ID MF673349; SV 1; linear; viral cRNA; STD; VRL; 2291 BP. XX AC MF673349; XX DT 22-MAR-2018 (Rel. 136, Created) DT 22-MAR-2018 (Rel. 136, Last updated, Version 3) XX DE Influenza A virus (A/chicken/Jordan/56/2003(H9N2)) segment 2 polymerase PB1 DE (PB1) and PB1-F2 protein (PB1-F2) genes, complete cds. XX KW . XX OS Influenza A virus (A/chicken/Jordan/56/2003(H9N2)) OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2291 RX DOI; .1016/j.virol.2018.02.016. RX PUBMED; 29524835. RA Chrzastek K., Lee D.H., Gharaibeh S., Zsak A., Kapczynski D.R.; RT "Characterization of H9N2 avian influenza viruses from the Middle East RT demonstrates heterogeneity at amino acid position 226 in the hemagglutinin RT and potential for transmission to mammals"; RL Virology 518:195-201(2018). XX RN [2] RP 1-2291 RA Chrzastek K., Lee D.-H., Gharaibeh S., Zsak A., Kapczynski D.; RT ; RL Submitted (16-AUG-2017) to the INSDC. RL U.S. National Poultry research Center, USDA/ARS/SEPRL, 934 College Station RL Road, Athens, GA 30605, USA XX DR MD5; 87f5573f1152f82e6f8ef87037226772. XX FH Key Location/Qualifiers FH FT source 1..2291 FT /organism="Influenza A virus FT (A/chicken/Jordan/56/2003(H9N2))" FT /segment="2" FT /host="chicken" FT /strain="A/chicken/Jordan/56/2003" FT /serotype="H9N2" FT /mol_type="viral cRNA" FT /country="Jordan" FT /collection_date="05-Mar-2003" FT /note="passage details: 1" FT /db_xref="taxon:2027237" FT gene 1..2277 FT /gene="PB1" FT CDS 1..2277 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /db_xref="GOA:A0A2P0VFB0" FT /db_xref="InterPro:IPR001407" FT /db_xref="InterPro:IPR007099" FT /db_xref="UniProtKB/TrEMBL:A0A2P0VFB0" FT /protein_id="ASW34411.1" FT /translation="MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVIQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRLNGLTANESGRL FT IDFLKDVMESMDKEKMEIITHFQRKRRVRDNMTKKMITQRTIGKKKQGLNKRSYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTELSFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNVLSIA FT PIMFSNKMARLGKGYMFESKSMKLRTQIPAEMLANIDLKYFNESTKKKIMKIRPILIDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKRYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINRTGTFEFTSFFYRYGFVANFSMELPSFGVSGI FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWEQTRSKAGLLVSDGGPNLYNIRNLHIPEVCLKWELMDEDYQGRLCNPLNPFVTHK FT EIESVNNAVVMPAHGPAKSIEYDAVSTTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARIDFESGRIKKEEFTEIMKICSTIEEL FT RRQKQ" FT gene 95..367 FT /gene="PB1-F2" FT CDS 95..367 FT /codon_start=1 FT /gene="PB1-F2" FT /product="PB1-F2 protein" FT /db_xref="InterPro:IPR021045" FT /db_xref="UniProtKB/TrEMBL:A0A2P0VFA6" FT /protein_id="ASW34412.1" FT /translation="MEQEQDTLWTRSIEHINTQRRGSGQQTLRQGHPNSIQSMDHYLKI FT TSQADMHKQTVCWKQWLSLKSPTQVSLKTHALKRWKSFSKHEWIN" XX