ID   KM214794; SV 1; linear; genomic DNA; STD; VRT; 652 BP.
XX
AC   KM214794;
XX
DT   28-JAN-2015 (Rel. 123, Created)
DT   28-MAR-2016 (Rel. 128, Last updated, Version 5)
XX
DE   Garra rufa isolate Ex90G10 cytochrome oxidase subunit I (COI) gene, partial
DE   cds; mitochondrial.
XX
KW   .
XX
OS   Garra rufa
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Garra.
OG   Mitochondrion
XX
RN   [1]
RP   1-652
RA   Hamidan N.A., Geiger M.F., Freyhof J.;
RT   "Garra jordanica, a new species from the Dead Sea basin with remarks on the
RT   relationship of G. ghorensis, G. tibanica and G. rufa (Teleostei:
RT   Cyprinidae)";
RL   Ichthyol. Explor. Freshw. 25(3):223-236(2014).
XX
RN   [2]
RP   1-652
RA   Behrens-Chapuis S., Herder F., Esmaeili H.R., Freyhof J., Hamidan N.A.,
RA   Ozulug M., Sanda R., Geiger M.F.;
RT   "Adding nuclear rhodopsin data where mitochondrial COI indicates
RT   discrepancies - can this marker help to explain conflicts in cyprinids?";
RL   DNA Barcodes (Berlin) 3:187-199(2015).
XX
RN   [3]
RP   1-652
RA   Geiger M.F., Freyhof J., Herder F.;
RT   ;
RL   Submitted (12-JUL-2014) to the INSDC.
RL   Ichthyology, ZFMK, Adenauerallee 160, Bonn, NRW 53113, Germany
XX
DR   MD5; 63e2622f8037215980b5f9c4e63e4400.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..652
FT                   /organism="Garra rufa"
FT                   /organelle="mitochondrion"
FT                   /isolate="Ex90G10"
FT                   /mol_type="genomic DNA"
FT                   /PCR_primers="fwd_name: VF2_t1, fwd_seq:
FT                   tgtaaaacgacggccagtcaaccaaccacaaagacattggcac, rev_name:
FT                   FR1d_t1, rev_seq:
FT                   caggaaacagctatgacacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:137080"
FT   gene            <1..>652
FT                   /gene="COI"
FT   CDS             <1..>652
FT                   /codon_start=2
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit I"
FT                   /db_xref="GOA:A0A0B4PJD1"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:A0A0B4PJD1"
FT                   /protein_id="AIQ84489.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGSLLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPAISQYQ
FT                   TPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL"
XX
SQ   Sequence 652 BP; 168 A; 171 C; 125 G; 188 T; 0 other;
     cctctatctt gtattcggtg cttgggctgg tatagtagga actgccctaa gccttcttat        60
     ccgggctgag ctaagccagc ctggatcgct cttaggtgat gaccaaatct acaacgttat       120
     cgttactgct cacgcttttg taataatttt ctttatagtt atgcccattc taatcggggg       180
     gtttgggaat tgacttgtgc cactaataat tggggcccca gacatagcat tcccacgaat       240
     aaataatata agcttctgac tactgccccc atcatttcta ttattactag cctcatctgg       300
     tgtagaagcc ggggccggaa cgggatgaac agtttaccca ccccttgcag gcaaccttgc       360
     ccatgcagga gcgtcagtag acttaacaat tttctcacta catctagcag gggtgtcatc       420
     aattctaggg gccatcaatt ttattaccac aaccattaat ataaaacccc cagccatctc       480
     ccaatatcaa acaccactct tcgtgtggtc tgtacttgta accgccgtac tacttctatt       540
     atcattacca gtgctagctg ccgggatcac aatgcttcta acagatcgaa atcttaacac       600
     cacatttttt gacccggcgg gaggaggaga cccaattctt tatcaacacc ta               652
//