ID   MF673349; SV 1; linear; viral cRNA; STD; VRL; 2291 BP.
XX
AC   MF673349;
XX
DT   22-MAR-2018 (Rel. 136, Created)
DT   22-MAR-2018 (Rel. 136, Last updated, Version 3)
XX
DE   Influenza A virus (A/chicken/Jordan/56/2003(H9N2)) segment 2 polymerase PB1
DE   (PB1) and PB1-F2 protein (PB1-F2) genes, complete cds.
XX
KW   .
XX
OS   Influenza A virus (A/chicken/Jordan/56/2003(H9N2))
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes;
OC   Articulavirales; Orthomyxoviridae; Alphainfluenzavirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-2291
RX   DOI; .1016/j.virol.2018.02.016.
RX   PUBMED; 29524835.
RA   Chrzastek K., Lee D.H., Gharaibeh S., Zsak A., Kapczynski D.R.;
RT   "Characterization of H9N2 avian influenza viruses from the Middle East
RT   demonstrates heterogeneity at amino acid position 226 in the hemagglutinin
RT   and potential for transmission to mammals";
RL   Virology 518:195-201(2018).
XX
RN   [2]
RP   1-2291
RA   Chrzastek K., Lee D.-H., Gharaibeh S., Zsak A., Kapczynski D.;
RT   ;
RL   Submitted (16-AUG-2017) to the INSDC.
RL   U.S. National Poultry research Center, USDA/ARS/SEPRL, 934 College Station
RL   Road, Athens, GA 30605, USA
XX
DR   MD5; 87f5573f1152f82e6f8ef87037226772.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2291
FT                   /organism="Influenza A virus
FT                   (A/chicken/Jordan/56/2003(H9N2))"
FT                   /segment="2"
FT                   /host="chicken"
FT                   /strain="A/chicken/Jordan/56/2003"
FT                   /serotype="H9N2"
FT                   /mol_type="viral cRNA"
FT                   /country="Jordan"
FT                   /collection_date="05-Mar-2003"
FT                   /note="passage details: 1"
FT                   /db_xref="taxon:2027237"
FT   gene            1..2277
FT                   /gene="PB1"
FT   CDS             1..2277
FT                   /codon_start=1
FT                   /gene="PB1"
FT                   /product="polymerase PB1"
FT                   /db_xref="GOA:A0A2P0VFB0"
FT                   /db_xref="InterPro:IPR001407"
FT                   /db_xref="InterPro:IPR007099"
FT                   /db_xref="UniProtKB/TrEMBL:A0A2P0VFB0"
FT                   /protein_id="ASW34411.1"
FT                   /translation="MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR
FT                   THQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE
FT                   NSCLETMEVIQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRLNGLTANESGRL
FT                   IDFLKDVMESMDKEKMEIITHFQRKRRVRDNMTKKMITQRTIGKKKQGLNKRSYLIRAL
FT                   TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK
FT                   LANVVRKMMTNSQDTELSFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNVLSIA
FT                   PIMFSNKMARLGKGYMFESKSMKLRTQIPAEMLANIDLKYFNESTKKKIMKIRPILIDG
FT                   TASLSPGMMMGMFNMLSTVLGVSILNLGQKRYTKTTYWWDGLQSSDDFALIVNAPNHEG
FT                   IQAGVDRFYRTCKLVGINMSKKKSYINRTGTFEFTSFFYRYGFVANFSMELPSFGVSGI
FT                   NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL
FT                   KKLWEQTRSKAGLLVSDGGPNLYNIRNLHIPEVCLKWELMDEDYQGRLCNPLNPFVTHK
FT                   EIESVNNAVVMPAHGPAKSIEYDAVSTTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN
FT                   LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARIDFESGRIKKEEFTEIMKICSTIEEL
FT                   RRQKQ"
FT   gene            95..367
FT                   /gene="PB1-F2"
FT   CDS             95..367
FT                   /codon_start=1
FT                   /gene="PB1-F2"