SQ Sequence 2291 BP; 791 A; 448 C; 536 G; 516 T; 0 other; atggatgtca atccgacttt actctttttg aaagtgccag cgcaaaatgc tataagtact 60 acattcccat atactggaga ccctccttac agccatggaa caggaacagg atacactatg 120 gacacggtca atagaacaca tcaatactca gagaagggga agtggacaac aaacactgag 180 acaggggcac cccaactcaa tccaatcgat ggaccattac ctgaagataa cgagccaagc 240 ggatatgcac aaacagactg tgtgttggaa gcaatggctt tccttgaaga gtcccaccca 300 ggtatctttg aaaactcatg ccttgaaacg atggaagtca ttcagcaaac acgagtggat 360 aaactgaccc aaggtcgcca gacctatgac tggacattga atagaaacca gccggctgca 420 actgctttgg ccaacaccat agaggtcttc aggttgaatg gcctaacagc taatgaatcg 480 gggagactga tagattttct caaggatgta atggagtcaa tggacaaaga aaagatggaa 540 ataataacac attttcagag aaagagaaga gtgagagaca acatgaccaa gaaaatgatc 600 acacaaagaa caataggaaa gaaaaagcag gggctgaaca agaggagcta cttaataaga 660 gcattgacac taaacacaat gacaaaagat gcagaaagag gcaagttgaa gaggcgggca 720 attgcaacac cggggatgca aattagagga tttgtgtatt ttgtagaaac actagcgagg 780 agcatatgcg agaaacttga gcaatctggg ctccccgttg gagggaatga gaagaaagct 840 aaattggcaa atgtagtgag aaagatgatg actaactcac aagatacaga gctctccttt 900 acaattactg gagacaatac caaatggaat gagaaccaga atcctcggat gtttctggca 960 atgataacat acatcacaag aaaccaacct gaatggttta ggaatgtctt gagcattgcc 1020 cctataatgt tctcaaataa aatggcaaga ctaggaaagg gatacatgtt cgaaagtaag 1080 agcatgaagc tacggacgca aataccagca gaaatgcttg caaacattga tctgaaatac 1140 ttcaacgaat caacgaaaaa gaaaattatg aaaataaggc ctatcctaat agatggcaca 1200 gcctcattaa gtcctggaat gatgatgggc atgtttaaca tgctaagtac agtattaggg 1260 gtctcaattc tgaatcttgg acaaaagagg tacaccaaaa ccacatattg gtgggatgga 1320 cttcaatcct ctgatgattt cgctctcata gtgaatgcac cgaatcatga gggtatacaa 1380 gcgggagtgg ataggttcta taggacctgc aaactggttg ggatcaatat gagtaaaaag 1440 aagtcttaca taaatcggac aggaacattt gagttcacaa gttttttcta ccgctatgga 1500 tttgtagcca acttcagtat ggagctgcct agttttggag tgtctgggat taatgaatcg 1560 gctgacatga gcattggagt aacagtaata aagaacaata tgataaacaa tgaccttgga 1620 ccagcaacag ctcagatggc tcttcagctg ttcatcaagg attacaggta cacataccga 1680 tgccacaggg gcgatacaca aattcaaaca aggagatcat tcgagctgaa gaaactgtgg 1740 gagcagaccc gctcaaaagc agggctgttg gtttcagatg gcgggccaaa cctatacaac 1800 atccggaatc ttcatattcc agaggtctgc ctgaaatggg aattaatgga tgaagactat 1860 cagggcaggc tttgtaatcc tctaaaccca tttgtcaccc ataaggaaat tgagtccgta 1920 aacaatgctg tagtgatgcc agctcatggt ccagccaaaa gcatagaata tgatgctgtt 1980 tcaactaccc actcatggat ccctaagagg aaccgttcca ttctcaatac cagccaaagg 2040 gggatccttg aggatgagca gatgtaccaa aagtgctgca atctatttga gaaattcttc 2100 cctagtagct catacaggag accagttgga atttccagca tggtggaggc catggtatct 2160 agggcccgaa ttgatgcacg aattgacttc gagtctggaa ggattaagaa agaagagttt 2220 actgagatca tgaagatctg ttccaccatt gaagagctca gacggcaaaa acagtgaatt 2280 tggcttgtcc t 2291 //