattactggg ccaatactct taacttataa 1500 caaagtaggc ctaaaagcag ccatcttaaa caaaagcgtc aaagcttatt tataaactta 1560 gataatccct attctcccca ctacccctta tttccccata gagcaactct atatttatat 1620 agaaaattta atgttaaaac tagtaataag aaccagacca ttctctttaa cgcaagttta 1680 tgtcagctag gacaccccac tgacaattaa cgcctctaat atttaagttg aaacaaaaca 1740 agaaaaatct cctattatta gcgtccatct aacaccagag cgttgcaaga aagattaaaa 1800 gaaaaagaag gaattcggca aatattagtc ccgcctgttt accaaaaaca tcgcctcctg 1860 cataacaaat aggaggtcca gcctgcccag tgacattgtt caacggccgc ggtatcctaa 1920 ccgtgcgaag gtagcgtaat cacttgttct ttaattgagg actagtatga atggccccac 1980 gaggactaca ctgtctcctt tttctaatca atgaaactga tctccccgtg aagaagcggg 2040 gataaatcta taagacgaga agaccctatg gagctttaaa caacaggaat atttgcttcc 2100 ctcctaccac tttctgtaaa attaaactaa ttcaagcatt ttatctccta gttttaggtt 2160 ggggtgacca cggagaaaaa ataaacctcc acgttgaaag aagccttcta tcttctaagc 2220 aaaaagacac aactttatgc atcaacacat tgactcccat tgacccaata atttgatcaa 2280 cgaaccaagt taccctgggg ataacagcgc aatctacttt gagagctcat atcgacaagt 2340 aggtttacga cctcgatgtt ggatcagggt gtccaagtgg tgcagccgct actaatggtt 2400 cgtttgttca acgattaaaa ccctacgtga tctgagttca gaccggagta atccaggtca 2460 gtttctatct ataaagagat ttttctagta cgaaaggacc gaaaaaccat ggccaatgca 2520 cctctaagcc ataagttctc aagtttatgc tctcccctta ataactaaga atctttaacc 2580 cacctctaga aaagaggtgt tttattctag ctaatgtagc aaaacccggt tttgctaaag 2640 acctaaactc tttccataga agttcaaatc ttctcgctag ctgtgagcct tctcattttt 2700 actcaaccac tgtgttacat agtacctgtc ctcttggcag ttgcattttt aacccttatt 2760 gagcggaaag ttcttggata tatacaacac cgcaaaggcc ctaacgtcgt tggccccaca 2820 ggccttctcc aacctatcgc tgacggagtt aaactattta ttaaagagcc tattcgaccc 2880 accgcttcct cccaagttct atttttactt gctcctgtcc tggctttctc catcgccata 2940 attatctgag cccccttacc cataccccta tccctgtcgg acatgaatct aggcatctta 3000 tttattctag ctctatccag cctaactgta tattcaattc taggttccgg ttgagcctca 3060 aactctaaat acgccctcat tggagcttta cgagcagtcg ctcaaactat ctcttatgaa 3120 gttacactag cccttattct tctctgcacc attctactct ccggaaattt cactcttcaa 3180 aactttaata ttacccaaga gcccttatga ttaattattc ctatatggcc cctcacccta 3240 atatgatata tttccacatt agctgaaacc aaccgagccc catttgactt aaccgaagga 3300 gaatctgaac tagtctccgg ctttaacgta gaatatgctg ggggcccatt tgtcctattt 3360 ttcttagcag agtatgccaa catcttaata ataaatacaa tttcatcctt tattttcttt 3420 ggctcttcaa cttttccctc tctcccccat gccacatcta cccttatcct aaaagctact 3480 ctactttcca tcctttttct ttgagttcgc gcctcatacc cacgctttcg ctacgaccaa 3540 cttatacatc ttgtttgaaa gaactttctc cccttaaccc ttgccctcac catttgattc 3600 gttatcttcc cactcactat actatttatt cctccctgct tctggaaatg tgcctgaaag 3660 ttaaggacct ccttgatagg gagaacaata agggctcaaa ccccttcatt tccttagaaa 3720 gatagggatc gaacctataa ctgagagatc aaaaccctct gtaattccat tttaccactt 3780 tctagtaaag tcagctaaac aagcttttgg gcccataccc caaacatgtt ggttaaaccc 3840 cctcctttac taaattaatc catacgctct ctcagtaatt atttctagtc ttgccctagg 3900 aactatcact accttatcaa gtttccactg aattttagcc tgaattggct tagaactcaa 3960 caccctagct attattccct taataactaa gatcccacac ccccgttcca tcgaagccgc 4020 aactaaatac tttcttactc aagccgccgc ctccgcactt atcctattcg ctagcaccct 4080 caatgcctga ctcacaggtg aatgaaccat cttaaatcct ataaatccaa tctcaacagt 4140 tctcctctca atcgccatct ttactaaact aggagtcgct ccttttcact tttgactacc 4200 agaagtactt caaggccttt ctcttcaaac aggcttaatc ttgtcaactt gacaaaaatt 4260 ggccccaatg gctctacttc tgcaatttcc acagtccctc aacttaaacc taattctaac 4320 cctaggcctt atttctaccc tcattggagg atgggggggc atcaatcaaa ctcaaattcg 4380 taagatccta gcattttcct ccatcgccca cctaggatga attgtcctga tcctaaaaat 4440 ctcccctcag ctctccctct tcaattttat cctctacctt attataacat ccacattatt 4500 cttaatattc attgctatca acactaaaaa catcctacaa ctatctactt cttgatctaa 4560 agcccccact cttgctgcac tatctcttct ctctctcctt tccctcagtg gcctccctcc 4620 cctaacaggt tttttaccaa aatgactcat cgcccaagaa ctcattaaac aagacttgat 4680 aactttcgcc ttttttattc ttctaattac tcttctaagc ctattttttt acctacgcct 4740 tacctacact atgtccctca ctttagcccc caattcatcc ttctcccctg cctcttgatc 4800 ttttaaaaat aaaactaacc tctctccaat agttcttgcc tctttatgtc ttctccccat 4860 ttccccctcc cttttagcta tttgttagaa gcttaggatc aactaaacct agggccttca 4920 aagcccttaa tagaagtgaa actcttctag cttctgtaag atttgaagga tattaaccca 4980 catcttctaa atgcaactca gatactttta ttaagataaa atctcctaga aaaacgggcc 5040 tcgatcccgt aaaactttag ttaacagcta aacactctat ccagcgagct ttattctact 5100 tctcccgtta gtgaaaaaac gggagaagcc ccggcagatc tattctgctt ttcaggggtt 5160 gcaatcctgc gtgtaacact ccggagcctg gtaagaagag gattagaacc tctgttttcg 5220 gggctacaac ccgccgccta ttctctcggc catcttacc 5259 //