FT                   /product="PB1-F2 protein"
FT                   /db_xref="InterPro:IPR021045"
FT                   /db_xref="UniProtKB/TrEMBL:A0A2P0VFA6"
FT                   /protein_id="ASW34412.1"
FT                   /translation="MEQEQDTLWTRSIEHINTQRRGSGQQTLRQGHPNSIQSMDHYLKI
FT                   TSQADMHKQTVCWKQWLSLKSPTQVSLKTHALKRWKSFSKHEWIN"
XX
SQ   Sequence 2291 BP; 791 A; 448 C; 536 G; 516 T; 0 other;
     atggatgtca atccgacttt actctttttg aaagtgccag cgcaaaatgc tataagtact        60
     acattcccat atactggaga ccctccttac agccatggaa caggaacagg atacactatg       120
     gacacggtca atagaacaca tcaatactca gagaagggga agtggacaac aaacactgag       180
     acaggggcac cccaactcaa tccaatcgat ggaccattac ctgaagataa cgagccaagc       240
     ggatatgcac aaacagactg tgtgttggaa gcaatggctt tccttgaaga gtcccaccca       300
     ggtatctttg aaaactcatg ccttgaaacg atggaagtca ttcagcaaac acgagtggat       360
     aaactgaccc aaggtcgcca gacctatgac tggacattga atagaaacca gccggctgca       420
     actgctttgg ccaacaccat agaggtcttc aggttgaatg gcctaacagc taatgaatcg       480
     gggagactga tagattttct caaggatgta atggagtcaa tggacaaaga aaagatggaa       540
     ataataacac attttcagag aaagagaaga gtgagagaca acatgaccaa gaaaatgatc       600
     acacaaagaa caataggaaa gaaaaagcag gggctgaaca agaggagcta cttaataaga       660
     gcattgacac taaacacaat gacaaaagat gcagaaagag gcaagttgaa gaggcgggca       720
     attgcaacac cggggatgca aattagagga tttgtgtatt ttgtagaaac actagcgagg       780
     agcatatgcg agaaacttga gcaatctggg ctccccgttg gagggaatga gaagaaagct       840
     aaattggcaa atgtagtgag aaagatgatg actaactcac aagatacaga gctctccttt       900
     acaattactg gagacaatac caaatggaat gagaaccaga atcctcggat gtttctggca       960
     atgataacat acatcacaag aaaccaacct gaatggttta ggaatgtctt gagcattgcc      1020
     cctataatgt tctcaaataa aatggcaaga ctaggaaagg gatacatgtt cgaaagtaag      1080
     agcatgaagc tacggacgca aataccagca gaaatgcttg caaacattga tctgaaatac      1140
     ttcaacgaat caacgaaaaa gaaaattatg aaaataaggc ctatcctaat agatggcaca      1200
     gcctcattaa gtcctggaat gatgatgggc atgtttaaca tgctaagtac agtattaggg      1260
     gtctcaattc tgaatcttgg acaaaagagg tacaccaaaa ccacatattg gtgggatgga      1320
     cttcaatcct ctgatgattt cgctctcata gtgaatgcac cgaatcatga gggtatacaa      1380
     gcgggagtgg ataggttcta taggacctgc aaactggttg ggatcaatat gagtaaaaag      1440
     aagtcttaca taaatcggac aggaacattt gagttcacaa gttttttcta ccgctatgga      1500
     tttgtagcca acttcagtat ggagctgcct agttttggag tgtctgggat taatgaatcg      1560
     gctgacatga gcattggagt aacagtaata aagaacaata tgataaacaa tgaccttgga      1620
     ccagcaacag ctcagatggc tcttcagctg ttcatcaagg attacaggta cacataccga      1680
     tgccacaggg gcgatacaca aattcaaaca aggagatcat tcgagctgaa gaaactgtgg      1740
     gagcagaccc gctcaaaagc agggctgttg gtttcagatg gcgggccaaa cctatacaac      1800
     atccggaatc ttcatattcc agaggtctgc ctgaaatggg aattaatgga tgaagactat      1860
     cagggcaggc tttgtaatcc tctaaaccca tttgtcaccc ataaggaaat tgagtccgta      1920
     aacaatgctg tagtgatgcc agctcatggt ccagccaaaa gcatagaata tgatgctgtt      1980
     tcaactaccc actcatggat ccctaagagg aaccgttcca ttctcaatac cagccaaagg      2040
     gggatccttg aggatgagca gatgtaccaa aagtgctgca atctatttga gaaattcttc      2100
     cctagtagct catacaggag accagttgga atttccagca tggtggaggc catggtatct      2160
     agggcccgaa ttgatgcacg aattgacttc gagtctggaa ggattaagaa agaagagttt      2220
     actgagatca tgaagatctg ttccaccatt gaagagctca gacggcaaaa acagtgaatt      2280
     tggcttgtcc t                                                           2291
//